Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002555

Physical Location & Seq

Genomic Coordinates Forward (+)

59841948 .. 59862111

Gene Structure 20164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG441700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGCTGGAGCTAATAAATCCAACATGGCAAGCCATATCAATGAGGGAAGGGAGTGAATCTGATGTTTTCTGGAGTGCACTTGGTGAAAAGGCAGAGTATGCAAGAGGAAAAGAAATAAAAGGATACATAGATGATCCACATTTGTTTATGTTGAGCGGAACTGAAGGTGGATTTCAAGATGTTGAGGGTGTTGAAGAGGTGCCAAAGGATGCGGATGATGAAAAGGAGCCAGTGGATGTAGATCCACTAGATGTAGATGATGATGAAGAGGTTCATTTGGATGGAATTATGCCTGAAAACTGGGAATATACTGATGATGGGCCTGAAGTGCAAAGCAATGGTCCAGAAATGAGTGAAGCTGCTAATGGGCTTGAAGTGCAGAGTGGTGGTCCACAGTCAATTGCAGGCAATGGCCCTAGAGTTGGAGCTCAAGCCCGTGGCCCAACTATTACAACTGCAAGAGGCAGAGATCATCAAACAGCCACTTCAAGACAAAAAGATAAAGGGAAGCATAAAGGGAATGTGGAGAATGAGCAAATGCAGGGGAATGGGGGAGCTGTGAATCAGCAGCAGCAACCCCAAGCTCAAGGGAATGGGGGGACTATGAATCAGCACCAGCAGCAGCCCCAAGCTCAAAATGTTGAAGCTCCTCAGAATCTTCAGCAACAACACCAGGTTTCAATGGAGGATGTTGAGGTTCCAGCTCCTGCAGAGCCACCACAGGTTAATTCTGAGACTATTACTGGACCTGTGAATGTTGATCACTTCAATGTAATGCCATCACAAAATTCCACCAATAATGGTCAGCAGACACAGGTAAATCAGCAAACTGGAGCCTCCTCTAGGCCTCTGTTTTCAGGAAAAAGGTTCAAATCCCCAGCAAAAAGAATCAAATTCCCAAAGAACCCTACACAAGAGTCTACTTCTAGCACTGCTTCTAGAACTGGAAGTAAGAAGGCTAATTGGAAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04666 ko04810 ko05203 map04666 map04810 map05203

Pfam Domains

Protein Families

Gelsolin VHP

Protein Analysis

324

Amino Acids

35.27

Weight (kDa)

