Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002555

Physical Location & Seq

Genomic Coordinates Forward (+)

19357869 .. 19362552

Gene Structure 4684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG148300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGCAGCTTTTCCAAGTCATCATGTATGGCTTTACATGGCTGTATAATTCTGTCTACTTATGGGTGCAAGAGATATTCAATTTCACACAGGATGATTTAAATACTGAAGATGTGTTAGTCCTCGATTGCCACATTGAGATATACGTCTGGATTGGAAGCCATTCAAATATTAAGTCAAAGCAACAAGCCCTTACTCTTGGCCTGAAATACTATAAGGATAACAATCGTCATGAGTTCAAAAATTTTACTTCACTCACTGAGCTTGGCCTATCTGACAACAACATATCAACACTTCCTCCAAAATTGGTCAACCTCTGCATATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04666 ko04810 ko05203 map04666 map04810 map05203

Pfam Domains

Protein Families

Gelsolin VHP

Protein Analysis

108

Amino Acids

12.76

Weight (kDa)

5.12

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gelsolin	PF00626	27 - 66	2.6e-09	Gelsolin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097701 RchiOBHm_Chr6g0292791
rosa_laevigata	RLG00000015275 RLG00000021547 RLG00000030592
rosa_roxburghii	Rroxscaffold_1G00036680 Rroxscaffold_1G00041910 Rroxscaffold_4G00298950
rosa_samantha	Rh1BG038600 Rh1BG413300 Rh1CG442700 Rh1DG446300 Rh2AG239900 Rh2AG454600 Rh2BG458800 Rh2CG329000 Rh2CG441700 Rh2DG247800 Rh3AG319400 Rh3DG074200 Rh3DG253400 Rh4AG134000 Rh4CG324700 Rh4DG018300 Rh5BG409600 Rh5CG361100 Rh5CG434400 Rh5DG243200 Rh6AG347300 Rh6CG028700 Rh6CG148300 Rh6CG361100 Rh6DG027800 Rh7AG187400 Rh7BG242700
rosa_wichuraiana	Rw0G008450 Rw2G012270 Rw4G030630 Rw5G021380 Rw5G046710 Rw6G001850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	126
AgsI	TTSAA	3 cut(s)	79, 165, 238
AluBI	AGCT	2 cut(s)	7, 262
AluI	AGCT	2 cut(s)	7, 262
AoxI	GGCC	2 cut(s)	199, 265
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	241
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
Asp700I	GAANNNNTTC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	16
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BsaBI	GATNNNNATC	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	280, 310
Bse8I	GATNNNNATC	1 cut(s)	222
BseGI	GGATG	1 cut(s)	97
BseJI	GATNNNNATC	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	2 cut(s)	201, 267
BsnI	GGCC	2 cut(s)	201, 267
BspANI	GGCC	2 cut(s)	201, 267
BspCNI	CTCAG	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	201, 267
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	255
CciI	TCATGA	1 cut(s)	229
CviAII	CATG	3 cut(s)	22, 36, 230
CviJI	RGCY	8 cut(s)	7, 30, 40, 159, 188, 201, 262, 267
CviKI_1	RGCY	8 cut(s)	7, 30, 40, 159, 188, 201, 262, 267
DdeI	CTNAG	1 cut(s)	258
DraI	TTTAAA	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	126
FaeI	CATG	3 cut(s)	25, 39, 233
FatI	CATG	3 cut(s)	21, 35, 229
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	201, 267
Hin1II	CATG	3 cut(s)	25, 39, 233
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
Hpy166II	GTNNAC	2 cut(s)	55, 310
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	2 cut(s)	148, 230
Hpy8I	GTNNAC	2 cut(s)	55, 310
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	3 cut(s)	4, 67, 318
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	3 cut(s)	25, 39, 233
LpnPI	CCDG	3 cut(s)	74, 133, 215
Lsp1109I	GCAGC	1 cut(s)	16
MaeII	ACGT	1 cut(s)	144
MboII	GAAGA	1 cut(s)	119
MluCI	AATT	4 cut(s)	46, 79, 241, 302
MnlI	CCTC	3 cut(s)	131, 306, 323
MroXI	GAANNNNTTC	1 cut(s)	160
MseI	TTAA	3 cut(s)	98, 171, 325
NlaIII	CATG	3 cut(s)	25, 39, 233
PagI	TCATGA	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	6
SaqAI	TTAA	3 cut(s)	98, 171, 325
SatI	GCNGC	1 cut(s)	5
SetI	ASST	4 cut(s)	9, 147, 264, 315
SmiI	ATTTAAAT	1 cut(s)	99
Sse9I	AATT	4 cut(s)	46, 79, 241, 302
SspI	AATATT	1 cut(s)	169
SwaI	ATTTAAAT	1 cut(s)	99
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	1 cut(s)	123
TasI	AATT	4 cut(s)	46, 79, 241, 302
Tru1I	TTAA	3 cut(s)	98, 171, 325
Tru9I	TTAA	3 cut(s)	98, 171, 325
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	1 cut(s)	4
TspRI	CASTG	1 cut(s)	262
XapI	RAATTY	1 cut(s)	241
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.