Rh1BG413300

B3 domain-containing

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
53415282 .. 53572281
157000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG413300.1

Sequence Viewer

Length: 1455 bp
ATGGCTTCTTCCAGCTCCCTTGCTGGAAAGGGAAAACGACATGCCGTGCAGGAGAACTCTCCAGCCTTCTGCTTGAGGATTTTCAGTCGTGAAGATCTCAAAGACGGGAAGAAGGAACTTCCGCCGGCAGCTGTGAGGGAGTATGGACATCATTTGGCAGACCATATATACCTTAAGGTTCCAAATTGTGGAAAACATTGGAAAATAGAGTTGAGAACATCACCTCGTCGTGACCGAATGTGGTTAGAGAAGGGATGGGAAGAGTTTGCCAACTTTTACTTACTAGACCAAGGCGACATGGCAACTTTCAGCTCTGAAGGCGAAAATTCCCTTTTCCAAGTAAGCATCTATAGTTGGGATGATATGGAAATAGAATACCCTATTCGCATTGGAGCAGCTGATGTCAGCACACCAGATAGAAAAGAAATAGGAGCTGAAGCTTTAGCTATAGCCATTTCGGTTTCCCCCAGATCCTCTGCTGATGAACGTGGAAGTGCTAAGGTCAGAAGACGAAGAAGGAGAGTAACAGGATCTGAAGCTGAAGCTAGAGCCATTTCAATTTCCCCAAGATCATCTGCTGATGAACACGAATATGATGTGAGCAGTTTCAGGTCGGATAAGCCATTTCTTGATATCAGAATTCCAGCCAAGACCTTGGCCTTTCGTGTGTGTTGTTCATACAAAAGAAGTAACGGAAGAATACAAGCAATAATTTCAGGTGCTGGTTGGAAAGCATTTAGGCAGGACAATCATCTGGAAGAGGGTGATGTCTCTGTGCTAGAGGTGATAGAGGAACATGTTGAGGGTGTTGAAGAGGTGCCAAAGGATGCGGATGATGAAAAGGAGCTAGTGGATGTAGATCCACTAGATGTAGATGATGATGAAGAGGTTCCTTTGGATGGAATTATGCCTGAAAACTGGGAATATACTGATGATGGGCCTGAAGTGCAAAGCAATGGTCCAGAAATGAGTGAAGCTGCTAATGGGCCTGAAGTGCAGAGTGGTGGTCCACAGTCAACTGCAGGCAATGGCCCTAGAGTTGGAGCTCAAGCCCGTGGCCCAACTATTACAACTGCAAGAGGCAGAGATCATCAAGCAGCCACTTCAAGACAAAAAGATAAAGGGAAGCAGAAAGTTATAGAGGAAGAAGGGAATGTGGAGAATGAGCAAATGCAGGGGAATGGGGGAGCTATGAATCAGCAGCAGCAACCCCAAGCTCAAGGGAATGGGGGGACTGTGAATCAGCACCAGCACCAGCCCCAAGCTCAAAATGTTGAAGCTCCTCAGAATCATCAGCAACAACACCAGGTTTCAATGGAGGATGTTGAGGTTCCAGCTCCTGCAGAGCCACCACAGGTTAATTCTGAGACTATTACTGGACCTGTGAATGTTGATCACTTCAATGTAATTCCATCACAAAATTCCACCAATAATGGTCAGCAGACACAGGTATAG

Protein Analysis

484

Amino Acids

53.43

Weight (kDa)

4.94

Isoelectric Point (pI)

