Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002555

Physical Location & Seq

Genomic Coordinates Reverse (-)

5138113 .. 5140256

Gene Structure 2144 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG038600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCAATCTATAACATTTCAGGTTTGGTGGGTAGATGGTGATAGACTGTCCCTTGTTCCAGCCTCAGAACAAAGAAAGCTTTTCAGTGGGGATTGCTACATTCTGCAATATACATATCTTGGCAACGAAAGGGGTGAGAATCTATTTTATGCAAGGCTTGGTGGTGGGAGTGTAATGGAAGATAGAACAGATACTATCTCTCATATGAATGCCATGGTTGAGTCAAGCAGGGGGAATCCTGTTGTGGCTCAAATTATGGAGAACAAGGAGCCATCTCAATTTTTTTCAATTTTACAGACATTAATTGTTTTTAAGGGAGGCAGGAGTCAACGATACAAGAAGTTTGTGGCAGAAAAGGTTGATACAGTTTCAGGCTCTTTGAACTCTTCCTATTGTTACATCCTGCAAACTGGTACATCTGTTATCACTTGGATTGGGAATCTCTCCTCTAGCAGAGATCATGATCTTCTTGACAGAATGCTGGAGCTAATAAATGCAGAGTATGCAAGAGGAAAAAAAATAAAAGGATACATAGATGATCCACATTTGTTTATGTTGAGCGGAACTGAAGGTGATTTCAAGGTGCAAGAGATATACAATTTCACACAGGATGATTTAAATACTGAAGATGTGTTAGTCCTCGACTGCCACATTGAGATATATGTCTGGATTGGAAGCCACTCAAATATTAAGTCAAAGCAACAAGCCCTTACTCTTGGCCTGGTAAGTACATTACACCTGAACTTCTTAGTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04666 ko04810 ko05203 map04666 map04810 map05203

Pfam Domains

Protein Families

Gelsolin VHP

Protein Analysis

252

Amino Acids

28.59

Weight (kDa)

5.38

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gelsolin	PF00626	194 - 238	7.8e-09	Gelsolin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097701 RchiOBHm_Chr6g0292791
rosa_laevigata	RLG00000015275 RLG00000021547 RLG00000030592
rosa_roxburghii	Rroxscaffold_1G00036680 Rroxscaffold_1G00041910 Rroxscaffold_4G00298950
rosa_samantha	Rh1BG038600 Rh1BG413300 Rh1CG442700 Rh1DG446300 Rh2AG239900 Rh2AG454600 Rh2BG458800 Rh2CG329000 Rh2CG441700 Rh2DG247800 Rh3AG319400 Rh3DG074200 Rh3DG253400 Rh4AG134000 Rh4CG324700 Rh4DG018300 Rh5BG409600 Rh5CG361100 Rh5CG434400 Rh5DG243200 Rh6AG347300 Rh6CG028700 Rh6CG148300 Rh6CG361100 Rh6DG027800 Rh7AG187400 Rh7BG242700
rosa_wichuraiana	Rw0G008450 Rw2G012270 Rw4G030630 Rw5G021380 Rw5G046710 Rw6G001850

