RchiOBHm_Chr1g0334151

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003282
Physical Location & Seq
Forward (+)
26300748 .. 26302047
1300 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56291

Sequence Viewer

Length: 600 bp
ATGGCCAATCAGATATTGGATCGGAGTTGGCTTGAAAATAGGGCGGGGGTCGATAAGCCATGTAGTTGTGGCTGGATTGATGGCAACGAAAGTTTGTTTGGCATTCAACCGTCATCTAGGGTCATACCCTTCAATGGCTATGATAGAGGTCGGAGAGCCGGCTTAGGGCTGGTTTGGCCTCAGATTAGAGGTTCTCGTGTAAGGAGGATCAGAGCGATCTTCCTCTTTTCTGGAATAGCCGGGATTGATAGCAATGGACCACTGGTTTTGCCTGTGATGCCCGCAGAAATACTATGCTCCAAGACGGCTTCATCGGTGAATATATTGGTCTTGGTCGTGGTTTGCATAAGCTTTGGTCGTAGTGAAGGTGGCGTGGCCATTGGCGACAATTTTGACGATGATAGAGGCAGCGCAGATGTCGGCAGTGGCGAGTCATTGGCGGTGGCAGAGGTGGTGCTCCTAGGGCTTGCTCTAGGAGCTTTTGTTGTGTCTGGGTTCAGTTGGGCTTGGGCCGGGTCTTCTAGGGTTTCTCATTTTTGGGCCTTGGCAGTGTGGGCCTGGTCTGACTGGGTTCATAGAACTATTACTTTTTATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

21.49

Weight (kDa)