53.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 32 - 117 1.8e-09 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 817
AccB7I CCANNNNNTGG 1 cut(s) 188
AciI CCGC 2 cut(s) 122, 830
AclWI GGATC 3 cut(s) 465, 538, 854
AcsI RAATTY 3 cut(s) 325, 639, 1420
AcuI CTGAAG 6 cut(s) 336, 456, 555, 561, 963, 1011
AfiI CCNNNNNNNGG 3 cut(s) 188, 899, 1040
AflII CTTAAG 1 cut(s) 173
AflIII ACRYGT 1 cut(s) 796
AgsI TTSAA 6 cut(s) 558, 812, 1107, 1277, 1314, 1402
AjnI CCWGG 1 cut(s) 1305
Alw21I GWGCWC 1 cut(s) 1048
Alw26I GTCTC 2 cut(s) 775, 1361
AlwI GGATC 3 cut(s) 465, 538, 854
AlwNI CAGNNNCTG 3 cut(s) 533, 722, 1340
AoxI GGCC 5 cut(s) 657, 938, 986, 1030, 1057
ApeKI GCWGC 6 cut(s) 128, 395, 977, 1097, 1201, 1204
ApoI RAATTY 3 cut(s) 325, 639, 1420
ArsI GACNNNNNNTTYG 2 cut(s) 943, 975
Asp700I GAANNNNTTC 1 cut(s) 888
AspS9I GGNCC 7 cut(s) 938, 959, 986, 1007, 1031, 1058, 1379
AsuHPI GGTGA 3 cut(s) 213, 776, 796
AvaII GGWCC 3 cut(s) 959, 1007, 1379
BanI GGYRCC 1 cut(s) 817
BanII GRGCYC 1 cut(s) 1048
BbsI GAAGAC 1 cut(s) 514
Bbv12I GWGCWC 1 cut(s) 1048
BbvI GCAGC 6 cut(s) 140, 407, 964, 1109, 1213, 1216
BccI CCATC 4 cut(s) 249, 893, 929, 1420
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 1307
BclI TGATCA 1 cut(s) 1393
BcoDI GTCTC 2 cut(s) 775, 1361
BfaI CTAG 6 cut(s) 284, 546, 779, 848, 866, 1035
BfmI CTRYAG 4 cut(s) 349, 447, 1020, 1341
BfrI CTTAAG 1 cut(s) 173
BglII AGATCT 1 cut(s) 94
BisI GCNGC 6 cut(s) 129, 396, 978, 1098, 1202, 1205
BlsI GCNGC 6 cut(s) 130, 397, 979, 1099, 1203, 1206
Bme1390I CCNGG 1 cut(s) 1307
Bme18I GGWCC 3 cut(s) 959, 1007, 1379
BmgT120I GGNCC 7 cut(s) 938, 959, 986, 1007, 1031, 1058, 1379
BmiI GGNNCC 4 cut(s) 180, 819, 891, 1332
BmrFI CCNGG 1 cut(s) 1307
BmrI ACTGGG 1 cut(s) 928
BmsI GCATC 2 cut(s) 354, 817
BmuI ACTGGG 1 cut(s) 928
BpiI GAAGAC 1 cut(s) 514
BpmI CTGGAG 1 cut(s) 45
Bpu10I CCTNAGC 1 cut(s) 498
BpuEI CTTGAG 3 cut(s) 94, 1032, 1203
BsaBI GATNNNNATC 1 cut(s) 858
BsaJI CCNNGG 3 cut(s) 289, 654, 1054
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 899, 1040
Bse118I RCCGGY 1 cut(s) 124
Bse1I ACTGG 2 cut(s) 923, 1381
Bse3DI GCAATG 2 cut(s) 961, 1033
Bse8I GATNNNNATC 1 cut(s) 858
BseBI CCWGG 1 cut(s) 1307
BseDI CCNNGG 3 cut(s) 289, 654, 1054
BseGI GGATG 7 cut(s) 260, 364, 832, 838, 859, 904, 1327
BseJI GATNNNNATC 1 cut(s) 858
BseLI CCNNNNNNNGG 3 cut(s) 188, 899, 1040
BseMI GCAATG 2 cut(s) 961, 1033
BseMII CTCAG 2 cut(s) 1298, 1356
BseNI ACTGG 2 cut(s) 923, 1381
BseRI GAGGAG 1 cut(s) 1272
