Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002555

Physical Location & Seq

Genomic Coordinates Forward (+)

5106855 .. 5108298

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG074200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGATTGATCATGATGTTTCCCAGCACCAGTACCCTCGCGGCCTCGCCTTGGTGGCTAGTGCTTTTGCATTCTCTCTTGGACTCGTCTATGGAAACATTAAGAATGCTCAGGGTCTTCAAGTGTTGAGGTTTGTGGAACAACCTGACAGCAATGAGAAAATTCTGGATCAAAAGACCAAAGTCAAGTTCCAAATTATGAGTCTGAAGGTCAAAGCTGAAACAGACTATGCTCCTGAGCTGTTTGATCACTTGATGAGCAAAATGATCAAAGTAGCAGTTGAGCGAATTTTGCGGGTTGTATTTTTAGATGCAGAGCACCCTACTCCTGCTCATGTTGGAGAAGGCCTTGTAATTGATGAATGGGTGTTGAAAACTGTAGGTGTTGTGGATGTGAAGCAAGTAGATTTCAATGGCCTTGATAAGGCTCCAACGGCCTTGATTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0016020 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

148

Amino Acids

16.54

Weight (kDa)

5.92

Isoelectric Point (pI)

24.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097701 RchiOBHm_Chr6g0292791
rosa_laevigata	RLG00000015275 RLG00000021547 RLG00000030592
rosa_roxburghii	Rroxscaffold_1G00036680 Rroxscaffold_1G00041910 Rroxscaffold_4G00298950
rosa_samantha	Rh1BG038600 Rh1BG413300 Rh1CG442700 Rh1DG446300 Rh2AG239900 Rh2AG454600 Rh2BG458800 Rh2CG329000 Rh2CG441700 Rh2DG247800 Rh3AG319400 Rh3DG074200 Rh3DG253400 Rh4AG134000 Rh4CG324700 Rh4DG018300 Rh5BG409600 Rh5CG361100 Rh5CG434400 Rh5DG243200 Rh6AG347300 Rh6CG028700 Rh6CG148300 Rh6CG361100 Rh6DG027800 Rh7AG187400 Rh7BG242700
rosa_wichuraiana	Rw0G008450 Rw2G012270 Rw4G030630 Rw5G021380 Rw5G046710 Rw6G001850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	39
AciI	CCGC	2 cut(s)	39, 292
AclWI	GGATC	1 cut(s)	174
AcsI	RAATTY	2 cut(s)	159, 285
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	49, 421
AgsI	TTSAA	3 cut(s)	119, 370, 409
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	2 cut(s)	215, 238
AluI	AGCT	2 cut(s)	215, 238
Alw21I	GWGCWC	1 cut(s)	318
AlwI	GGATC	1 cut(s)	174
AoxI	GGCC	4 cut(s)	40, 343, 412, 432
ApoI	RAATTY	2 cut(s)	159, 285
ArsI	GACNNNNNNTTYG	2 cut(s)	184, 216
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	318
BclI	TGATCA	3 cut(s)	7, 244, 264
BfaI	CTAG	1 cut(s)	57
BfmI	CTRYAG	1 cut(s)	375
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	426
BmsI	GCATC	1 cut(s)	298
BoxI	GACNNNNGTC	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	107
Bpu10I	CCTNAGC	2 cut(s)	108, 234
BsaJI	CCNNGG	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 421
Bse1I	ACTGG	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	157
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	2 cut(s)	49, 421
BseMI	GCAATG	1 cut(s)	157
BseMII	CTCAG	2 cut(s)	122, 225
BseNI	ACTGG	1 cut(s)	28
BseYI	CCCAGC	1 cut(s)	21
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	4 cut(s)	42, 345, 414, 434
BsiHKAI	GWGCWC	1 cut(s)	318
BslI	CCNNNNNNNGG	2 cut(s)	49, 421
BsmI	GAATGC	2 cut(s)	68, 109
BsnI	GGCC	4 cut(s)	42, 345, 414, 434
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	4 cut(s)	7, 166, 244, 264
BspACI	CCGC	2 cut(s)	39, 292
BspANI	GGCC	4 cut(s)	42, 345, 414, 434
BspCNI	CTCAG	2 cut(s)	121, 226
BspFNI	CGCG	1 cut(s)	39
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	426
BspPI	GGATC	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	4 cut(s)	7, 166, 244, 264
BssT1I	CCWWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	376
BstDEI	CTNAG	2 cut(s)	108, 234
