Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002555

Physical Location & Seq

Genomic Coordinates Forward (+)

66868083 .. 66895199

Gene Structure 27117 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG454600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCTGGAGCTAATAAATCCAACATGGCAAGCCATATCAATGAGGGAAGGGAGTGAATCTGATGTTTTCTGGAGTGCACTTGGTGAAAAGGCAGAGTATGCAAGAGGAAAAGAAATAAAAGGATACATAGATGATCCACATTTGTTTATGTTGAGCGGAACTGAAGGTAACAAAAATTTAGTCTTCAAAATTTTTCTCTCCGAAGATAATGCAGCTTTTCCAAGTCATCATGTGCAAGAGATATTCAATTTCACACAGGATGATTTAAATATTGAAGATGTGTTAGTCCTCGACTGCCACATTGAGATATATGTCTGGATTGGAAGCCACTCAAATATTAAGTCAAAGCAACAAGCCCTTACTCTTGGCCTGGAGTTCAAAAATTTTACTTCACTCACTGAGCTTGGCCTATCTGACAACAACATATCAACATTTCCTCCAAAATTGGGGAATGTGGAGAATGAGCAAATGCAGGGGAATGGGGGAGCTGTGAATCAGCAGCAGCAACCCCAAGCTCAAGGGAATGGGGGGACTATGAATCAGCACCAGCAGCAGCCCCAAGCTCAAAATGTTGAAGCTCCTCAGAATCTTCAGCAACAACACCAGGTTTCAATGGAGGATGTTGAGGTTCCAGCTCCTGCAGAGCCACCACAGGTTAATTCTGAGACTATTACTGGACCTGTGAATGTTGATCACTTCAATGTAATGCCATCACAAAATTCCACCAATAATGGTCAGCAGACACAGGTAAATCAGCAAACTGGAGCCTCCTCTAGGCCTCTGTTTTCAGGAAAAAGGTTCAAATCCCCAGCAAAAAGAATCAAATTCCCAAAGAACCCTACACAAGAGTCTACTTCTAGCACTGCTTCTAGAACTGGAACTTCTGGATCTGTAGTGTTTTGGAGACGCCAGAAGTCGGATTACGAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04666 ko04810 ko05203 map04666 map04810 map05203

Pfam Domains

Protein Families

Gelsolin VHP

Protein Analysis

310

Amino Acids

34.43

Weight (kDa)

