Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002555

Physical Location & Seq

Genomic Coordinates Forward (+)

2581433 .. 2592912

Gene Structure 11480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG028700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTGGAAGATGAGGCCCAGGAGGCCAAAGATTTTGGTGAAGATGGGGAACAGGAGGTGCAAGAAGGTTCTGAAAATGTGGAAGAAGAGGTTCATGTGGATTCTGAAGATGAGTGTATGCCAGAAGAGGAGAAGAACGGGCCACAATGTCAGGACTTGCCTGAGAAGAAATCAGGAGAATGGTGAAAATGAGCTGCCTCCAGAAGATGGTGCAAATGTCCTCCCTCCAGTTCATGGTGAAAATGTGATCCCTCCAGAAGATGATGCAAATGTGCAGCAGCAACCTGAAATTAGGGAAGTTCAAGTTCCAGAAAATGCAGAGGTGCCCCAGGTCATTCATCAGCAACCACAAGTCATTTCTGAGAATTTTAGTGAAAATGTGACAATTGATGTGGAACTCGTCACTGGAATGCAATCACAAACTTCAACAAATACTGTATTGCAACCACAGCGGAGTAACGTAGCTATCAATATTTTCAAGTTACGAGGATGGCGAATATGTGGCTTATTTGATAAAGAAAAAAATCTTATGATCCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

20.94

Weight (kDa)

9.96

Isoelectric Point (pI)

