Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002555

Physical Location & Seq

Genomic Coordinates Forward (+)

76322292 .. 76326566

Gene Structure 4275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021547

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCCAACTATTGGCGATATTTAAGGCTGGATGGTGATCCACACGTATACGGAGCTGGAAGAAGATATTTGCAAGATTATGAGTTGGATCGATACAATGATGAAGTGGATCATATATCCTACTTGGGTCATACCATTGATGATGTGTGGTTGGAAGATGATGCACCAGAAAATGTGGAAAATGAGGCCCAAGAGCTTGGTGAAGATGGGGAACAGGAGGTGCAAGAGGGTTCTGAAAATGAGAAAGAGGTTCATATGGATTATGAAGATGAGTATATGCCTGAAGAGGAGAATGGTGAAAATGAGCTGCCTCCAGAAGATGGTGCAAATCTCCTGCCTCTAGTTCATGGTGAAAATGTGTTCCCTCTAGAAGATGCTGCAAGTGTGCAGCAGCAGCCTGAAATTGGGGAAGTTCAAGTTCCAGAAAATGTAGAGGTGCCCCAAGTCATTCATCAACAACCACAAGTAATTTCTGAGAATTTTAGTCACAATGTGACAATTGATGTGGAACTCGTCACTGGAATGCAATCACAAACTTCAACAAATACTATATTTCAACCACAGCCACAAGGTGCCTCCAAGGTAGTAATCTCAGGAAAGAGATTCAAGTCACCAGCAAGAAGGATCAAACCAGGAAAGAAGCATGCAGACGGTTCTAGTTCTGCCACAAGCTCGGGGACTGATTCAAGAAAGCCCACATGCAAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

237

Amino Acids

26.58

Weight (kDa)

