Rh5AG348100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003282
Physical Location & Seq
Forward (+)
57461851 .. 57463721
1871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG348100.1

Sequence Viewer

Length: 678 bp
ATGGAGATGAGATCCTCTGTCAATCGACCACACAGAGGACGTCTGAAGAATCGGGATGATAGGCATGCAAAGCTAAATGGGATCTACTGTGACAGGTTGTGGGATGCGGTAGAGGATTGCTTCCGCCCCCAAAACAAGGTGGTGGCGATCTGGTATTCAAGCAATTCAACAATTCGGCTTCAAATTGTAGGAGCTGTGAAATCGAACATTGGTCTTGCCATAGAGTTGAGTCTCGATGCAGCGAGAAGACCATGGCTGGTTGTGGTGATGTTGGGTGATGGTACTGATGCTGATCGAAAGGTGGTAGCAAGGTTGGATGATGTGGTGCCCAAGATGCACTGGGGGGCGGCGATGTTGACTGCGGGTGCAGAAGAGGCGGTGGCTATGAACATCAAATCCTCCATTCTGTCCAAATCTGATTTCTTGTTGGGTTGTCGGTCTTCGACTAAAGTTGGGGTTGGCGATGAAGAGGTGGCTATGGCTCCTCATGGTTGGGCATGGTGGTCTAGCCATATTTGTTGTATTCATGGAGTCTGTCTCCCATTGCGGTGGGGATGGTGCAAGTTTACAGTTCTACGTGTCTTCCTCTCAAAATTGCCAATTGGATTGATAGATCTGGTGATGGCCTCGATGCTGGTGGCATCGGTTCCAGAGACAGCTGCTACAGAAAAATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

24.9

Weight (kDa)