4.72

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097701 RchiOBHm_Chr6g0292791
rosa_laevigata	RLG00000015275 RLG00000021547 RLG00000030592
rosa_roxburghii	Rroxscaffold_1G00036680 Rroxscaffold_1G00041910 Rroxscaffold_4G00298950
rosa_samantha	Rh1BG038600 Rh1BG413300 Rh1CG442700 Rh1DG446300 Rh2AG239900 Rh2AG454600 Rh2BG458800 Rh2CG329000 Rh2CG441700 Rh2DG247800 Rh3AG319400 Rh3DG074200 Rh3DG253400 Rh4AG134000 Rh4CG324700 Rh4DG018300 Rh5BG409600 Rh5CG361100 Rh5CG434400 Rh5DG243200 Rh6AG347300 Rh6CG028700 Rh6CG148300 Rh6CG361100 Rh6DG027800 Rh7AG187400 Rh7BG242700
rosa_wichuraiana	Rw0G008450 Rw2G012270 Rw4G030630 Rw5G021380 Rw5G046710 Rw6G001850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	199
AccBSI	CCGCTC	1 cut(s)	156
AccI	GTMKAC	1 cut(s)	920
AciI	CCGC	2 cut(s)	156, 212
AclWI	GGATC	2 cut(s)	128, 236
AcsI	RAATTY	2 cut(s)	787, 893
AcuI	CTGAAG	3 cut(s)	183, 345, 644
AdeI	CACNNNGTG	1 cut(s)	83
AfaI	GTAC	1 cut(s)	971
AfiI	CCNNNNNNNGG	2 cut(s)	422, 843
AgsI	TTSAA	8 cut(s)	176, 194, 374, 489, 644, 681, 769, 871
AjnI	CCWGG	1 cut(s)	672
AluBI	AGCT	8 cut(s)	10, 359, 428, 557, 584, 632, 647, 704
AluI	AGCT	8 cut(s)	10, 359, 428, 557, 584, 632, 647, 704
Alw21I	GWGCWC	2 cut(s)	79, 430
Alw26I	GTCTC	1 cut(s)	728
Alw44I	GTGCAC	1 cut(s)	75
AlwI	GGATC	2 cut(s)	128, 236
AlwNI	CAGNNNCTG	1 cut(s)	707
AoxI	GGCC	4 cut(s)	320, 412, 439, 845
ApaLI	GTGCAC	1 cut(s)	75
ApeKI	GCWGC	5 cut(s)	359, 568, 571, 619, 622
ApoI	RAATTY	2 cut(s)	787, 893
ArsI	GACNNNNNNTTYG	2 cut(s)	325, 357
Asp700I	GAANNNNTTC	1 cut(s)	270
AspS9I	GGNCC	6 cut(s)	320, 341, 389, 413, 440, 746
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	3 cut(s)	341, 389, 746
BaeGI	GKGCMC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	430
Bbv12I	GWGCWC	2 cut(s)	79, 430
BbvI	GCAGC	5 cut(s)	346, 580, 583, 631, 634
BccI	CCATC	3 cut(s)	275, 311, 787
BciT130I	CCWGG	1 cut(s)	674
BciVI	GTATCC	1 cut(s)	116
BclI	TGATCA	1 cut(s)	760
BcoDI	GTCTC	1 cut(s)	728
BfaI	CTAG	5 cut(s)	248, 417, 843, 927, 939
BfmI	CTRYAG	1 cut(s)	708
BfuI	GTATCC	1 cut(s)	116
BisI	GCNGC	5 cut(s)	360, 569, 572, 620, 623
BlsI	GCNGC	5 cut(s)	361, 570, 573, 621, 624
BmcAI	AGTACT	1 cut(s)	971
Bme1390I	CCNGG	1 cut(s)	674
Bme18I	GGWCC	3 cut(s)	341, 389, 746
BmgT120I	GGNCC	6 cut(s)	320, 341, 389, 413, 440, 746
BmiI	GGNNCC	4 cut(s)	201, 228, 699, 835
BmrFI	CCNGG	1 cut(s)	674
BmrI	ACTGGG	1 cut(s)	310
BmsI	GCATC	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	310
BpmI	CTGGAG	3 cut(s)	26, 91, 852
BpuEI	CTTGAG	2 cut(s)	414, 570
BsaBI	GATNNNNATC	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	436
Bsc4I	CCNNNNNNNGG	2 cut(s)	422, 843
Bse1I	ACTGG	5 cut(s)	230, 305, 748, 835, 949
Bse3DI	GCAATG	2 cut(s)	343, 415
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	674
BseDI	CCNNGG	1 cut(s)	436
BseGI	GGATG	5 cut(s)	214, 220, 241, 286, 694
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	2 cut(s)	422, 843
BseMI	GCAATG	2 cut(s)	343, 415
BseMII	CTCAG	2 cut(s)	665, 723
BseNI	ACTGG	5 cut(s)	230, 305, 748, 835, 949
BseRI	GAGGAG	2 cut(s)	639, 829
BseSI	GKGCMC	1 cut(s)	79
BseXI	GCAGC	5 cut(s)	346, 580, 583, 631, 634
BseYI	CCCAGC	1 cut(s)	877
BsgI	GTGCAG	1 cut(s)	398