6.72

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 44, 282, 440
AclWI GGATC 2 cut(s) 27, 215
AcoI YGGCCR 2 cut(s) 3, 375
AfiI CCNNNNNNNGG 2 cut(s) 134, 165
AgsI TTSAA 3 cut(s) 35, 107, 133
AjnI CCWGG 1 cut(s) 557
AjuI GAANNNNNNNTTGG 2 cut(s) 81, 113
AluBI AGCT 2 cut(s) 351, 479
AluI AGCT 2 cut(s) 351, 479
Alw21I GWGCWC 1 cut(s) 459
AlwI GGATC 2 cut(s) 27, 215
AoxI GGCC 6 cut(s) 3, 176, 375, 510, 540, 555
ApeKI GCWGC 1 cut(s) 408
AspA2I CCTAGG 1 cut(s) 460
AspLEI GCGC 1 cut(s) 413
AspS9I GGNCC 4 cut(s) 257, 510, 540, 555
AsuC2I CCSGG 2 cut(s) 241, 514
AsuHPI GGTGA 1 cut(s) 328
AvaII GGWCC 1 cut(s) 257
AvrII CCTAGG 1 cut(s) 460
BalI TGGCCA 2 cut(s) 5, 377
BauI CACGAG 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 510
Bbv12I GWGCWC 1 cut(s) 459
BbvI GCAGC 1 cut(s) 420
BccI CCATC 1 cut(s) 74
BceAI ACGGC 1 cut(s) 321
BciT130I CCWGG 1 cut(s) 559
BcnI CCSGG 2 cut(s) 241, 514
BfaI CTAG 4 cut(s) 117, 461, 473, 522
BisI GCNGC 1 cut(s) 409
BlnI CCTAGG 1 cut(s) 460
BlsI GCNGC 1 cut(s) 410
Bme1390I CCNGG 3 cut(s) 241, 514, 559
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 4 cut(s) 257, 510, 540, 555
BmrFI CCNGG 3 cut(s) 241, 514, 559
BmrI ACTGGG 1 cut(s) 577
BmsI GCATC 1 cut(s) 267
BmuI ACTGGG 1 cut(s) 577
BpiI GAAGAC 1 cut(s) 510
Bpu10I CCTNAGC 1 cut(s) 163
BpuMI CCSGG 2 cut(s) 241, 514
BsaJI CCNNGG 2 cut(s) 460, 543
BsaXI ACNNNNNCTCC 2 cut(s) 468, 498
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 165
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 267, 572
Bse3DI GCAATG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 559
BseDI CCNNGG 2 cut(s) 460, 543
BseLI CCNNNNNNNGG 2 cut(s) 134, 165
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 194
BseNI ACTGG 2 cut(s) 267, 572
BseXI GCAGC 1 cut(s) 420
BshFI GGCC 6 cut(s) 5, 178, 377, 512, 542, 557
BsiHKAI GWGCWC 1 cut(s) 459
BsiSI CCGG 3 cut(s) 159, 240, 513
BslI CCNNNNNNNGG 2 cut(s) 134, 165
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 6 cut(s) 5, 178, 377, 512, 542, 557
Bsp1286I GDGCHC 1 cut(s) 459
Bsp143I GATC 3 cut(s) 19, 207, 216
BspACI CCGC 3 cut(s) 44, 282, 440
BspANI GGCC 6 cut(s) 5, 178, 377, 512, 542, 557
BspCNI CTCAG 1 cut(s) 193
BspPI GGATC 2 cut(s) 27, 215
BsrDI GCAATG 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 2 cut(s) 267, 572
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 460, 543
BssMI GATC 3 cut(s) 19, 207, 216
BssSI CACGAG 1 cut(s) 195
BssT1I CCWWGG 2 cut(s) 460, 543
Bst2BI CACGAG 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 559
Bst4CI ACNGT 1 cut(s) 111
BstC8I GCNNGC 3 cut(s) 160, 282, 468
BstDEI CTNAG 2 cut(s) 163, 180
BstHHI GCGC 1 cut(s) 413
BstKTI GATC 3 cut(s) 22, 210, 219
BstMBI GATC 3 cut(s) 19, 207, 216
BstMWI GCNNNNNNNGC 5 cut(s) 175, 277, 463, 476, 554
BstNI CCWGG 1 cut(s) 559
BstSCI CCNGG 3 cut(s) 239, 512, 557
BstV1I GCAGC 1 cut(s) 420
BstV2I GAAGAC 1 cut(s) 510
BsuRI GGCC 6 cut(s) 5, 178, 377, 512, 542, 557
BtsI GCAGTG 2 cut(s) 430, 555
BtsIMutI CAGTG 3 cut(s) 260, 430, 555
Cac8I GCNNGC 3 cut(s) 160, 282, 468
CfoI GCGC 1 cut(s) 413
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 4 cut(s) 257, 510, 540, 555
CspCI CAANNNNNGTGG 2 cut(s) 249, 284
CviAII CATG 1 cut(s) 60