4.38

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097701 RchiOBHm_Chr6g0292791
rosa_laevigata	RLG00000015275 RLG00000021547 RLG00000030592
rosa_roxburghii	Rroxscaffold_1G00036680 Rroxscaffold_1G00041910 Rroxscaffold_4G00298950
rosa_samantha	Rh1BG038600 Rh1BG413300 Rh1CG442700 Rh1DG446300 Rh2AG239900 Rh2AG454600 Rh2BG458800 Rh2CG329000 Rh2CG441700 Rh2DG247800 Rh3AG319400 Rh3DG074200 Rh3DG253400 Rh4AG134000 Rh4CG324700 Rh4DG018300 Rh5BG409600 Rh5CG361100 Rh5CG434400 Rh5DG243200 Rh6AG347300 Rh6CG028700 Rh6CG148300 Rh6CG361100 Rh6DG027800 Rh7AG187400 Rh7BG242700
rosa_wichuraiana	Rw0G008450 Rw2G012270 Rw4G030630 Rw5G021380 Rw5G046710 Rw6G001850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	436, 572
AccB7I	CCANNNNNTGG	2 cut(s)	12, 320
AccI	GTMKAC	1 cut(s)	48
AclWI	GGATC	4 cut(s)	32, 96, 117, 632
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	478
AcuI	CTGAAG	1 cut(s)	303
AdeI	CACNNNGTG	2 cut(s)	493, 572
AfaI	GTAC	1 cut(s)	707
AfiI	CCNNNNNNNGG	3 cut(s)	12, 320, 404
AflIII	ACRYGT	1 cut(s)	43
AgsI	TTSAA	5 cut(s)	416, 540, 557, 607, 687
AjnI	CCWGG	1 cut(s)	631
AluBI	AGCT	4 cut(s)	56, 196, 307, 672
AluI	AGCT	4 cut(s)	56, 196, 307, 672
AlwI	GGATC	4 cut(s)	32, 96, 117, 632
Ama87I	CYCGRG	1 cut(s)	673
AoxI	GGCC	2 cut(s)	3, 186
ApeKI	GCWGC	5 cut(s)	307, 377, 388, 391, 394
ApoI	RAATTY	1 cut(s)	478
AspS9I	GGNCC	1 cut(s)	187
AsuHPI	GGTGA	5 cut(s)	47, 212, 308, 362, 603
AvaI	CYCGRG	1 cut(s)	673
BaeGI	GKGCMC	1 cut(s)	441
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	436, 572
BbvI	GCAGC	5 cut(s)	294, 364, 400, 403, 406
BccI	CCATC	3 cut(s)	26, 200, 314
BciT130I	CCWGG	1 cut(s)	633
BfaI	CTAG	3 cut(s)	341, 368, 657
BisI	GCNGC	5 cut(s)	308, 378, 389, 392, 395
BlsI	GCNGC	5 cut(s)	309, 379, 390, 393, 396
BmcAI	AGTACT	1 cut(s)	707
Bme1390I	CCNGG	1 cut(s)	633
BmeT110I	CYCGRG	1 cut(s)	673
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	2 cut(s)	438, 574
BmrFI	CCNGG	1 cut(s)	633
BmsI	GCATC	2 cut(s)	151, 364
BpmI	CTGGAG	1 cut(s)	297
Bsa29I	ATCGAT	1 cut(s)	91
BsaAI	YACGTR	1 cut(s)	46
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	579
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 320, 404
Bse1I	ACTGG	1 cut(s)	523
Bse8I	GATNNNNATC	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	633
BseCI	ATCGAT	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	579
BseGI	GGATG	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	3 cut(s)	12, 320, 404
BseMII	CTCAG	2 cut(s)	465, 606
BseNI	ACTGG	1 cut(s)	523
BseRI	GAGGAG	1 cut(s)	302
BseSI	GKGCMC	1 cut(s)	441
BseXI	GCAGC	5 cut(s)	294, 364, 400, 403, 406
BsgI	GTGCAG	1 cut(s)	407
BshFI	GGCC	2 cut(s)	5, 188
BshNI	GGYRCC	2 cut(s)	436, 572
BshVI	ATCGAT	1 cut(s)	91
BsiHKCI	CYCGRG	1 cut(s)	673
BslFI	GGGAC	1 cut(s)	691
BslI	CCNNNNNNNGG	3 cut(s)	12, 320, 404
BsmFI	GGGAC	1 cut(s)	691
BsmI	GAATGC	1 cut(s)	528
BsnI	GGCC	2 cut(s)	5, 188
BsoBI	CYCGRG	1 cut(s)	673
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp143I	GATC	4 cut(s)	37, 88, 109, 624
BspANI	GGCC	2 cut(s)	5, 188
BspCNI	CTCAG	2 cut(s)	466, 605
BspDI	ATCGAT	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	438, 574
BspPI	GGATC	4 cut(s)	32, 96, 117, 632
BspT107I	GGYRCC	2 cut(s)	436, 572
BsrI	ACTGG	1 cut(s)	523
BssECI	CCNNGG	1 cut(s)	579
BssMI	GATC	4 cut(s)	37, 88, 109, 624
BssNAI	GTATAC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	579
Bst1107I	GTATAC	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	633
Bst4CI	ACNGT	1 cut(s)	653
Bst6I	CTCTTC	1 cut(s)	279
BstBAI	YACGTR	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	645
BstDEI	CTNAG	2 cut(s)	474, 592
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	4 cut(s)	40, 91, 112, 627
BstMBI	GATC	4 cut(s)	37, 88, 109, 624
BstMWI	GCNNNNNNNGC	1 cut(s)	394
BstNI	CCWGG	1 cut(s)	633
BstNSI	RCATGY	2 cut(s)	647, 702
BstSCI	CCNGG	1 cut(s)	631
BstSLI	GKGCMC	1 cut(s)	441
BstV1I	GCAGC	5 cut(s)	294, 364, 400, 403, 406
BstXI	CCANNNNNNTGG	1 cut(s)	197
BstZ17I	GTATAC	1 cut(s)	49
Bsu15I	ATCGAT	1 cut(s)	91
BsuRI	GGCC	2 cut(s)	5, 188
BsuTUI	ATCGAT	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	516
Cac8I	GCNNGC	1 cut(s)	645
Cfr13I	GGNCC	1 cut(s)	187
