Rh2DG247800

Vesicle-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002555
Physical Location & Seq
Forward (+)
25467532 .. 25474287
6756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG247800.1

Sequence Viewer

Length: 846 bp
ATGATTGATCATGATGTTTCCCAGCACCAGTACCCTCGCGGCCACGCCTTGGTAAATTTTTTTTTTCTAGATCCACTACTTTTTAGTTCAAATCTAGTTAAAAGTGAAAAAGCTAGAGGAAGTATATGTGAATTTCGAACCGATTTCGGAATTTTCAATGTAATTGTAATATTGGGTTTTGGAAATAGGCAGGTGGCTAGTGCTTTTGCATTCTCTCTTGGACTCGTCTATGGAAACATTAAGAATGCTCAGGGTCTTCAAGTGTTTAGGTTTGTGGAACAACCTGACAGCAATGAGAAAATTCTGGATCAAAAGACCAAAGTCAAGTTCCAAATTATGAGTCTGAAGGTCAAAGCTGAAACAGACTATGCTCCTGAGCTGTTTGATCACTTGATGAGCAAAATGATCAAAGTAGCAGTTGAGCGAATTTTGCGGGTTGTATTTTTAGATGCAGAGCACCCTACTCCTGTGCAAGAGGGTTCTGAAAATGTGGAAGAAGAGGTTCATATGGATTCTGAAGATGAGTATATGCCAGAAGAGGAGAATGGTGAAAATGAGCTGCCTCCAGAAGATGGTGCAAATGTCCTGCCTCCAGTTCATGGTGAAAATGTGTTCCCTCCAGAAGATGCTGCAAATATGCAGCAACAGCCTGAAATGGAAGTTCAAGTTCCAGAAAATGCAGAGGTGCCCCAGGTCATTCATCAGCAATCACAAGTCATTTCTGAGAATTTTAGTGACAATGTGACAATTGATGTGGAACTTGTCACTGGAATGCATTCACAAACTTCAACAAATATTGCATTGCAACCACAGGACAAAAGATTCCAAGGGCATACTGTGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0016020 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Motile_Sperm

Protein Analysis

281

Amino Acids

31.66

Weight (kDa)

