RchiOBHm_Chr1g0327231

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
15977221 .. 15979820
2600 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1440 bp
ATGGGTTCAACACAACTAGGAGCCAAAGAACTCCATGCAGTCTGTCTCCCTTTCCCAGCACAAGGCCATGTTAACCCTATGATGCAATTAGCCAAGCTTCTGTATTCCAGGGGATTCCAGATAACCTTCGTCAACACCGAGTTCAACCACCGGCGTTTAATCCGGTCCAGAGGCTCTGATTCCGTCAAGGGACTACCGGACTTCCAATTTGCGACCATACCGGACGGGCTGCCACCTTCAGATAAAGATGCAACCCAAGATGTTCCAACTCTATGCGACTCCATCAGGAAAACATGTCTAGGCCCTTTCAAGGAGCTGGTGACTAAACGCAATTCCTCGTCTGAAGTGCCACATATTACTTGTATAGTTTCTGACGGGATCATGGGATTTGGGAGGGAAGTTGCTAAGGAAATGGGGATTCCTGGGGTTCAGCTTTGGACTTCTTCTGCTTGTGGCTTCATGGGGTACCTGCAATACGGCGAACTCGTCAAACGAGGCATTGTTCCATTCAAAGATGAAAGTTTCATGCAAGATGGTACACTCGATGAGCCAATTGATTGGATCCCAGGCATGAGGAATATGAGGCTCAAGGACATCCCTAGCTTTATCAGAGTCACTAATGTCAATGATATAATGTTCGACTACTTGAGATCTGAAGCACAACACTGCTTGAAATCCTCTGCAATCATCTTCAACACGTTTGACGAATTGGAGCATGAAGTGTTAGAAGAAATCTCAGCCATGTTTCCCAACATTTACACAATAGGTCCACTTGCTTTGCTTGGTAGGCATGGGCCCGAAAGCAATTTGGTCAAGTCCCTAAGCTCAGGCTTATGGAAAGAAGACGCAAAATGCATCGAATGGCTTGACAAACAGAAACCTGATTCGGTTGTGTATGTGAATTATGGGAGCATAGCTATGATGACAGACCAACATTTGAAAGAATTTGCATGGGGACTTGCAAATAGCAAGCACCATTTTTTGTGGATTGTCAGGCCTGATGTTGTAAAAGGTGATTCGGTAGTTTTACCCGAAGAATTTTTTGAGGAGATAAAGGATAGGGGTTACGTAACAAGTTGGTGCCCACAGGAGCAAGTGCTAGCACATCCATCAGTTGGGGTTTTTCTAACACATTGTGGTTGGAATTCTACGATTGAAACTATATCGGAGGGAGTGCCTGTACTTTGCTGGCCTTTCCGTTCTGAGCAACTTACAAATTGCCGTTTCCTGTGTACTGATTGGGGAATTGGTATGGAGGTAAACAATGATGTTAAGTGCAATGACATTGAAGCACTTGTTAAGGAAATGCTGGAAGGGGAGAAAGGCATGAAGATGAGGCGAAAGGCAGAGGAATGGAAGAAGAAAGCAATAGCAGCTACTGACACTGGAGGATCATCGTACAATAATTTTGAGAGACTGATTAAGGTGGCTCTTCAATAA

Protein Analysis

479

Amino Acids

53.95

Weight (kDa)

5.64

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 13 - 60 4.4e-08 Glycosyltransferase, N-terminal domain
UDPGT PF00201 174 - 440 1.4e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 477
Acc65I GGTACC 1 cut(s) 465
AccB1I GGYRCC 2 cut(s) 465, 1080
AccB7I CCANNNNNTGG 1 cut(s) 1115
AclWI GGATC 4 cut(s) 386, 556, 569, 1399
AcsI RAATTY 3 cut(s) 944, 1037, 1144
AcuI CTGAAG 3 cut(s) 222, 363, 675
AdeI CACNNNGTG 1 cut(s) 1136
AfaI GTAC 5 cut(s) 467, 538, 1182, 1234, 1400
AfiI CCNNNNNNNGG 3 cut(s) 62, 310, 1115
AflIII ACRYGT 2 cut(s) 293, 696