74.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097701 RchiOBHm_Chr6g0292791
rosa_laevigata	RLG00000015275 RLG00000021547 RLG00000030592
rosa_roxburghii	Rroxscaffold_1G00036680 Rroxscaffold_1G00041910 Rroxscaffold_4G00298950
rosa_samantha	Rh1BG038600 Rh1BG413300 Rh1CG442700 Rh1DG446300 Rh2AG239900 Rh2AG454600 Rh2BG458800 Rh2CG329000 Rh2CG441700 Rh2DG247800 Rh3AG319400 Rh3DG074200 Rh3DG253400 Rh4AG134000 Rh4CG324700 Rh4DG018300 Rh5BG409600 Rh5CG361100 Rh5CG434400 Rh5DG243200 Rh6AG347300 Rh6CG028700 Rh6CG148300 Rh6CG361100 Rh6DG027800 Rh7AG187400 Rh7BG242700
rosa_wichuraiana	Rw0G008450 Rw2G012270 Rw4G030630 Rw5G021380 Rw5G046710 Rw6G001850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	322
AccB7I	CCANNNNNTGG	2 cut(s)	206, 233
AciI	CCGC	1 cut(s)	451
AclWI	GGATC	2 cut(s)	241, 526
AcsI	RAATTY	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	125
AfiI	CCNNNNNNNGG	2 cut(s)	206, 233
AgsI	TTSAA	3 cut(s)	302, 426, 478
AjnI	CCWGG	2 cut(s)	17, 327
AluBI	AGCT	2 cut(s)	193, 464
AluI	AGCT	2 cut(s)	193, 464
AlwI	GGATC	2 cut(s)	241, 526
AoxI	GGCC	3 cut(s)	14, 23, 139
ApeKI	GCWGC	3 cut(s)	193, 274, 277
ApoI	RAATTY	1 cut(s)	364
Asp700I	GAANNNNTTC	1 cut(s)	89
AspS9I	GGNCC	2 cut(s)	15, 139
AsuHPI	GGTGA	3 cut(s)	49, 194, 248
BaeGI	GKGCMC	1 cut(s)	327
BanI	GGYRCC	1 cut(s)	322
BbvI	GCAGC	3 cut(s)	180, 286, 289
BccI	CCATC	3 cut(s)	37, 200, 483
BciT130I	CCWGG	2 cut(s)	19, 329
BglI	GCCNNNNNGGC	1 cut(s)	22
BisI	GCNGC	3 cut(s)	194, 275, 278
BlsI	GCNGC	3 cut(s)	195, 276, 279
Bme1390I	CCNGG	2 cut(s)	19, 329
BmgT120I	GGNCC	2 cut(s)	15, 139
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	2 cut(s)	19, 329
BmsI	GCATC	1 cut(s)	253
BpmI	CTGGAG	3 cut(s)	183, 210, 237
BsaJI	CCNNGG	2 cut(s)	17, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 233
Bse1I	ACTGG	2 cut(s)	227, 409
BseBI	CCWGG	2 cut(s)	19, 329
BseDI	CCNNGG	2 cut(s)	17, 327
BseGI	GGATG	1 cut(s)	494
BseLI	CCNNNNNNNGG	2 cut(s)	206, 233
BseMII	CTCAG	2 cut(s)	152, 351
BseNI	ACTGG	2 cut(s)	227, 409
BseRI	GAGGAG	1 cut(s)	142
BseSI	GKGCMC	1 cut(s)	327
BseXI	GCAGC	3 cut(s)	180, 286, 289
BsgI	GTGCAG	1 cut(s)	293
BshFI	GGCC	3 cut(s)	16, 25, 141
BshNI	GGYRCC	1 cut(s)	322
BslI	CCNNNNNNNGG	2 cut(s)	206, 233
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	3 cut(s)	16, 25, 141
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	2 cut(s)	246, 531
BspACI	CCGC	1 cut(s)	451
BspANI	GGCC	3 cut(s)	16, 25, 141
BspCNI	CTCAG	2 cut(s)	153, 352
BspLI	GGNNCC	1 cut(s)	324
BspPI	GGATC	2 cut(s)	241, 526
BspT107I	GGYRCC	1 cut(s)	322
BsrI	ACTGG	2 cut(s)	227, 409
BssECI	CCNNGG	2 cut(s)	17, 327
BssMI	GATC	2 cut(s)	246, 531
Bst2UI	CCWGG	2 cut(s)	19, 329
Bst4CI	ACNGT	1 cut(s)	436
Bst6I	CTCTTC	2 cut(s)	80, 119
BstDEI	CTNAG	2 cut(s)	161, 360
BstF5I	GGATG	1 cut(s)	494
BstKTI	GATC	2 cut(s)	249, 534
BstMBI	GATC	2 cut(s)	246, 531
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 448
BstNI	CCWGG	2 cut(s)	19, 329
BstSCI	CCNGG	2 cut(s)	17, 327
BstSLI	GKGCMC	1 cut(s)	327
BstV1I	GCAGC	3 cut(s)	180, 286, 289
BsuRI	GGCC	3 cut(s)	16, 25, 141
BtsCI	GGATG	1 cut(s)	494
BtsIMutI	CAGTG	1 cut(s)	402
Cfr13I	GGNCC	2 cut(s)	15, 139
CspCI	CAANNNNNGTGG	2 cut(s)	372, 407
CviAII	CATG	2 cut(s)	94, 233
CviJI	RGCY	6 cut(s)	16, 25, 141, 193, 464, 504
CviKI_1	RGCY	6 cut(s)	16, 25, 141, 193, 464, 504
DdeI	CTNAG	2 cut(s)	161, 360
DpnI	GATC	2 cut(s)	248, 533
DpnII	GATC	2 cut(s)	246, 531
Eam1104I	CTCTTC	2 cut(s)	80, 119
EarI	CTCTTC	2 cut(s)	80, 119
Eco57I	CTGAAG	1 cut(s)	125
EcoRII	CCWGG	2 cut(s)	17, 327
FaeI	CATG	2 cut(s)	97, 236
FaiI	YATR	5 cut(s)	95, 118, 234, 499, 530
FatI	CATG	2 cut(s)	93, 232
Fnu4HI	GCNGC	3 cut(s)	194, 275, 278
FokI	GGATG	1 cut(s)	501
Fsp4HI	GCNGC	3 cut(s)	194, 275, 278
GluI	GCNGC	3 cut(s)	194, 275, 278
GsuI	CTGGAG	3 cut(s)	183, 210, 237
HaeIII	GGCC	3 cut(s)	16, 25, 141
Hin1II	CATG	2 cut(s)	97, 236
HinfI	GANTC	1 cut(s)	100
HphI	GGTGA	3 cut(s)	49, 194, 248
Hpy188I	TCNGA	3 cut(s)	72, 105, 361
Hpy188III	TCNNGA	5 cut(s)	151, 173, 200, 254, 308
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	7 cut(s)	60, 212, 266, 274, 317, 412, 442
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 448
HpyF3I	CTNAG	2 cut(s)	161, 360
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	2 cut(s)	97, 236
Kzo9I	GATC	2 cut(s)	246, 531
Lsp1109I	GCAGC	3 cut(s)	180, 286, 289
LweI	GCATC	1 cut(s)	253
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	4 cut(s)	379, 400, 455, 480
MalI	GATC	2 cut(s)	248, 533
MboI	GATC	2 cut(s)	246, 531
MfeI	CAATTG	1 cut(s)	384
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	3 cut(s)	288, 364, 384
MroXI	GAANNNNTTC	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	451
MspR9I	CCNGG	2 cut(s)	19, 329
MunI	CAATTG	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	414
MvaI	CCWGG	2 cut(s)	19, 329
MwoI	GCNNNNNNNGC	2 cut(s)	22, 448
NdeII	GATC	2 cut(s)	246, 531
NlaIII	CATG	2 cut(s)	97, 236
NlaIV	GGNNCC	1 cut(s)	324
NmuCI	GTSAC	2 cut(s)	379, 400
PcsI	WCGNNNNNNNCGW	1 cut(s)	490
PctI	GAATGC	1 cut(s)	414
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	100
PflMI	CCANNNNNTGG	2 cut(s)	206, 233
PkrI	GCNGC	3 cut(s)	195, 276, 279
Psp6I	CCWGG	2 cut(s)	17, 327
PspGI	CCWGG	2 cut(s)	17, 327
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	2 cut(s)	15, 139
RseI	CAYNNNNRTG	1 cut(s)	407
SatI	GCNGC	3 cut(s)	194, 275, 278
Sau3AI	GATC	2 cut(s)	246, 531
Sau96I	GGNCC	2 cut(s)	15, 139
ScrFI	CCNGG	2 cut(s)	19, 329
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	9 cut(s)	59, 69, 92, 195, 286, 324, 333, 462, 466
SfaNI	GCATC	1 cut(s)	253
SfiI	GGCCNNNNNGGCC	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	407
Sse9I	AATT	3 cut(s)	288, 364, 384
SsiI	CCGC	1 cut(s)	451
SspI	AATATT	1 cut(s)	472
StyD4I	CCNGG	2 cut(s)	17, 327
TaaI	ACNGT	1 cut(s)	436
TaiI	ACGT	1 cut(s)	462
TasI	AATT	3 cut(s)	288, 364, 384
TfiI	GAWTC	1 cut(s)	100
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	2 cut(s)	379, 400
TseI	GCWGC	3 cut(s)	193, 274, 277
Tsp45I	GTSAC	2 cut(s)	379, 400
TspDTI	ATGAA	3 cut(s)	82, 221, 326
TspGWI	ACGGA	1 cut(s)	524
TspRI	CASTG	1 cut(s)	409
Van91I	CCANNNNNTGG	2 cut(s)	206, 233
XapI	RAATTY	1 cut(s)	364
XmnI	GAANNNNTTC	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.