5.2

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gelsolin	PF00626	81 - 127	8.3e-08	Gelsolin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097701 RchiOBHm_Chr6g0292791
rosa_laevigata	RLG00000015275 RLG00000021547 RLG00000030592
rosa_roxburghii	Rroxscaffold_1G00036680 Rroxscaffold_1G00041910 Rroxscaffold_4G00298950
rosa_samantha	Rh1BG038600 Rh1BG413300 Rh1CG442700 Rh1DG446300 Rh2AG239900 Rh2AG454600 Rh2BG458800 Rh2CG329000 Rh2CG441700 Rh2DG247800 Rh3AG319400 Rh3DG074200 Rh3DG253400 Rh4AG134000 Rh4CG324700 Rh4DG018300 Rh5BG409600 Rh5CG361100 Rh5CG434400 Rh5DG243200 Rh6AG347300 Rh6CG028700 Rh6CG148300 Rh6CG361100 Rh6DG027800 Rh7AG187400 Rh7BG242700
rosa_wichuraiana	Rw0G008450 Rw2G012270 Rw4G030630 Rw5G021380 Rw5G046710 Rw6G001850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	156
AccI	GTMKAC	1 cut(s)	851
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	2 cut(s)	128, 895
AcsI	RAATTY	5 cut(s)	175, 189, 382, 718, 824
AcuI	CTGAAG	2 cut(s)	183, 575
AcyI	GRCGYC	1 cut(s)	907
AdeI	CACNNNGTG	1 cut(s)	83
AfiI	CCNNNNNNNGG	3 cut(s)	446, 774, 916
AgsI	TTSAA	8 cut(s)	187, 247, 275, 379, 575, 612, 700, 802
AjnI	CCWGG	2 cut(s)	369, 603
AluBI	AGCT	8 cut(s)	10, 215, 403, 488, 515, 563, 578, 635
AluI	AGCT	8 cut(s)	10, 215, 403, 488, 515, 563, 578, 635
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	2 cut(s)	659, 898
Alw44I	GTGCAC	1 cut(s)	75
AlwI	GGATC	2 cut(s)	128, 895
AlwNI	CAGNNNCTG	1 cut(s)	638
AoxI	GGCC	3 cut(s)	367, 406, 776
ApaLI	GTGCAC	1 cut(s)	75
ApeKI	GCWGC	5 cut(s)	212, 499, 502, 550, 553
ApoI	RAATTY	5 cut(s)	175, 189, 382, 718, 824
ArsI	GACNNNNNNTTYG	4 cut(s)	165, 197, 326, 358
AspS9I	GGNCC	1 cut(s)	677
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	677
BaeGI	GKGCMC	1 cut(s)	79
BarI	GAAGNNNNNNTAC	1 cut(s)	905
BbsI	GAAGAC	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	5 cut(s)	224, 511, 514, 562, 565
BccI	CCATC	1 cut(s)	718
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	2 cut(s)	371, 605
BciVI	GTATCC	1 cut(s)	116
BclI	TGATCA	1 cut(s)	691
BcoDI	GTCTC	2 cut(s)	659, 898
BfaI	CTAG	3 cut(s)	774, 858, 870
BfmI	CTRYAG	2 cut(s)	639, 891
BfuI	GTATCC	1 cut(s)	116
BisI	GCNGC	5 cut(s)	213, 500, 503, 551, 554
BlsI	GCNGC	5 cut(s)	214, 501, 504, 552, 555
Bme1390I	CCNGG	2 cut(s)	371, 605
Bme18I	GGWCC	1 cut(s)	677
BmgT120I	GGNCC	1 cut(s)	677
BmiI	GGNNCC	2 cut(s)	630, 766
BmrFI	CCNGG	2 cut(s)	371, 605
BpiI	GAAGAC	1 cut(s)	175
BpmI	CTGGAG	4 cut(s)	26, 91, 392, 783
BpuEI	CTTGAG	1 cut(s)	501
BsaHI	GRCGYC	1 cut(s)	907
BsaXI	ACNNNNNCTCC	2 cut(s)	421, 451
Bsc4I	CCNNNNNNNGG	3 cut(s)	446, 774, 916
Bse1I	ACTGG	3 cut(s)	679, 766, 880
BseBI	CCWGG	2 cut(s)	371, 605
BseGI	GGATG	2 cut(s)	265, 625
BseLI	CCNNNNNNNGG	3 cut(s)	446, 774, 916
BseMII	CTCAG	3 cut(s)	390, 596, 654
BseNI	ACTGG	3 cut(s)	679, 766, 880
BseRI	GAGGAG	2 cut(s)	570, 760