AjnI CCWGG 3 cut(s) 107, 421, 565
AluBI AGCT 7 cut(s) 97, 316, 433, 603, 825, 917, 1376
AluI AGCT 7 cut(s) 97, 316, 433, 603, 825, 917, 1376
Alw26I GTCTC 2 cut(s) 50, 1408
AlwI GGATC 4 cut(s) 386, 556, 569, 1399
AlwNI CAGNNNCTG 1 cut(s) 1379
AoxI GGCC 5 cut(s) 64, 301, 794, 995, 1190
ApaI GGGCCC 1 cut(s) 798
ApeKI GCWGC 2 cut(s) 229, 1373
ApoI RAATTY 3 cut(s) 944, 1037, 1144
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
Asp718I GGTACC 1 cut(s) 465
AspS9I GGNCC 5 cut(s) 165, 302, 767, 794, 795
AsuHPI GGTGA 2 cut(s) 331, 1025
AsuNHI GCTAGC 1 cut(s) 1099
AvaII GGWCC 2 cut(s) 165, 767
BaeGI GKGCMC 2 cut(s) 798, 1085
BamHI GGATCC 1 cut(s) 561
BanI GGYRCC 2 cut(s) 465, 1080
BanII GRGCYC 1 cut(s) 798
BbsI GAAGAC 1 cut(s) 849
BbvI GCAGC 2 cut(s) 216, 1385
BccI CCATC 3 cut(s) 290, 527, 1117
BceAI ACGGC 2 cut(s) 493, 1206
BciT130I CCWGG 3 cut(s) 109, 423, 567
BcoDI GTCTC 2 cut(s) 50, 1408
BfaI CTAG 4 cut(s) 17, 299, 600, 1100
BfuAI ACCTGC 1 cut(s) 477
BglII AGATCT 1 cut(s) 650
BisI GCNGC 2 cut(s) 230, 1374
BlsI GCNGC 2 cut(s) 231, 1375
Bme1390I CCNGG 3 cut(s) 109, 423, 567
Bme18I GGWCC 2 cut(s) 165, 767
BmgT120I GGNCC 5 cut(s) 165, 302, 767, 794, 795
BmiI GGNNCC 5 cut(s) 22, 467, 563, 796, 1082
BmrFI CCNGG 3 cut(s) 109, 423, 567
BmsI GCATC 3 cut(s) 72, 238, 864
BmtI GCTAGC 1 cut(s) 1103
BpiI GAAGAC 1 cut(s) 849
BpmI CTGGAG 1 cut(s) 1407
Bpu10I CCTNAGC 3 cut(s) 405, 821, 826
BpuEI CTTGAG 2 cut(s) 572, 667
BsaAI YACGTR 1 cut(s) 1069
BsaJI CCNNGG 3 cut(s) 108, 422, 565
BsaWI WCCGGW 3 cut(s) 162, 196, 220
BsaXI ACNNNNNCTCC 2 cut(s) 1164, 1194
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 310, 1115
Bse118I RCCGGY 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 1390
Bse3DI GCAATG 1 cut(s) 1285
BseBI CCWGG 3 cut(s) 109, 423, 567
BseDI CCNNGG 3 cut(s) 108, 422, 565
BseGI GGATG 2 cut(s) 594, 1105
BseLI CCNNNNNNNGG 3 cut(s) 62, 310, 1115
BseMI GCAATG 1 cut(s) 1285
BseMII CTCAG 3 cut(s) 750, 840, 1194
BseNI ACTGG 1 cut(s) 1390
BseRI GAGGAG 1 cut(s) 1061
BseSI GKGCMC 2 cut(s) 798, 1085
BseXI GCAGC 2 cut(s) 216, 1385
BseYI CCCAGC 1 cut(s) 55
BshFI GGCC 5 cut(s) 66, 303, 796, 997, 1192
BshNI GGYRCC 2 cut(s) 465, 1080
BsiSI CCGG 4 cut(s) 151, 163, 197, 221
BslFI GGGAC 3 cut(s) 204, 802, 969