4.61

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 181
Acc36I ACCTGC 1 cut(s) 181
AccB1I GGYRCC 1 cut(s) 685
AccB7I CCANNNNNTGG 3 cut(s) 49, 572, 599
AccII CGCG 1 cut(s) 39
AciI CCGC 2 cut(s) 39, 433
AclWI GGATC 2 cut(s) 65, 315
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 6 cut(s) 55, 131, 150, 300, 426, 727
AcuI CTGAAG 2 cut(s) 365, 537
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 3 cut(s) 49, 572, 599
AgsI TTSAA 5 cut(s) 90, 157, 260, 665, 789
AjnI CCWGG 1 cut(s) 690
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AluBI AGCT 4 cut(s) 113, 356, 379, 559
AluI AGCT 4 cut(s) 113, 356, 379, 559
Alw21I GWGCWC 1 cut(s) 459
AlwI GGATC 2 cut(s) 65, 315
AoxI GGCC 2 cut(s) 40, 840
ApeKI GCWGC 3 cut(s) 559, 629, 640
ApoI RAATTY 6 cut(s) 55, 131, 150, 300, 426, 727
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
Asp700I GAANNNNTTC 2 cut(s) 501, 775
AsuHPI GGTGA 2 cut(s) 560, 614
AsuII TTCGAA 1 cut(s) 136
BaeGI GKGCMC 1 cut(s) 690
BanI GGYRCC 1 cut(s) 685
BbsI GAAGAC 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 459
BbvI GCAGC 3 cut(s) 546, 616, 652
BccI CCATC 1 cut(s) 566
BciT130I CCWGG 1 cut(s) 692
BclI TGATCA 3 cut(s) 7, 385, 405
BfaI CTAG 5 cut(s) 68, 95, 114, 198, 844
BfuAI ACCTGC 1 cut(s) 181
BisI GCNGC 4 cut(s) 40, 560, 630, 641
BlsI GCNGC 4 cut(s) 41, 561, 631, 642
Bme1390I CCNGG 1 cut(s) 692
BmiI GGNNCC 1 cut(s) 687
BmrFI CCNGG 1 cut(s) 692
BmsI GCATC 2 cut(s) 439, 616
BoxI GACNNNNGTC 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 248
BpmI CTGGAG 3 cut(s) 549, 576, 603
Bpu10I CCTNAGC 2 cut(s) 249, 375
Bpu14I TTCGAA 1 cut(s) 136
BsaJI CCNNGG 3 cut(s) 48, 690, 826
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 572, 599
Bse1I ACTGG 3 cut(s) 28, 593, 772
Bse3DI GCAATG 2 cut(s) 298, 800
BseBI CCWGG 1 cut(s) 692
BseDI CCNNGG 3 cut(s) 48, 690, 826
BseLI CCNNNNNNNGG 3 cut(s) 49, 572, 599
BseMI GCAATG 2 cut(s) 298, 800
BseMII CTCAG 3 cut(s) 263, 366, 714
BseNI ACTGG 3 cut(s) 28, 593, 772
BseRI GAGGAG 1 cut(s) 554
BseSI GKGCMC 1 cut(s) 690
BseXI GCAGC 3 cut(s) 546, 616, 652
BseYI CCCAGC 1 cut(s) 21
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 2 cut(s) 42, 842
BshNI GGYRCC 1 cut(s) 685
BsiHKAI GWGCWC 1 cut(s) 459
BslI CCNNNNNNNGG 3 cut(s) 49, 572, 599
BsmI GAATGC 4 cut(s) 209, 250, 775, 777
BsnI GGCC 2 cut(s) 42, 842
Bsp119I TTCGAA 1 cut(s) 136
Bsp1286I GDGCHC 2 cut(s) 459, 690
Bsp143I GATC 5 cut(s) 7, 70, 307, 385, 405
BspACI CCGC 2 cut(s) 39, 433
BspANI GGCC 2 cut(s) 42, 842
BspCNI CTCAG 3 cut(s) 262, 367, 715
BspFNI CGCG 1 cut(s) 39
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 687
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 2 cut(s) 65, 315
BspT104I TTCGAA 1 cut(s) 136
BspT107I GGYRCC 1 cut(s) 685
BsrDI GCAATG 2 cut(s) 298, 800
BsrI ACTGG 3 cut(s) 28, 593, 772
BssECI CCNNGG 3 cut(s) 48, 690, 826
BssMI GATC 5 cut(s) 7, 70, 307, 385, 405
BssT1I CCWWGG 2 cut(s) 48, 826
Bst2UI CCWGG 1 cut(s) 692
Bst4CI ACNGT 1 cut(s) 838
Bst6I CTCTTC 2 cut(s) 492, 531
BstBI TTCGAA 1 cut(s) 136
BstDEI CTNAG 3 cut(s) 249, 375, 723
BstFNI CGCG 1 cut(s) 39
BstKTI GATC 5 cut(s) 10, 73, 310, 388, 408
BstMBI GATC 5 cut(s) 7, 70, 307, 385, 405
BstMWI GCNNNNNNNGC 2 cut(s) 430, 646
BstNI CCWGG 1 cut(s) 692
BstPAI GACNNNNGTC 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 690
BstSLI GKGCMC 1 cut(s) 690
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 3 cut(s) 546, 616, 652
BstV2I GAAGAC 1 cut(s) 248
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 2 cut(s) 42, 842
BtsIMutI CAGTG 1 cut(s) 765
BveI ACCTGC 1 cut(s) 181
CciI TCATGA 1 cut(s) 10
Csp6I GTAC 1 cut(s) 31
CspCI CAANNNNNGTGG 2 cut(s) 735, 770
CviAII CATG 2 cut(s) 11, 599
CviJI RGCY 8 cut(s) 42, 113, 197, 356, 379, 559, 649, 842
CviKI_1 RGCY 8 cut(s) 42, 113, 197, 356, 379, 559, 649, 842
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 3 cut(s) 249, 375, 723
DpnI GATC 5 cut(s) 9, 72, 309, 387, 407