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	1 cut(s)	394
BstFNI	CGCG	1 cut(s)	39
BstKTI	GATC	4 cut(s)	10, 169, 247, 267
BstMBI	GATC	4 cut(s)	7, 166, 244, 264
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 289, 431
BstPAI	GACNNNNGTC	1 cut(s)	179
BstSFI	CTRYAG	1 cut(s)	375
BstUI	CGCG	1 cut(s)	39
BstV2I	GAAGAC	1 cut(s)	107
BsuRI	GGCC	4 cut(s)	42, 345, 414, 434
BtsCI	GGATG	1 cut(s)	394
CciI	TCATGA	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	2 cut(s)	11, 332
CviJI	RGCY	8 cut(s)	42, 56, 215, 238, 345, 414, 425, 434
CviKI_1	RGCY	8 cut(s)	42, 56, 215, 238, 345, 414, 425, 434
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	2 cut(s)	108, 234
DpnI	GATC	4 cut(s)	9, 168, 246, 266
DpnII	GATC	4 cut(s)	7, 166, 244, 264
Eco130I	CCWWGG	1 cut(s)	48
Eco147I	AGGCCT	1 cut(s)	345
Eco57I	CTGAAG	1 cut(s)	224
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	2 cut(s)	14, 335
FaiI	YATR	5 cut(s)	12, 90, 197, 228, 333
FatI	CATG	2 cut(s)	10, 331
FauI	CCCGC	1 cut(s)	285
FbaI	TGATCA	3 cut(s)	7, 244, 264
Fnu4HI	GCNGC	1 cut(s)	40
FokI	GGATG	1 cut(s)	401
Fsp4HI	GCNGC	1 cut(s)	40
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	1 cut(s)	40
GsaI	CCCAGC	1 cut(s)	25
HaeIII	GGCC	4 cut(s)	42, 345, 414, 434
Hin1II	CATG	2 cut(s)	14, 335
HinfI	GANTC	2 cut(s)	81, 199
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	3 cut(s)	11, 164, 233
HpyAV	CCTTC	2 cut(s)	199, 335
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4V	TGCA	2 cut(s)	68, 311
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 289, 431
HpyF3I	CTNAG	2 cut(s)	108, 234
Hsp92II	CATG	2 cut(s)	14, 335
Ksp22I	TGATCA	3 cut(s)	7, 244, 264
Kzo9I	GATC	4 cut(s)	7, 166, 244, 264
LmnI	GCTCC	2 cut(s)	235, 430
LpnPI	CCDG	7 cut(s)	35, 41, 95, 149, 156, 246, 339
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	1 cut(s)	57
MalI	GATC	4 cut(s)	9, 168, 246, 266
MboI	GATC	4 cut(s)	7, 166, 244, 264
MboII	GAAGA	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	4 cut(s)	159, 192, 285, 351
MlyI	GAGTC	2 cut(s)	75, 208
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	3 cut(s)	45, 53, 120
MseI	TTAA	2 cut(s)	99, 445
Mva1269I	GAATGC	2 cut(s)	68, 109
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	3 cut(s)	53, 289, 431
NdeII	GATC	4 cut(s)	7, 166, 244, 264
NlaIII	CATG	2 cut(s)	14, 335
NlaIV	GGNNCC	1 cut(s)	426
PagI	TCATGA	1 cut(s)	10
PceI	AGGCCT	1 cut(s)	345
PctI	GAATGC	2 cut(s)	68, 109
PkrI	GCNGC	1 cut(s)	41
PleI	GAGTC	2 cut(s)	75, 207
PpsI	GAGTC	2 cut(s)	75, 207
PshAI	GACNNNNGTC	1 cut(s)	179
PspFI	CCCAGC	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	426
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	2 cut(s)	99, 445
SatI	GCNGC	1 cut(s)	40
Sau3AI	GATC	4 cut(s)	7, 166, 244, 264
SchI	GAGTC	2 cut(s)	75, 208
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	6 cut(s)	131, 145, 210, 217, 240, 382
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	375
Sse9I	AATT	4 cut(s)	159, 192, 285, 351
SseBI	AGGCCT	1 cut(s)	345
SsiI	CCGC	2 cut(s)	39, 292
SspMI	CTAG	1 cut(s)	57
StuI	AGGCCT	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	376
TasI	AATT	4 cut(s)	159, 192, 285, 351
TauI	GCSGC	1 cut(s)	42
Tru1I	TTAA	2 cut(s)	99, 445
Tru9I	TTAA	2 cut(s)	99, 445
TspDTI	ATGAA	1 cut(s)	372
XagI	CCTNNNNNAGG	1 cut(s)	419
XapI	RAATTY	2 cut(s)	159, 285
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.