BslI CCNNNNNNNGG 3 cut(s) 62, 310, 1115
BsmAI GTCTC 2 cut(s) 50, 1408
BsmFI GGGAC 3 cut(s) 204, 802, 969
BsnI GGCC 5 cut(s) 66, 303, 796, 997, 1192
Bsp120I GGGCCC 1 cut(s) 794
Bsp1286I GDGCHC 2 cut(s) 798, 1085
Bsp143I GATC 4 cut(s) 378, 561, 650, 1391
BspANI GGCC 5 cut(s) 66, 303, 796, 997, 1192
BspCNI CTCAG 3 cut(s) 749, 839, 1195
BspLI GGNNCC 5 cut(s) 22, 467, 563, 796, 1082
BspMI ACCTGC 1 cut(s) 477
BspOI GCTAGC 1 cut(s) 1103
BspPI GGATC 4 cut(s) 386, 556, 569, 1399
BspQI GCTCTTC 1 cut(s) 1437
BspT107I GGYRCC 2 cut(s) 465, 1080
BsrDI GCAATG 1 cut(s) 1285
BsrFI RCCGGY 1 cut(s) 150
BsrI ACTGG 1 cut(s) 1390
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 3 cut(s) 108, 422, 565
BssMI GATC 4 cut(s) 378, 561, 650, 1391
Bst2UI CCWGG 3 cut(s) 109, 423, 567
Bst6I CTCTTC 1 cut(s) 1437
BstBAI YACGTR 1 cut(s) 1069
BstC8I GCNNGC 3 cut(s) 971, 1101, 1190
BstDEI CTNAG 5 cut(s) 405, 736, 821, 826, 1203
BstF5I GGATG 2 cut(s) 594, 1105
BstKTI GATC 4 cut(s) 381, 564, 653, 1394
BstMAI GTCTC 2 cut(s) 50, 1408
BstMBI GATC 4 cut(s) 378, 561, 650, 1391
BstMWI GCNNNNNNNGC 2 cut(s) 787, 1373
BstNI CCWGG 3 cut(s) 109, 423, 567
BstNSI RCATGY 1 cut(s) 297
BstSCI CCNGG 3 cut(s) 107, 421, 565
BstSLI GKGCMC 2 cut(s) 798, 1085
BstSNI TACGTA 1 cut(s) 1069
BstV1I GCAGC 2 cut(s) 216, 1385
BstV2I GAAGAC 1 cut(s) 849
BstX2I RGATCY 2 cut(s) 561, 650
BstXI CCANNNNNNTGG 1 cut(s) 558
BstYI RGATCY 2 cut(s) 561, 650
BsuRI GGCC 5 cut(s) 66, 303, 796, 997, 1192
BtsCI GGATG 2 cut(s) 594, 1105
BtsI GCAGTG 1 cut(s) 664
BtsIMutI CAGTG 2 cut(s) 664, 1383
BveI ACCTGC 1 cut(s) 477
Cac8I GCNNGC 3 cut(s) 971, 1101, 1190
CaiI CAGNNNCTG 1 cut(s) 1379
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 5 cut(s) 165, 302, 767, 794, 795
CseI GACGC 1 cut(s) 854
Csp6I GTAC 5 cut(s) 466, 537, 1181, 1233, 1399
CspCI CAANNNNNGTGG 2 cut(s) 759, 794
CviQI GTAC 5 cut(s) 466, 537, 1181, 1233, 1399
DdeI CTNAG 5 cut(s) 405, 736, 821, 826, 1203
DpnI GATC 4 cut(s) 380, 563, 652, 1393
DpnII GATC 4 cut(s) 378, 561, 650, 1391
DraIII CACNNNGTG 1 cut(s) 1136
Eam1104I CTCTTC 1 cut(s) 1437
EarI CTCTTC 1 cut(s) 1437
Eco105I TACGTA 1 cut(s) 1069
Eco147I AGGCCT 1 cut(s) 997
Eco24I GRGCYC 1 cut(s) 798
Eco47I GGWCC 2 cut(s) 165, 767