DdeI CTNAG 2 cut(s) 163, 180
DpnI GATC 3 cut(s) 21, 209, 218
DpnII GATC 3 cut(s) 19, 207, 216
EaeI YGGCCR 2 cut(s) 3, 375
Eco130I CCWWGG 2 cut(s) 460, 543
Eco47I GGWCC 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 557
EcoT14I CCWWGG 2 cut(s) 460, 543
ErhI CCWWGG 2 cut(s) 460, 543
FaeI CATG 1 cut(s) 63
FaiI YATR 7 cut(s) 61, 125, 141, 295, 323, 347, 576
FatI CATG 1 cut(s) 59
FauI CCCGC 2 cut(s) 37, 289
Fnu4HI GCNGC 1 cut(s) 409
Fsp4HI GCNGC 1 cut(s) 409
FspBI CTAG 4 cut(s) 117, 461, 473, 522
GlaI GCGC 1 cut(s) 412
GluI GCNGC 1 cut(s) 409
HaeIII GGCC 6 cut(s) 5, 178, 377, 512, 542, 557
HapII CCGG 3 cut(s) 159, 240, 513
HhaI GCGC 1 cut(s) 413
Hin1II CATG 1 cut(s) 63
Hin6I GCGC 1 cut(s) 411
HinP1I GCGC 1 cut(s) 411
HindIII AAGCTT 1 cut(s) 349
HinfI GANTC 1 cut(s) 431
HpaII CCGG 3 cut(s) 159, 240, 513
HphI GGTGA 1 cut(s) 328
Hpy188I TCNGA 6 cut(s) 12, 24, 153, 183, 212, 565
Hpy188III TCNNGA 1 cut(s) 231
HpyAV CCTTC 2 cut(s) 139, 359
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 345
HpyF10VI GCNNNNNNNGC 5 cut(s) 175, 277, 463, 476, 554
HpyF3I CTNAG 2 cut(s) 163, 180
Hsp92II CATG 1 cut(s) 63
HspAI GCGC 1 cut(s) 411
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
Kzo9I GATC 3 cut(s) 19, 207, 216
LmnI GCTCC 3 cut(s) 302, 462, 476
Lsp1109I GCAGC 1 cut(s) 420
LweI GCATC 1 cut(s) 267
MaeI CTAG 4 cut(s) 117, 461, 473, 522
MalI GATC 3 cut(s) 21, 209, 218
MboI GATC 3 cut(s) 19, 207, 216
MboII GAAGA 2 cut(s) 211, 510
MhlI GDGCHC 1 cut(s) 459
MlsI TGGCCA 2 cut(s) 5, 377
MluCI AATT 1 cut(s) 388
MluNI TGGCCA 2 cut(s) 5, 377
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 7 cut(s) 140, 182, 189, 198, 233, 398, 442
Mox20I TGGCCA 2 cut(s) 5, 377
MroNI GCCGGC 1 cut(s) 158
MscI TGGCCA 2 cut(s) 5, 377
Msp20I TGGCCA 2 cut(s) 5, 377
MspI CCGG 3 cut(s) 159, 240, 513
MspR9I CCNGG 3 cut(s) 241, 514, 559
Mva1269I GAATGC 1 cut(s) 102
MvaI CCWGG 1 cut(s) 559
MwoI GCNNNNNNNGC 5 cut(s) 175, 277, 463, 476, 554
NaeI GCCGGC 1 cut(s) 160
NciI CCSGG 2 cut(s) 241, 514
NdeII GATC 3 cut(s) 19, 207, 216
NgoMIV GCCGGC 1 cut(s) 158
NlaIII CATG 1 cut(s) 63
PcsI WCGNNNNNNNCGW 1 cut(s) 426
PctI GAATGC 1 cut(s) 102
PdiI GCCGGC 1 cut(s) 160
PkrI GCNGC 1 cut(s) 410
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
Psp6I CCWGG 1 cut(s) 557
PspGI CCWGG 1 cut(s) 557
PspPI GGNCC 4 cut(s) 257, 510, 540, 555
SatI GCNGC 1 cut(s) 409
Sau3AI GATC 3 cut(s) 19, 207, 216
Sau96I GGNCC 4 cut(s) 257, 510, 540, 555
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 3 cut(s) 241, 514, 559
SduI GDGCHC 1 cut(s) 459
SetI ASST 6 cut(s) 151, 193, 353, 370, 453, 481
SfaNI GCATC 1 cut(s) 267
SinI GGWCC 1 cut(s) 257
Sse9I AATT 1 cut(s) 388
SsiI CCGC 3 cut(s) 44, 282, 440
SspMI CTAG 4 cut(s) 117, 461, 473, 522
StyD4I CCNGG 3 cut(s) 239, 512, 557
StyI CCWWGG 2 cut(s) 460, 543
TaaI ACNGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 51
TasI AATT 1 cut(s) 388
TscAI CASTG 3 cut(s) 267, 430, 555
TseI GCWGC 1 cut(s) 408
TspDTI ATGAA 2 cut(s) 300, 563
TspRI CASTG 3 cut(s) 267, 430, 555
VpaK11BI GGWCC 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
XmaJI CCTAGG 1 cut(s) 460
XspI CTAG 4 cut(s) 117, 461, 473, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.