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	561
AciI	CCGC	1 cut(s)	561
AclWI	GGATC	1 cut(s)	533
AcuI	CTGAAG	2 cut(s)	588, 645
AfaI	GTAC	2 cut(s)	415, 730
AgsI	TTSAA	3 cut(s)	288, 382, 580
AjnI	CCWGG	1 cut(s)	720
AluBI	AGCT	2 cut(s)	79, 487
AluI	AGCT	2 cut(s)	79, 487
AlwI	GGATC	1 cut(s)	533
AoxI	GGCC	1 cut(s)	718
ArsI	GACNNNNNNTTYG	2 cut(s)	677, 709
AseI	ATTAAT	1 cut(s)	302
AsuHPI	GGTGA	3 cut(s)	50, 146, 584
BaeI	ACNNNNGTAYC	2 cut(s)	405, 438
BccI	CCATC	2 cut(s)	29, 280
BciT130I	CCWGG	1 cut(s)	722
BciVI	GTATCC	1 cut(s)	521
BfaI	CTAG	1 cut(s)	450
BfuI	GTATCC	1 cut(s)	521
Bme1390I	CCNGG	1 cut(s)	722
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	722
BpmI	CTGGAG	1 cut(s)	503
BsaBI	GATNNNNATC	1 cut(s)	462
BsaJI	CCNNGG	1 cut(s)	213
Bse1I	ACTGG	1 cut(s)	415
Bse8I	GATNNNNATC	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	722
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	399, 616
BseJI	GATNNNNATC	1 cut(s)	462
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	1 cut(s)	436
BshFI	GGCC	1 cut(s)	720
BslFI	GGGAC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	34
BsmI	GAATGC	2 cut(s)	214, 483
BsnI	GGCC	1 cut(s)	720
Bsp143I	GATC	3 cut(s)	457, 463, 538
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	1 cut(s)	561
BspANI	GGCC	1 cut(s)	720
BspCNI	CTCAG	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	533
BsrBI	CCGCTC	1 cut(s)	561
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	3 cut(s)	457, 463, 538
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	722
Bst4CI	ACNGT	2 cut(s)	48, 367
Bst6I	CTCTTC	1 cut(s)	391
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstDEI	CTNAG	2 cut(s)	64, 748
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	2 cut(s)	399, 616
BstKTI	GATC	3 cut(s)	460, 466, 541
BstMBI	GATC	3 cut(s)	457, 463, 538
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNI	CCWGG	1 cut(s)	722
BstSCI	CCNGG	1 cut(s)	720
BsuI	GTATCC	1 cut(s)	521
BsuRI	GGCC	1 cut(s)	720
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	2 cut(s)	399, 616
BtsIMutI	CAGTG	1 cut(s)	91
CciI	TCATGA	1 cut(s)	460
Csp6I	GTAC	2 cut(s)	414, 729
CviAII	CATG	2 cut(s)	214, 461
CviQI	GTAC	2 cut(s)	414, 729
DdeI	CTNAG	2 cut(s)	64, 748
DpnI	GATC	3 cut(s)	459, 465, 540
DpnII	GATC	3 cut(s)	457, 463, 538
DraI	TTTAAA	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	213
Eco57I	CTGAAG	2 cut(s)	588, 645
EcoRII	CCWGG	1 cut(s)	720
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	2 cut(s)	217, 464
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	2 cut(s)	213, 460
FauNDI	CATATG	1 cut(s)	204
FokI	GGATG	2 cut(s)	386, 623
FspBI	CTAG	1 cut(s)	450
GsuI	CTGGAG	1 cut(s)	503
HaeIII	GGCC	1 cut(s)	720
Hin1II	CATG	2 cut(s)	217, 464
HincII	GTYRAC	1 cut(s)	329
HindII	GTYRAC	1 cut(s)	329
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	5 cut(s)	139, 221, 235, 325, 439
HphI	GGTGA	3 cut(s)	50, 146, 584
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	3 cut(s)	461, 470, 667
Hpy8I	GTNNAC	1 cut(s)	329
HpyAV	CCTTC	1 cut(s)	563
HpyCH4III	ACNGT	2 cut(s)	48, 367
HpyCH4V	TGCA	7 cut(s)	4, 106, 152, 406, 497, 506, 586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	2 cut(s)	64, 748
Hsp92II	CATG	2 cut(s)	217, 464
Kzo9I	GATC	3 cut(s)	457, 463, 538
LmnI	GCTCC	2 cut(s)	268, 484
MaeI	CTAG	1 cut(s)	450
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	3 cut(s)	459, 465, 540
MbiI	CCGCTC	1 cut(s)	561
MboI	GATC	3 cut(s)	457, 463, 538
MboII	GAAGA	4 cut(s)	191, 378, 458, 638
MluCI	AATT	5 cut(s)	252, 278, 288, 303, 598
MlyI	GAGTC	2 cut(s)	230, 334
MnlI	CCTC	5 cut(s)	73, 311, 457, 503, 650
MseI	TTAA	4 cut(s)	302, 312, 617, 690
MslI	CAYNNNNRTG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	722
Mva1269I	GAATGC	2 cut(s)	214, 483
MvaI	CCWGG	1 cut(s)	722
MwoI	GCNNNNNNNGC	1 cut(s)	503
NcoI	CCATGG	1 cut(s)	213
NdeI	CATATG	1 cut(s)	204
NdeII	GATC	3 cut(s)	457, 463, 538
NlaIII	CATG	2 cut(s)	217, 464
NlaIV	GGNNCC	1 cut(s)	270
PagI	TCATGA	1 cut(s)	460
PctI	GAATGC	2 cut(s)	214, 483
PfeI	GAWTC	3 cut(s)	139, 235, 439
PleI	GAGTC	2 cut(s)	229, 333
PpsI	GAGTC	2 cut(s)	229, 333
PshBI	ATTAAT	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	720
PspGI	CCWGG	1 cut(s)	720
PspN4I	GGNNCC	1 cut(s)	270
RsaI	GTAC	2 cut(s)	415, 730
RsaNI	GTAC	2 cut(s)	414, 729
RseI	CAYNNNNRTG	1 cut(s)	207
SaqAI	TTAA	4 cut(s)	302, 312, 617, 690
Sau3AI	GATC	3 cut(s)	457, 463, 538
SchI	GAGTC	2 cut(s)	230, 334
ScrFI	CCNGG	1 cut(s)	722
SetI	ASST	7 cut(s)	24, 81, 360, 489, 574, 585, 741
SmiI	ATTTAAAT	1 cut(s)	618
SmiMI	CAYNNNNRTG	1 cut(s)	207
Sse9I	AATT	5 cut(s)	252, 278, 288, 303, 598
SsiI	CCGC	1 cut(s)	561
SspI	AATATT	1 cut(s)	688
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	1 cut(s)	720
StyI	CCWWGG	1 cut(s)	213
SwaI	ATTTAAAT	1 cut(s)	618
TaaI	ACNGT	2 cut(s)	48, 367
TaqI	TCGA	1 cut(s)	642
TasI	AATT	5 cut(s)	252, 278, 288, 303, 598
TatI	WGTACW	1 cut(s)	728
TfiI	GAWTC	3 cut(s)	139, 235, 439
Tru1I	TTAA	4 cut(s)	302, 312, 617, 690
Tru9I	TTAA	4 cut(s)	302, 312, 617, 690
TscAI	CASTG	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	91
VspI	ATTAAT	1 cut(s)	302
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.