Eco57I CTGAAG 3 cut(s) 222, 363, 675
EcoO109I RGGNCCY 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 1144
EcoRII CCWGG 3 cut(s) 107, 421, 565
EcoT22I ATGCAT 1 cut(s) 857
EcoT38I GRGCYC 1 cut(s) 798
FaqI GGGAC 3 cut(s) 204, 802, 969
Fnu4HI GCNGC 2 cut(s) 230, 1374
FokI GGATG 2 cut(s) 581, 1092
FriOI GRGCYC 1 cut(s) 798
Fsp4HI GCNGC 2 cut(s) 230, 1374
FspBI CTAG 4 cut(s) 17, 299, 600, 1100
GluI GCNGC 2 cut(s) 230, 1374
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 1407
HaeIII GGCC 5 cut(s) 66, 303, 796, 997, 1192
HapII CCGG 4 cut(s) 151, 163, 197, 221
HgaI GACGC 1 cut(s) 854
HincII GTYRAC 2 cut(s) 73, 133
HindII GTYRAC 2 cut(s) 73, 133
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 7 cut(s) 114, 179, 278, 418, 612, 884, 1016
HpaI GTTAAC 1 cut(s) 73
HpaII CCGG 4 cut(s) 151, 163, 197, 221
HphI GGTGA 2 cut(s) 331, 1025
Hpy166II GTNNAC 6 cut(s) 73, 133, 539, 770, 1233, 1261
Hpy188I TCNGA 8 cut(s) 178, 241, 343, 373, 611, 655, 1168, 1204
Hpy188III TCNNGA 3 cut(s) 118, 168, 286
Hpy8I GTNNAC 6 cut(s) 73, 133, 539, 770, 1233, 1261
HpyAV CCTTC 3 cut(s) 136, 246, 1307
HpyCH4IV ACGT 2 cut(s) 698, 1068
HpyF10VI GCNNNNNNNGC 2 cut(s) 787, 1373
HpyF3I CTNAG 5 cut(s) 405, 736, 821, 826, 1203
HpySE526I ACGT 2 cut(s) 698, 1068
KpnI GGTACC 1 cut(s) 469
KspAI GTTAAC 1 cut(s) 73
Kzo9I GATC 4 cut(s) 378, 561, 650, 1391
LguI GCTCTTC 1 cut(s) 1437
LmnI GCTCC 5 cut(s) 20, 313, 712, 909, 1090
Lsp1109I GCAGC 2 cut(s) 216, 1385
LweI GCATC 3 cut(s) 72, 238, 864
MaeI CTAG 4 cut(s) 17, 299, 600, 1100
MaeII ACGT 2 cut(s) 698, 1068
MaeIII GTNAC 4 cut(s) 319, 613, 1064, 1069
MalI GATC 4 cut(s) 380, 563, 652, 1393
MboI GATC 4 cut(s) 378, 561, 650, 1391
MboII GAAGA 9 cut(s) 435, 682, 740, 854, 1046, 1342, 1369, 1372, 1424
MfeI CAATTG 1 cut(s) 552
MflI RGATCY 2 cut(s) 561, 650
MhlI GDGCHC 2 cut(s) 798, 1085
MlyI GAGTC 2 cut(s) 272, 621
MmeI TCCRAC 2 cut(s) 290, 1121
Mph1103I ATGCAT 1 cut(s) 857
MseI TTAA 5 cut(s) 72, 158, 1272, 1299, 1422
MslI CAYNNNNRTG 2 cut(s) 917, 1331
MspI CCGG 4 cut(s) 151, 163, 197, 221
MspR9I CCNGG 3 cut(s) 109, 423, 567
MunI CAATTG 1 cut(s) 552
MvaI CCWGG 3 cut(s) 109, 423, 567
MwoI GCNNNNNNNGC 2 cut(s) 787, 1373
NdeII GATC 4 cut(s) 378, 561, 650, 1391