ClaI	ATCGAT	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	706
CspCI	CAANNNNNGTGG	2 cut(s)	486, 521
CviAII	CATG	3 cut(s)	347, 644, 699
CviQI	GTAC	1 cut(s)	706
DdeI	CTNAG	2 cut(s)	474, 592
DpnI	GATC	4 cut(s)	39, 90, 111, 626
DpnII	GATC	4 cut(s)	37, 88, 109, 624
DraIII	CACNNNGTG	2 cut(s)	493, 572
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	579
Eco57I	CTGAAG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	673
EcoRII	CCWGG	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	579
ErhI	CCWWGG	1 cut(s)	579
FaeI	CATG	3 cut(s)	350, 647, 702
FaqI	GGGAC	1 cut(s)	691
FatI	CATG	3 cut(s)	346, 643, 698
FauNDI	CATATG	1 cut(s)	255
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	5 cut(s)	308, 378, 389, 392, 395
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	5 cut(s)	308, 378, 389, 392, 395
FspBI	CTAG	3 cut(s)	341, 368, 657
GluI	GCNGC	5 cut(s)	308, 378, 389, 392, 395
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	5, 188
Hin1II	CATG	3 cut(s)	350, 647, 702
HinfI	GANTC	2 cut(s)	603, 683
HphI	GGTGA	5 cut(s)	47, 212, 308, 362, 603
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	2 cut(s)	235, 475
Hpy188III	TCNNGA	5 cut(s)	314, 368, 422, 594, 687
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	615
HpyCH4III	ACNGT	1 cut(s)	653
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	9 cut(s)	73, 164, 223, 326, 380, 388, 526, 647, 702
HpyF10VI	GCNNNNNNNGC	1 cut(s)	394
HpyF3I	CTNAG	2 cut(s)	474, 592
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	3 cut(s)	350, 647, 702
Kzo9I	GATC	4 cut(s)	37, 88, 109, 624
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	5 cut(s)	294, 364, 400, 403, 406
LweI	GCATC	2 cut(s)	151, 364
MaeI	CTAG	3 cut(s)	341, 368, 657
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	4 cut(s)	485, 493, 514, 609
MalI	GATC	4 cut(s)	39, 90, 111, 626
MboI	GATC	4 cut(s)	37, 88, 109, 624
MboII	GAAGA	8 cut(s)	72, 75, 167, 215, 278, 296, 329, 383
MfeI	CAATTG	1 cut(s)	498
MhlI	GDGCHC	1 cut(s)	441
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	402, 468, 478, 498
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	66, 132
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	23
MslI	CAYNNNNRTG	1 cut(s)	521
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	633
MunI	CAATTG	1 cut(s)	498
Mva1269I	GAATGC	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	633
MwoI	GCNNNNNNNGC	1 cut(s)	394
NdeI	CATATG	1 cut(s)	255
NdeII	GATC	4 cut(s)	37, 88, 109, 624
NlaIII	CATG	3 cut(s)	350, 647, 702
NlaIV	GGNNCC	2 cut(s)	438, 574
NmuCI	GTSAC	4 cut(s)	485, 493, 514, 609
NspI	RCATGY	2 cut(s)	647, 702
PaeI	GCATGC	1 cut(s)	647
PctI	GAATGC	1 cut(s)	528
PfeI	GAWTC	2 cut(s)	603, 683
PflMI	CCANNNNNTGG	2 cut(s)	12, 320
PkrI	GCNGC	5 cut(s)	309, 379, 390, 393, 396
Ppu21I	YACGTR	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	631
PspGI	CCWGG	1 cut(s)	631
PspN4I	GGNNCC	2 cut(s)	438, 574
PspPI	GGNCC	1 cut(s)	187
RsaI	GTAC	1 cut(s)	707
RsaNI	GTAC	1 cut(s)	706
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	5 cut(s)	308, 378, 389, 392, 395
Sau3AI	GATC	4 cut(s)	37, 88, 109, 624
Sau96I	GGNCC	1 cut(s)	187
ScaI	AGTACT	1 cut(s)	707
ScrFI	CCNGG	1 cut(s)	633
SduI	GDGCHC	1 cut(s)	441
SfaNI	GCATC	2 cut(s)	151, 364
SmiMI	CAYNNNNRTG	1 cut(s)	521
SphI	GCATGC	1 cut(s)	647
Sse9I	AATT	4 cut(s)	402, 468, 478, 498
SspMI	CTAG	3 cut(s)	341, 368, 657
StyD4I	CCNGG	1 cut(s)	631
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	1 cut(s)	653
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	91
TasI	AATT	4 cut(s)	402, 468, 478, 498
TatI	WGTACW	1 cut(s)	705
TfiI	GAWTC	2 cut(s)	603, 683
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	4 cut(s)	485, 493, 514, 609
TseI	GCWGC	5 cut(s)	307, 377, 388, 391, 394
Tsp45I	GTSAC	4 cut(s)	485, 493, 514, 609
TspDTI	ATGAA	5 cut(s)	117, 242, 279, 335, 440
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	523
Van91I	CCANNNNNTGG	2 cut(s)	12, 320
XapI	RAATTY	1 cut(s)	478
XbaI	TCTAGA	1 cut(s)	367
XceI	RCATGY	2 cut(s)	647, 702
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	3 cut(s)	341, 368, 657
ZrmI	AGTACT	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.