BshFI	GGCC	4 cut(s)	322, 414, 441, 847
BshNI	GGYRCC	1 cut(s)	199
BsiHKAI	GWGCWC	2 cut(s)	79, 430
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	2 cut(s)	422, 843
BsmAI	GTCTC	1 cut(s)	728
BsmFI	GGGAC	1 cut(s)	613
BsnI	GGCC	4 cut(s)	322, 414, 441, 847
Bsp1286I	GDGCHC	2 cut(s)	79, 430
Bsp143I	GATC	4 cut(s)	133, 241, 469, 760
BspACI	CCGC	2 cut(s)	156, 212
BspANI	GGCC	4 cut(s)	322, 414, 441, 847
BspCNI	CTCAG	2 cut(s)	664, 724
BspLI	GGNNCC	4 cut(s)	201, 228, 699, 835
BspMAI	CTGCAG	1 cut(s)	712
BspPI	GGATC	2 cut(s)	128, 236
BspT107I	GGYRCC	1 cut(s)	199
BsrBI	CCGCTC	1 cut(s)	156
BsrDI	GCAATG	2 cut(s)	343, 415
BsrI	ACTGG	5 cut(s)	230, 305, 748, 835, 949
BssECI	CCNNGG	1 cut(s)	436
BssMI	GATC	4 cut(s)	133, 241, 469, 760
Bst2UI	CCWGG	1 cut(s)	674
Bst4CI	ACNGT	1 cut(s)	396
Bst6I	CTCTTC	2 cut(s)	189, 261
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	30, 406
BstDEI	CTNAG	2 cut(s)	651, 732
BstDSI	CCRYGG	1 cut(s)	436
BstENI	CCTNNNNNAGG	1 cut(s)	841
BstF5I	GGATG	5 cut(s)	214, 220, 241, 286, 694
BstKTI	GATC	4 cut(s)	136, 244, 472, 763
BstMAI	GTCTC	1 cut(s)	728
BstMBI	GATC	4 cut(s)	133, 241, 469, 760
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 328, 376, 619
BstNI	CCWGG	1 cut(s)	674
BstSCI	CCNGG	1 cut(s)	672
BstSFI	CTRYAG	1 cut(s)	708
BstSLI	GKGCMC	1 cut(s)	79
BstV1I	GCAGC	5 cut(s)	346, 580, 583, 631, 634
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuI	GTATCC	1 cut(s)	116
BsuRI	GGCC	4 cut(s)	322, 414, 441, 847
BtgI	CCRYGG	1 cut(s)	436
BtsCI	GGATG	5 cut(s)	214, 220, 241, 286, 694
BtsI	GCAGTG	1 cut(s)	930
BtsIMutI	CAGTG	2 cut(s)	237, 930
Cac8I	GCNNGC	2 cut(s)	30, 406
CaiI	CAGNNNCTG	1 cut(s)	707
Cfr13I	GGNCC	6 cut(s)	320, 341, 389, 413, 440, 746
CsiI	ACCWGGT	1 cut(s)	672
Csp6I	GTAC	1 cut(s)	970
CviAII	CATG	1 cut(s)	24
CviQI	GTAC	1 cut(s)	970
DdeI	CTNAG	2 cut(s)	651, 732
DpnI	GATC	4 cut(s)	135, 243, 471, 762
DpnII	GATC	4 cut(s)	133, 241, 469, 760
DraIII	CACNNNGTG	1 cut(s)	83
Eam1104I	CTCTTC	2 cut(s)	189, 261
EarI	CTCTTC	2 cut(s)	189, 261
Ecl136II	GAGCTC	1 cut(s)	428
Eco147I	AGGCCT	1 cut(s)	847
Eco24I	GRGCYC	1 cut(s)	430
Eco47I	GGWCC	3 cut(s)	341, 389, 746
Eco53kI	GAGCTC	1 cut(s)	428
Eco57I	CTGAAG	3 cut(s)	183, 345, 644
EcoICRI	GAGCTC	1 cut(s)	428
EcoNI	CCTNNNNNAGG	1 cut(s)	841
EcoRII	CCWGG	1 cut(s)	672
EcoT38I	GRGCYC	1 cut(s)	430
FaeI	CATG	1 cut(s)	27
FaiI	YATR	9 cut(s)	25, 35, 99, 128, 149, 290, 309, 513, 605
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	1 cut(s)	23
FbaI	TGATCA	1 cut(s)	760
FblI	GTMKAC	1 cut(s)	920
Fnu4HI	GCNGC	5 cut(s)	360, 569, 572, 620, 623
FokI	GGATG	5 cut(s)	221, 227, 248, 293, 701
FriOI	GRGCYC	1 cut(s)	430
Fsp4HI	GCNGC	5 cut(s)	360, 569, 572, 620, 623
FspBI	CTAG	5 cut(s)	248, 417, 843, 927, 939
GluI	GCNGC	5 cut(s)	360, 569, 572, 620, 623
GsaI	CCCAGC	1 cut(s)	881
GsuI	CTGGAG	3 cut(s)	26, 91, 852
HaeIII	GGCC	4 cut(s)	322, 414, 441, 847
Hin1II	CATG	1 cut(s)	27
HinfI	GANTC	6 cut(s)	56, 562, 607, 655, 888, 917
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	3 cut(s)	77, 392, 921
Hpy188I	TCNGA	3 cut(s)	61, 654, 733
Hpy188III	TCNNGA	6 cut(s)	70, 176, 344, 489, 858, 939
Hpy8I	GTNNAC	3 cut(s)	77, 392, 921
HpyAV	CCTTC	3 cut(s)	41, 158, 949