BseSI	GKGCMC	1 cut(s)	79
BseXI	GCAGC	5 cut(s)	224, 511, 514, 562, 565
BseYI	CCCAGC	1 cut(s)	808
BshFI	GGCC	3 cut(s)	369, 408, 778
BsiHKAI	GWGCWC	1 cut(s)	79
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	3 cut(s)	446, 774, 916
BsmAI	GTCTC	2 cut(s)	659, 898
BsmBI	CGTCTC	1 cut(s)	898
BsmFI	GGGAC	1 cut(s)	544
BsnI	GGCC	3 cut(s)	369, 408, 778
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	3 cut(s)	133, 691, 887
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	3 cut(s)	369, 408, 778
BspCNI	CTCAG	3 cut(s)	391, 595, 655
BspHI	TCATGA	1 cut(s)	929
BspLI	GGNNCC	2 cut(s)	630, 766
BspMAI	CTGCAG	1 cut(s)	643
BspPI	GGATC	2 cut(s)	128, 895
BsrBI	CCGCTC	1 cut(s)	156
BsrI	ACTGG	3 cut(s)	679, 766, 880
BssMI	GATC	3 cut(s)	133, 691, 887
BssNI	GRCGYC	1 cut(s)	907
Bst2UI	CCWGG	2 cut(s)	371, 605
BstACI	GRCGYC	1 cut(s)	907
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	3 cut(s)	399, 582, 663
BstENI	CCTNNNNNAGG	1 cut(s)	772
BstF5I	GGATG	2 cut(s)	265, 625
BstKTI	GATC	3 cut(s)	136, 694, 890
BstMAI	GTCTC	2 cut(s)	659, 898
BstMBI	GATC	3 cut(s)	133, 691, 887
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 550
BstNI	CCWGG	2 cut(s)	371, 605
BstSCI	CCNGG	2 cut(s)	369, 603
BstSFI	CTRYAG	2 cut(s)	639, 891
BstSLI	GKGCMC	1 cut(s)	79
BstV1I	GCAGC	5 cut(s)	224, 511, 514, 562, 565
BstV2I	GAAGAC	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	887
BstYI	RGATCY	1 cut(s)	887
BsuI	GTATCC	1 cut(s)	116
BsuRI	GGCC	3 cut(s)	369, 408, 778
BtsCI	GGATG	2 cut(s)	265, 625
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	2 cut(s)	396, 861
Cac8I	GCNNGC	1 cut(s)	30
CaiI	CAGNNNCTG	1 cut(s)	638
CciI	TCATGA	1 cut(s)	929
Cfr13I	GGNCC	1 cut(s)	677
CseI	GACGC	1 cut(s)	915
CsiI	ACCWGGT	1 cut(s)	603
CviAII	CATG	3 cut(s)	24, 230, 930
DdeI	CTNAG	3 cut(s)	399, 582, 663
DpnI	GATC	3 cut(s)	135, 693, 889
DpnII	GATC	3 cut(s)	133, 691, 887
DraI	TTTAAA	1 cut(s)	267
DraIII	CACNNNGTG	1 cut(s)	83
Eco147I	AGGCCT	1 cut(s)	778
Eco47I	GGWCC	1 cut(s)	677
Eco57I	CTGAAG	2 cut(s)	183, 575
EcoNI	CCTNNNNNAGG	1 cut(s)	772
EcoRII	CCWGG	2 cut(s)	369, 603
Esp3I	CGTCTC	1 cut(s)	898
FaeI	CATG	3 cut(s)	27, 233, 933
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	3 cut(s)	23, 229, 929
FbaI	TGATCA	1 cut(s)	691
FblI	GTMKAC	1 cut(s)	851
Fnu4HI	GCNGC	5 cut(s)	213, 500, 503, 551, 554
FokI	GGATG	2 cut(s)	272, 632
Fsp4HI	GCNGC	5 cut(s)	213, 500, 503, 551, 554
FspBI	CTAG	3 cut(s)	774, 858, 870
GluI	GCNGC	5 cut(s)	213, 500, 503, 551, 554
GsaI	CCCAGC	1 cut(s)	812
GsuI	CTGGAG	4 cut(s)	26, 91, 392, 783
HaeIII	GGCC	3 cut(s)	369, 408, 778
HgaI	GACGC	1 cut(s)	915
Hin1I	GRCGYC	1 cut(s)	907
Hin1II	CATG	3 cut(s)	27, 233, 933
HinfI	GANTC	7 cut(s)	56, 493, 538, 586, 819, 848, 926
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	77, 852
Hpy188I	TCNGA	6 cut(s)	61, 202, 415, 585, 664, 919
Hpy188III	TCNNGA	6 cut(s)	70, 316, 789, 870, 885, 930