NheI GCTAGC 1 cut(s) 1099
NlaIV GGNNCC 5 cut(s) 22, 467, 563, 796, 1082
NmuCI GTSAC 2 cut(s) 319, 613
NsiI ATGCAT 1 cut(s) 857
NspI RCATGY 1 cut(s) 297
PceI AGGCCT 1 cut(s) 997
PciI ACATGT 1 cut(s) 293
PciSI GCTCTTC 1 cut(s) 1437
PcsI WCGNNNNNNNCGW 2 cut(s) 135, 483
PfeI GAWTC 5 cut(s) 114, 179, 418, 884, 1016
PflMI CCANNNNNTGG 1 cut(s) 1115
PkrI GCNGC 2 cut(s) 231, 1375
PleI GAGTC 2 cut(s) 272, 620
PpsI GAGTC 2 cut(s) 272, 620
Ppu21I YACGTR 1 cut(s) 1069
PscI ACATGT 1 cut(s) 293
Psp6I CCWGG 3 cut(s) 107, 421, 565
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 3 cut(s) 107, 421, 565
PspN4I GGNNCC 5 cut(s) 22, 467, 563, 796, 1082
PspOMI GGGCCC 1 cut(s) 794
PspPI GGNCC 5 cut(s) 165, 302, 767, 794, 795
PstNI CAGNNNCTG 1 cut(s) 1379
PsuI RGATCY 2 cut(s) 561, 650
RsaI GTAC 5 cut(s) 467, 538, 1182, 1234, 1400
RsaNI GTAC 5 cut(s) 466, 537, 1181, 1233, 1399
RseI CAYNNNNRTG 2 cut(s) 917, 1331
SapI GCTCTTC 1 cut(s) 1437
SaqAI TTAA 5 cut(s) 72, 158, 1272, 1299, 1422
SatI GCNGC 2 cut(s) 230, 1374
Sau3AI GATC 4 cut(s) 378, 561, 650, 1391
Sau96I GGNCC 5 cut(s) 165, 302, 767, 794, 795
SchI GAGTC 2 cut(s) 272, 621
ScrFI CCNGG 3 cut(s) 109, 423, 567
SduI GDGCHC 2 cut(s) 798, 1085
SfaNI GCATC 3 cut(s) 72, 238, 864
SgrAI CRCCGGYG 1 cut(s) 150
SinI GGWCC 2 cut(s) 165, 767
SmiMI CAYNNNNRTG 2 cut(s) 917, 1331
SmlI CTYRAG 2 cut(s) 587, 646
SmoI CTYRAG 2 cut(s) 587, 646
SnaBI TACGTA 1 cut(s) 1069
SseBI AGGCCT 1 cut(s) 997
SspMI CTAG 4 cut(s) 17, 299, 600, 1100
StuI AGGCCT 1 cut(s) 997
StyD4I CCNGG 3 cut(s) 107, 421, 565
TaiI ACGT 2 cut(s) 701, 1071
TaqI TCGA 3 cut(s) 543, 639, 858
TatI WGTACW 2 cut(s) 1180, 1232
TfiI GAWTC 5 cut(s) 114, 179, 418, 884, 1016
Tru1I TTAA 5 cut(s) 72, 158, 1272, 1299, 1422
Tru9I TTAA 5 cut(s) 72, 158, 1272, 1299, 1422
TscAI CASTG 2 cut(s) 671, 1390
TseFI GTSAC 2 cut(s) 319, 613
TseI GCWGC 2 cut(s) 229, 1373
Tsp45I GTSAC 2 cut(s) 319, 613
TspDTI ATGAA 5 cut(s) 448, 514, 531, 732, 1343
TspGWI ACGGA 2 cut(s) 172, 1187
TspRI CASTG 2 cut(s) 671, 1390
Van91I CCANNNNNTGG 1 cut(s) 1115
VpaK11BI GGWCC 2 cut(s) 165, 767
XapI RAATTY 3 cut(s) 944, 1037, 1144
XceI RCATGY 1 cut(s) 297
XspI CTAG 4 cut(s) 17, 299, 600, 1100
Zsp2I ATGCAT 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.