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4V	TGCA	8 cut(s)	77, 101, 331, 379, 404, 458, 541, 710
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 328, 376, 619
HpyF3I	CTNAG	2 cut(s)	651, 732
Hsp92II	CATG	1 cut(s)	27
Ksp22I	TGATCA	1 cut(s)	760
Kzo9I	GATC	4 cut(s)	133, 241, 469, 760
LmnI	GCTCC	7 cut(s)	7, 226, 425, 554, 652, 709, 833
Lsp1109I	GCAGC	5 cut(s)	346, 580, 583, 631, 634
LweI	GCATC	1 cut(s)	199
MabI	ACCWGGT	1 cut(s)	672
MaeI	CTAG	5 cut(s)	248, 417, 843, 927, 939
MalI	GATC	4 cut(s)	135, 243, 471, 762
MbiI	CCGCTC	1 cut(s)	156
MboI	GATC	4 cut(s)	133, 241, 469, 760
MboII	GAAGA	3 cut(s)	206, 278, 650
MfeI	CAATTG	1 cut(s)	399
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	2 cut(s)	79, 430
MluCI	AATT	6 cut(s)	285, 399, 727, 787, 893, 961
MlyI	GAGTC	1 cut(s)	926
MmeI	TCCRAC	2 cut(s)	44, 403
MroXI	GAANNNNTTC	1 cut(s)	270
MseI	TTAA	1 cut(s)	726
MslI	CAYNNNNRTG	3 cut(s)	38, 279, 768
MspR9I	CCNGG	1 cut(s)	674
MunI	CAATTG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	674
MwoI	GCNNNNNNNGC	4 cut(s)	98, 328, 376, 619
NdeII	GATC	4 cut(s)	133, 241, 469, 760
NlaIII	CATG	1 cut(s)	27
NlaIV	GGNNCC	4 cut(s)	201, 228, 699, 835
PceI	AGGCCT	1 cut(s)	847
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	5 cut(s)	56, 562, 607, 655, 888
PkrI	GCNGC	5 cut(s)	361, 570, 573, 621, 624
PleI	GAGTC	1 cut(s)	925
PpsI	GAGTC	1 cut(s)	925
Psp124BI	GAGCTC	1 cut(s)	430
Psp6I	CCWGG	1 cut(s)	672
PspFI	CCCAGC	1 cut(s)	877
PspGI	CCWGG	1 cut(s)	672
PspN4I	GGNNCC	4 cut(s)	201, 228, 699, 835
PspPI	GGNCC	6 cut(s)	320, 341, 389, 413, 440, 746
PstI	CTGCAG	1 cut(s)	712
PstNI	CAGNNNCTG	1 cut(s)	707
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	1 cut(s)	971
RsaNI	GTAC	1 cut(s)	970
RseI	CAYNNNNRTG	3 cut(s)	38, 279, 768
SacI	GAGCTC	1 cut(s)	430
SaqAI	TTAA	1 cut(s)	726
SatI	GCNGC	5 cut(s)	360, 569, 572, 620, 623
Sau3AI	GATC	4 cut(s)	133, 241, 469, 760
Sau96I	GGNCC	6 cut(s)	320, 341, 389, 413, 440, 746
ScaI	AGTACT	1 cut(s)	971
SchI	GAGTC	1 cut(s)	926
ScrFI	CCNGG	1 cut(s)	674
SduI	GDGCHC	2 cut(s)	79, 430
SexAI	ACCWGGT	1 cut(s)	672
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	708
SinI	GGWCC	3 cut(s)	341, 389, 746
SmiMI	CAYNNNNRTG	3 cut(s)	38, 279, 768
SmlI	CTYRAG	2 cut(s)	429, 585
SmoI	CTYRAG	2 cut(s)	429, 585
Sse9I	AATT	6 cut(s)	285, 399, 727, 787, 893, 961
SseBI	AGGCCT	1 cut(s)	847
SsiI	CCGC	2 cut(s)	156, 212
SspMI	CTAG	5 cut(s)	248, 417, 843, 927, 939
SstI	GAGCTC	1 cut(s)	430
StuI	AGGCCT	1 cut(s)	847
StyD4I	CCNGG	1 cut(s)	672
TaaI	ACNGT	1 cut(s)	396
TasI	AATT	6 cut(s)	285, 399, 727, 787, 893, 961
TatI	WGTACW	1 cut(s)	969
TfiI	GAWTC	5 cut(s)	56, 562, 607, 655, 888
Tru1I	TTAA	1 cut(s)	726
Tru9I	TTAA	1 cut(s)	726
TscAI	CASTG	2 cut(s)	237, 937
TseI	GCWGC	5 cut(s)	359, 568, 571, 619, 622
TspDTI	ATGAA	4 cut(s)	234, 263, 279, 620
TspRI	CASTG	2 cut(s)	237, 937
VneI	GTGCAC	1 cut(s)	75
VpaK11BI	GGWCC	3 cut(s)	341, 389, 746
XagI	CCTNNNNNAGG	1 cut(s)	841
XapI	RAATTY	2 cut(s)	787, 893
XbaI	TCTAGA	1 cut(s)	938
XmiI	GTMKAC	1 cut(s)	920
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	5 cut(s)	248, 417, 843, 927, 939
ZrmI	AGTACT	1 cut(s)	971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.