BseXI GCAGC 6 cut(s) 140, 407, 964, 1109, 1213, 1216
BsgI GTGCAG 2 cut(s) 68, 1016
BshFI GGCC 5 cut(s) 659, 940, 988, 1032, 1059
BshNI GGYRCC 1 cut(s) 817
BsiHKAI GWGCWC 1 cut(s) 1048
BsiSI CCGG 1 cut(s) 125
BslFI GGGAC 1 cut(s) 1246
BslI CCNNNNNNNGG 3 cut(s) 188, 899, 1040
BsmAI GTCTC 2 cut(s) 775, 1361
BsmFI GGGAC 1 cut(s) 1246
BsnI GGCC 5 cut(s) 659, 940, 988, 1032, 1059
Bsp1286I GDGCHC 1 cut(s) 1048
Bsp143I GATC 7 cut(s) 94, 470, 530, 569, 859, 1087, 1393
BspACI CCGC 2 cut(s) 122, 830
BspANI GGCC 5 cut(s) 659, 940, 988, 1032, 1059
BspCNI CTCAG 2 cut(s) 1297, 1357
BspLI GGNNCC 4 cut(s) 180, 819, 891, 1332
BspMAI CTGCAG 2 cut(s) 1024, 1345
BspPI GGATC 3 cut(s) 465, 538, 854
BspT107I GGYRCC 1 cut(s) 817
BspTI CTTAAG 1 cut(s) 173
BsrDI GCAATG 2 cut(s) 961, 1033
BsrFI RCCGGY 1 cut(s) 124
BsrI ACTGG 2 cut(s) 923, 1381
BssAI RCCGGY 1 cut(s) 124
BssECI CCNNGG 3 cut(s) 289, 654, 1054
BssMI GATC 7 cut(s) 94, 470, 530, 569, 859, 1087, 1393
BssT1I CCWWGG 2 cut(s) 289, 654
Bst2UI CCWGG 1 cut(s) 1307
Bst4CI ACNGT 2 cut(s) 1014, 1237
Bst6I CTCTTC 4 cut(s) 255, 753, 807, 879
BstAFI CTTAAG 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 126, 1024
BstDEI CTNAG 3 cut(s) 498, 1284, 1365
BstDSI CCRYGG 1 cut(s) 1054
BstF5I GGATG 7 cut(s) 260, 364, 832, 838, 859, 904, 1327
BstKTI GATC 7 cut(s) 97, 473, 533, 572, 862, 1090, 1396
BstMAI GTCTC 2 cut(s) 775, 1361
BstMBI GATC 7 cut(s) 94, 470, 530, 569, 859, 1087, 1393
BstMWI GCNNNNNNNGC 3 cut(s) 318, 946, 994
BstNI CCWGG 1 cut(s) 1307
BstNSI RCATGY 2 cut(s) 44, 800
BstSCI CCNGG 1 cut(s) 1305
BstSFI CTRYAG 4 cut(s) 349, 447, 1020, 1341
BstV1I GCAGC 6 cut(s) 140, 407, 964, 1109, 1213, 1216
BstV2I GAAGAC 1 cut(s) 514
BstX2I RGATCY 4 cut(s) 94, 470, 530, 859
BstXI CCANNNNNNTGG 1 cut(s) 655
BstYI RGATCY 4 cut(s) 94, 470, 530, 859
BsuRI GGCC 5 cut(s) 659, 940, 988, 1032, 1059
BtgI CCRYGG 1 cut(s) 1054
BtsCI GGATG 7 cut(s) 260, 364, 832, 838, 859, 904, 1327
Cac8I GCNNGC 2 cut(s) 126, 1024
CaiI CAGNNNCTG 3 cut(s) 533, 722, 1340
Cfr10I RCCGGY 1 cut(s) 124
Cfr13I GGNCC 7 cut(s) 938, 959, 986, 1007, 1031, 1058, 1379
CsiI ACCWGGT 1 cut(s) 1305
CviAII CATG 3 cut(s) 41, 298, 797
DdeI CTNAG 3 cut(s) 498, 1284, 1365
DpnI GATC 7 cut(s) 96, 472, 532, 571, 861, 1089, 1395
DpnII GATC 7 cut(s) 94, 470, 530, 569, 859, 1087, 1393
Eam1104I CTCTTC 4 cut(s) 255, 753, 807, 879
EarI CTCTTC 4 cut(s) 255, 753, 807, 879
EciI GGCGGA 1 cut(s) 111
Ecl136II GAGCTC 1 cut(s) 1046
Eco130I CCWWGG 2 cut(s) 289, 654
Eco24I GRGCYC 1 cut(s) 1048
Eco32I GATATC 1 cut(s) 634