DpnII GATC 5 cut(s) 7, 70, 307, 385, 405
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 492, 531
EarI CTCTTC 2 cut(s) 492, 531
Eco130I CCWWGG 2 cut(s) 48, 826
Eco57I CTGAAG 2 cut(s) 365, 537
EcoRII CCWGG 1 cut(s) 690
EcoT14I CCWWGG 2 cut(s) 48, 826
EcoT22I ATGCAT 1 cut(s) 777
ErhI CCWWGG 2 cut(s) 48, 826
FaeI CATG 2 cut(s) 14, 602
FatI CATG 2 cut(s) 10, 598
FauI CCCGC 1 cut(s) 426
FauNDI CATATG 1 cut(s) 507
FbaI TGATCA 3 cut(s) 7, 385, 405
Fnu4HI GCNGC 4 cut(s) 40, 560, 630, 641
Fsp4HI GCNGC 4 cut(s) 40, 560, 630, 641
FspBI CTAG 5 cut(s) 68, 95, 114, 198, 844
GluI GCNGC 4 cut(s) 40, 560, 630, 641
GsaI CCCAGC 1 cut(s) 25
GsuI CTGGAG 3 cut(s) 549, 576, 603
HaeIII GGCC 2 cut(s) 42, 842
Hin1II CATG 2 cut(s) 14, 602
HinfI GANTC 4 cut(s) 222, 340, 512, 822
HphI GGTGA 2 cut(s) 560, 614
Hpy188I TCNGA 5 cut(s) 149, 345, 484, 517, 724
Hpy188III TCNNGA 7 cut(s) 11, 68, 305, 374, 566, 620, 671
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 838
HpyF10VI GCNNNNNNNGC 2 cut(s) 430, 646
HpyF3I CTNAG 3 cut(s) 249, 375, 723
Hsp92II CATG 2 cut(s) 14, 602
Ksp22I TGATCA 3 cut(s) 7, 385, 405
Kzo9I GATC 5 cut(s) 7, 70, 307, 385, 405
LmnI GCTCC 1 cut(s) 376
Lsp1109I GCAGC 3 cut(s) 546, 616, 652
LweI GCATC 2 cut(s) 439, 616
MaeI CTAG 5 cut(s) 68, 95, 114, 198, 844
MaeIII GTNAC 3 cut(s) 734, 742, 763
MalI GATC 5 cut(s) 9, 72, 309, 387, 407
MboI GATC 5 cut(s) 7, 70, 307, 385, 405
MboII GAAGA 7 cut(s) 248, 506, 509, 530, 548, 581, 635
MfeI CAATTG 1 cut(s) 747
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 2 cut(s) 459, 690
MluCI AATT 9 cut(s) 55, 131, 150, 162, 300, 333, 426, 727, 747
MlyI GAGTC 2 cut(s) 216, 349
MnlI CCTC 9 cut(s) 45, 110, 469, 493, 532, 573, 600, 627, 676
Mph1103I ATGCAT 1 cut(s) 777
MroXI GAANNNNTTC 2 cut(s) 501, 775
MseI TTAA 2 cut(s) 99, 240
MslI CAYNNNNRTG 1 cut(s) 770
MspR9I CCNGG 1 cut(s) 692
MunI CAATTG 1 cut(s) 747
Mva1269I GAATGC 4 cut(s) 209, 250, 775, 777
MvaI CCWGG 1 cut(s) 692
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 430, 646
NdeI CATATG 1 cut(s) 507
NdeII GATC 5 cut(s) 7, 70, 307, 385, 405
NlaIII CATG 2 cut(s) 14, 602
NlaIV GGNNCC 1 cut(s) 687
NmuCI GTSAC 3 cut(s) 734, 742, 763
NsiI ATGCAT 1 cut(s) 777
NspV TTCGAA 1 cut(s) 136
PagI TCATGA 1 cut(s) 10
PaqCI CACCTGC 1 cut(s) 181
PctI GAATGC 4 cut(s) 209, 250, 775, 777
PdmI GAANNNNTTC 2 cut(s) 501, 775
PfeI GAWTC 2 cut(s) 512, 822
PflMI CCANNNNNTGG 3 cut(s) 49, 572, 599
PkrI GCNGC 4 cut(s) 41, 561, 631, 642
PleI GAGTC 2 cut(s) 216, 348
PpsI GAGTC 2 cut(s) 216, 348
PshAI GACNNNNGTC 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 690
PspFI CCCAGC 1 cut(s) 21
PspGI CCWGG 1 cut(s) 690
PspN4I GGNNCC 1 cut(s) 687
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 770
SaqAI TTAA 2 cut(s) 99, 240
SatI GCNGC 4 cut(s) 40, 560, 630, 641
Sau3AI GATC 5 cut(s) 7, 70, 307, 385, 405
SchI GAGTC 2 cut(s) 216, 349
ScrFI CCNGG 1 cut(s) 692
SduI GDGCHC 2 cut(s) 459, 690
SfaNI GCATC 2 cut(s) 439, 616
SfuI TTCGAA 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 770
Sse9I AATT 9 cut(s) 55, 131, 150, 162, 300, 333, 426, 727, 747
SsiI CCGC 2 cut(s) 39, 433
SspI AATATT 2 cut(s) 171, 796
SspMI CTAG 5 cut(s) 68, 95, 114, 198, 844
StyD4I CCNGG 1 cut(s) 690
StyI CCWWGG 2 cut(s) 48, 826
TaaI ACNGT 1 cut(s) 838
TaqI TCGA 1 cut(s) 136
TasI AATT 9 cut(s) 55, 131, 150, 162, 300, 333, 426, 727, 747
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 2 cut(s) 512, 822
Tru1I TTAA 2 cut(s) 99, 240
Tru9I TTAA 2 cut(s) 99, 240
TscAI CASTG 1 cut(s) 772
TseFI GTSAC 3 cut(s) 734, 742, 763
TseI GCWGC 3 cut(s) 559, 629, 640
Tsp45I GTSAC 3 cut(s) 734, 742, 763
TspDTI ATGAA 3 cut(s) 494, 587, 689
TspRI CASTG 1 cut(s) 772
Van91I CCANNNNNTGG 3 cut(s) 49, 572, 599
XapI RAATTY 6 cut(s) 55, 131, 150, 300, 426, 727
XbaI TCTAGA 1 cut(s) 67
XmnI GAANNNNTTC 2 cut(s) 501, 775
XspI CTAG 5 cut(s) 68, 95, 114, 198, 844
Zsp2I ATGCAT 1 cut(s) 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.