Hpy8I	GTNNAC	2 cut(s)	77, 852
HpyAV	CCTTC	2 cut(s)	41, 158
HpyCH4V	TGCA	6 cut(s)	77, 101, 212, 235, 472, 641
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 550
HpyF3I	CTNAG	3 cut(s)	399, 582, 663
Hsp92I	GRCGYC	1 cut(s)	907
Hsp92II	CATG	3 cut(s)	27, 233, 933
Ksp22I	TGATCA	1 cut(s)	691
Kzo9I	GATC	3 cut(s)	133, 691, 887
LmnI	GCTCC	5 cut(s)	7, 485, 583, 640, 764
Lsp1109I	GCAGC	5 cut(s)	224, 511, 514, 562, 565
MabI	ACCWGGT	1 cut(s)	603
MaeI	CTAG	3 cut(s)	774, 858, 870
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	3 cut(s)	135, 693, 889
MbiI	CCGCTC	1 cut(s)	156
MboI	GATC	3 cut(s)	133, 691, 887
MboII	GAAGA	4 cut(s)	175, 215, 287, 581
MflI	RGATCY	1 cut(s)	887
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	8 cut(s)	175, 189, 247, 382, 443, 658, 718, 824
MlyI	GAGTC	1 cut(s)	857
MmeI	TCCRAC	2 cut(s)	44, 897
MseI	TTAA	3 cut(s)	266, 339, 657
MslI	CAYNNNNRTG	2 cut(s)	38, 699
MspR9I	CCNGG	2 cut(s)	371, 605
MvaI	CCWGG	2 cut(s)	371, 605
MwoI	GCNNNNNNNGC	2 cut(s)	98, 550
NdeII	GATC	3 cut(s)	133, 691, 887
NlaIII	CATG	3 cut(s)	27, 233, 933
NlaIV	GGNNCC	2 cut(s)	630, 766
PagI	TCATGA	1 cut(s)	929
PceI	AGGCCT	1 cut(s)	778
PfeI	GAWTC	5 cut(s)	56, 493, 538, 586, 819
PkrI	GCNGC	5 cut(s)	214, 501, 504, 552, 555
PleI	GAGTC	1 cut(s)	856
PpsI	GAGTC	1 cut(s)	856
Psp6I	CCWGG	2 cut(s)	369, 603
PspFI	CCCAGC	1 cut(s)	808
PspGI	CCWGG	2 cut(s)	369, 603
PspN4I	GGNNCC	2 cut(s)	630, 766
PspPI	GGNCC	1 cut(s)	677
PstI	CTGCAG	1 cut(s)	643
PstNI	CAGNNNCTG	1 cut(s)	638
PsuI	RGATCY	1 cut(s)	887
RseI	CAYNNNNRTG	2 cut(s)	38, 699
SaqAI	TTAA	3 cut(s)	266, 339, 657
SatI	GCNGC	5 cut(s)	213, 500, 503, 551, 554
Sau3AI	GATC	3 cut(s)	133, 691, 887
Sau96I	GGNCC	1 cut(s)	677
SchI	GAGTC	1 cut(s)	857
ScrFI	CCNGG	2 cut(s)	371, 605
SduI	GDGCHC	1 cut(s)	79
SexAI	ACCWGGT	1 cut(s)	603
SfcI	CTRYAG	2 cut(s)	639, 891
SinI	GGWCC	1 cut(s)	677
SmiI	ATTTAAAT	1 cut(s)	267
SmiMI	CAYNNNNRTG	2 cut(s)	38, 699
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
Sse9I	AATT	8 cut(s)	175, 189, 247, 382, 443, 658, 718, 824
SseBI	AGGCCT	1 cut(s)	778
SsiI	CCGC	1 cut(s)	156
SspI	AATATT	2 cut(s)	271, 337
SspMI	CTAG	3 cut(s)	774, 858, 870
StuI	AGGCCT	1 cut(s)	778
StyD4I	CCNGG	2 cut(s)	369, 603
SwaI	ATTTAAAT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	291
TasI	AATT	8 cut(s)	175, 189, 247, 382, 443, 658, 718, 824
TfiI	GAWTC	5 cut(s)	56, 493, 538, 586, 819
Tru1I	TTAA	3 cut(s)	266, 339, 657
Tru9I	TTAA	3 cut(s)	266, 339, 657
TscAI	CASTG	2 cut(s)	403, 868
TseI	GCWGC	5 cut(s)	212, 499, 502, 550, 553
TspDTI	ATGAA	1 cut(s)	551
TspRI	CASTG	2 cut(s)	403, 868
VneI	GTGCAC	1 cut(s)	75
VpaK11BI	GGWCC	1 cut(s)	677
XagI	CCTNNNNNAGG	1 cut(s)	772
XapI	RAATTY	5 cut(s)	175, 189, 382, 718, 824
XbaI	TCTAGA	1 cut(s)	869
XmiI	GTMKAC	1 cut(s)	851
XspI	CTAG	3 cut(s)	774, 858, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.