Eco47I GGWCC 3 cut(s) 959, 1007, 1379
Eco53kI GAGCTC 1 cut(s) 1046
Eco57I CTGAAG 6 cut(s) 336, 456, 555, 561, 963, 1011
EcoICRI GAGCTC 1 cut(s) 1046
EcoRI GAATTC 1 cut(s) 639
EcoRII CCWGG 1 cut(s) 1305
EcoRV GATATC 1 cut(s) 634
EcoT14I CCWWGG 2 cut(s) 289, 654
EcoT38I GRGCYC 1 cut(s) 1048
ErhI CCWWGG 2 cut(s) 289, 654
FaeI CATG 3 cut(s) 44, 301, 800
FaqI GGGAC 1 cut(s) 1246
FatI CATG 3 cut(s) 40, 297, 796
FbaI TGATCA 1 cut(s) 1393
Fnu4HI GCNGC 6 cut(s) 129, 396, 978, 1098, 1202, 1205
FokI GGATG 7 cut(s) 267, 371, 839, 845, 866, 911, 1334
FriOI GRGCYC 1 cut(s) 1048
Fsp4HI GCNGC 6 cut(s) 129, 396, 978, 1098, 1202, 1205
FspBI CTAG 6 cut(s) 284, 546, 779, 848, 866, 1035
GluI GCNGC 6 cut(s) 129, 396, 978, 1098, 1202, 1205
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 5 cut(s) 659, 940, 988, 1032, 1059
HapII CCGG 1 cut(s) 125
Hin1II CATG 3 cut(s) 44, 301, 800
HincII GTYRAC 1 cut(s) 1017
HindII GTYRAC 1 cut(s) 1017
HindIII AAGCTT 1 cut(s) 438
HinfI GANTC 3 cut(s) 1195, 1240, 1288
HpaII CCGG 1 cut(s) 125
HphI GGTGA 3 cut(s) 213, 776, 796
Hpy166II GTNNAC 2 cut(s) 1010, 1017
Hpy188I TCNGA 7 cut(s) 316, 506, 535, 616, 638, 1287, 1366
Hpy188III TCNNGA 6 cut(s) 89, 230, 629, 755, 962, 1107
Hpy8I GTNNAC 2 cut(s) 1010, 1017
Hpy99I CGWCG 1 cut(s) 231
HpyAV CCTTC 6 cut(s) 76, 106, 244, 311, 510, 1142
HpyCH4III ACNGT 2 cut(s) 1014, 1237
HpyCH4IV ACGT 1 cut(s) 487
HpyCH4V TGCA 7 cut(s) 49, 949, 997, 1022, 1076, 1174, 1343
HpyF10VI GCNNNNNNNGC 3 cut(s) 318, 946, 994
HpyF3I CTNAG 3 cut(s) 498, 1284, 1365
HpySE526I ACGT 1 cut(s) 487
Hsp92II CATG 3 cut(s) 44, 301, 800
KroI GCCGGC 1 cut(s) 124
KroNI GCCGGC 1 cut(s) 126
Ksp22I TGATCA 1 cut(s) 1393
Kzo9I GATC 7 cut(s) 94, 470, 530, 569, 859, 1087, 1393
LmnI GCTCC 8 cut(s) 20, 392, 431, 844, 1043, 1187, 1285, 1342
Lsp1109I GCAGC 6 cut(s) 140, 407, 964, 1109, 1213, 1216
LweI GCATC 2 cut(s) 354, 817
MabI ACCWGGT 1 cut(s) 1305
MaeI CTAG 6 cut(s) 284, 546, 779, 848, 866, 1035
MaeII ACGT 1 cut(s) 487
MaeIII GTNAC 3 cut(s) 230, 523, 689
MalI GATC 7 cut(s) 96, 472, 532, 571, 861, 1089, 1395
MboI GATC 7 cut(s) 94, 470, 530, 569, 859, 1087, 1393
MflI RGATCY 4 cut(s) 94, 470, 530, 859
MhlI GDGCHC 1 cut(s) 1048
MluCI AATT 9 cut(s) 184, 325, 558, 639, 711, 903, 1360, 1407, 1420
MmeI TCCRAC 3 cut(s) 594, 707, 1021
MroNI GCCGGC 1 cut(s) 124
MroXI GAANNNNTTC 1 cut(s) 888
MseI TTAA 2 cut(s) 174, 1359
MslI CAYNNNNRTG 2 cut(s) 591, 1401
MspA1I CMGCKG 2 cut(s) 131, 398
MspCI CTTAAG 1 cut(s) 173
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 1 cut(s) 1307
MvaI CCWGG 1 cut(s) 1307
MwoI GCNNNNNNNGC 3 cut(s) 318, 946, 994
NaeI GCCGGC 1 cut(s) 126
NdeII GATC 7 cut(s) 94, 470, 530, 569, 859, 1087, 1393
NgoMIV GCCGGC 1 cut(s) 124
NlaIII CATG 3 cut(s) 44, 301, 800
NlaIV GGNNCC 4 cut(s) 180, 819, 891, 1332
NmuCI GTSAC 1 cut(s) 230
NspI RCATGY 2 cut(s) 44, 800
PciI ACATGT 1 cut(s) 796
PcsI WCGNNNNNNNCGW 1 cut(s) 232
PdiI GCCGGC 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 888
PfeI GAWTC 3 cut(s) 1195, 1240, 1288
PflMI CCANNNNNTGG 1 cut(s) 188
PkrI GCNGC 6 cut(s) 130, 397, 979, 1099, 1203, 1206
PscI ACATGT 1 cut(s) 796
Psp124BI GAGCTC 1 cut(s) 1048
Psp6I CCWGG 1 cut(s) 1305
PspGI CCWGG 1 cut(s) 1305
PspN4I GGNNCC 4 cut(s) 180, 819, 891, 1332
PspPI GGNCC 7 cut(s) 938, 959, 986, 1007, 1031, 1058, 1379
PstI CTGCAG 2 cut(s) 1024, 1345
PstNI CAGNNNCTG 3 cut(s) 533, 722, 1340
PsuI RGATCY 4 cut(s) 94, 470, 530, 859
PvuII CAGCTG 2 cut(s) 131, 398
RseI CAYNNNNRTG 2 cut(s) 591, 1401
SacI GAGCTC 1 cut(s) 1048
SaqAI TTAA 2 cut(s) 174, 1359
SatI GCNGC 6 cut(s) 129, 396, 978, 1098, 1202, 1205
Sau3AI GATC 7 cut(s) 94, 470, 530, 569, 859, 1087, 1393
Sau96I GGNCC 7 cut(s) 938, 959, 986, 1007, 1031, 1058, 1379
ScrFI CCNGG 1 cut(s) 1307
SduI GDGCHC 1 cut(s) 1048
SexAI ACCWGGT 1 cut(s) 1305
SfaNI GCATC 2 cut(s) 354, 817
SfcI CTRYAG 4 cut(s) 349, 447, 1020, 1341
SinI GGWCC 3 cut(s) 959, 1007, 1379
SmiMI CAYNNNNRTG 2 cut(s) 591, 1401
SmlI CTYRAG 4 cut(s) 73, 173, 1047, 1218
SmoI CTYRAG 4 cut(s) 73, 173, 1047, 1218
Sse9I AATT 9 cut(s) 184, 325, 558, 639, 711, 903, 1360, 1407, 1420
SsiI CCGC 2 cut(s) 122, 830
SspMI CTAG 6 cut(s) 284, 546, 779, 848, 866, 1035
SstI GAGCTC 1 cut(s) 1048
StyD4I CCNGG 1 cut(s) 1305
StyI CCWWGG 2 cut(s) 289, 654
TaaI ACNGT 2 cut(s) 1014, 1237
TaiI ACGT 1 cut(s) 490
TaqII GACCGA 1 cut(s) 249
TasI AATT 9 cut(s) 184, 325, 558, 639, 711, 903, 1360, 1407, 1420
TfiI GAWTC 3 cut(s) 1195, 1240, 1288
Tru1I TTAA 2 cut(s) 174, 1359
Tru9I TTAA 2 cut(s) 174, 1359
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 6 cut(s) 128, 395, 977, 1097, 1201, 1204
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 6 cut(s) 498, 597, 666, 852, 897, 1208
TspGWI ACGGA 1 cut(s) 708
Van91I CCANNNNNTGG 1 cut(s) 188
Vha464I CTTAAG 1 cut(s) 173
VpaK11BI GGWCC 3 cut(s) 959, 1007, 1379
XapI RAATTY 3 cut(s) 325, 639, 1420
XceI RCATGY 2 cut(s) 44, 800
XmnI GAANNNNTTC 1 cut(s) 888
XspI CTAG 6 cut(s) 284, 546, 779, 848, 866, 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.