8.81

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 325
AciI CCGC 6 cut(s) 107, 124, 347, 362, 377, 547
AclWI GGATC 2 cut(s) 6, 89
AcuI CTGAAG 1 cut(s) 65
AcyI GRCGYC 1 cut(s) 40
AfaI GTAC 1 cut(s) 283
AfiI CCNNNNNNNGG 2 cut(s) 35, 136
AflIII ACRYGT 1 cut(s) 577
AgsI TTSAA 3 cut(s) 159, 168, 182
AjuI GAANNNNNNNTTGG 2 cut(s) 404, 436
AloI GAACNNNNNNTCC 2 cut(s) 380, 412
AluBI AGCT 3 cut(s) 73, 194, 659
AluI AGCT 3 cut(s) 73, 194, 659
Alw26I GTCTC 3 cut(s) 236, 542, 647
AlwI GGATC 2 cut(s) 6, 89
AoxI GGCC 1 cut(s) 624
ApeKI GCWGC 2 cut(s) 239, 659
AsuHPI GGTGA 3 cut(s) 277, 287, 631
BaeGI GKGCMC 1 cut(s) 330
BanI GGYRCC 1 cut(s) 325
BbsI GAAGAC 3 cut(s) 253, 432, 574
BbvI GCAGC 2 cut(s) 251, 646
BccI CCATC 3 cut(s) 272, 549, 616
BcoDI GTCTC 3 cut(s) 236, 542, 647
BfaI CTAG 1 cut(s) 507
BfmI CTRYAG 1 cut(s) 663
BglII AGATCT 1 cut(s) 613
BisI GCNGC 3 cut(s) 240, 348, 660
BlsI GCNGC 3 cut(s) 241, 349, 661
BmiI GGNNCC 3 cut(s) 327, 483, 648
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 6 cut(s) 94, 226, 277, 324, 621, 650
BmuI ACTGGG 1 cut(s) 349
BpiI GAAGAC 3 cut(s) 253, 432, 574
BplI GAGNNNNNCTC 2 cut(s) 522, 554
BsaAI YACGTR 1 cut(s) 578
BsaBI GATNNNNATC 1 cut(s) 291
BsaHI GRCGYC 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 251
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 136
Bse1I ACTGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 542
Bse8I GATNNNNATC 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 4 cut(s) 61, 109, 322, 560
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 2 cut(s) 35, 136
BseMI GCAATG 1 cut(s) 542
BseNI ACTGG 1 cut(s) 344
BseRI GAGGAG 1 cut(s) 474
BseSI GKGCMC 1 cut(s) 330
BseXI GCAGC 2 cut(s) 251, 646
BsgI GTGCAG 1 cut(s) 387
BshFI GGCC 1 cut(s) 626
BshNI GGYRCC 1 cut(s) 325
BslI CCNNNNNNNGG 2 cut(s) 35, 136
BsmAI GTCTC 3 cut(s) 236, 542, 647
BsnI GGCC 1 cut(s) 626
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 5 cut(s) 11, 81, 147, 292, 613
Bsp19I CCATGG 1 cut(s) 251
BspACI CCGC 6 cut(s) 107, 124, 347, 362, 377, 547
BspANI GGCC 1 cut(s) 626
BspLI GGNNCC 3 cut(s) 327, 483, 648
BspPI GGATC 2 cut(s) 6, 89
BspT107I GGYRCC 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 542
BsrI ACTGG 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 5 cut(s) 11, 81, 147, 292, 613
BssNI GRCGYC 1 cut(s) 40
BssT1I CCWWGG 1 cut(s) 251
Bst4CI ACNGT 2 cut(s) 89, 571
Bst6I CTCTTC 2 cut(s) 366, 462
BstACI GRCGYC 1 cut(s) 40
BstBAI YACGTR 1 cut(s) 578
BstC8I GCNNGC 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 251
BstF5I GGATG 4 cut(s) 61, 109, 322, 560
BstKTI GATC 5 cut(s) 14, 84, 150, 295, 616
BstMAI GTCTC 3 cut(s) 236, 542, 647
BstMBI GATC 5 cut(s) 11, 81, 147, 292, 613
BstMWI GCNNNNNNNGC 3 cut(s) 70, 334, 374
BstNSI RCATGY 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 663
BstSLI GKGCMC 1 cut(s) 330
BstV1I GCAGC 2 cut(s) 251, 646
BstV2I GAAGAC 3 cut(s) 253, 432, 574
BstX2I RGATCY 3 cut(s) 11, 81, 613
BstXI CCANNNNNNTGG 1 cut(s) 549
BstYI RGATCY 3 cut(s) 11, 81, 613
BsuRI GGCC 1 cut(s) 626
BtgI CCRYGG 1 cut(s) 251
BtgZI GCGATG 2 cut(s) 365, 477
BtsCI GGATG 4 cut(s) 61, 109, 322, 560
BtsIMutI CAGTG 1 cut(s) 337
Cac8I GCNNGC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 282
CviAII CATG 5 cut(s) 65, 252, 488, 498, 527
CviQI GTAC 1 cut(s) 282
DpnI GATC 5 cut(s) 13, 83, 149, 294, 615
DpnII GATC 5 cut(s) 11, 81, 147, 292, 613
Eam1104I CTCTTC 2 cut(s) 366, 462
EarI CTCTTC 2 cut(s) 366, 462
EciI GGCGGA 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 5 cut(s) 68, 255, 491, 501, 530
FaiI YATR 9 cut(s) 66, 221, 253, 386, 479, 489, 499, 513, 528
FatI CATG 5 cut(s) 64, 251, 487, 497, 526
FauI CCCGC 1 cut(s) 355
Fnu4HI GCNGC 3 cut(s) 240, 348, 660
FokI GGATG 4 cut(s) 68, 116, 329, 567
Fsp4HI GCNGC 3 cut(s) 240, 348, 660
FspBI CTAG 1 cut(s) 507
GluI GCNGC 3 cut(s) 240, 348, 660
HaeIII GGCC 1 cut(s) 626
Hin1I GRCGYC 1 cut(s) 40
Hin1II CATG 5 cut(s) 68, 255, 491, 501, 530
HincII GTYRAC 1 cut(s) 357
HindII GTYRAC 1 cut(s) 357
HinfI GANTC 3 cut(s) 49, 229, 531
HphI GGTGA 3 cut(s) 277, 287, 631
Hpy166II GTNNAC 2 cut(s) 357, 567
Hpy188I TCNGA 2 cut(s) 45, 418
Hpy188III TCNNGA 3 cut(s) 53, 233, 650
Hpy8I GTNNAC 2 cut(s) 357, 567
HpyCH4III ACNGT 2 cut(s) 89, 571
HpyCH4IV ACGT 2 cut(s) 40, 577
HpyCH4V TGCA 5 cut(s) 68, 239, 337, 368, 561
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 334, 374
HpySE526I ACGT 2 cut(s) 40, 577
Hsp92I GRCGYC 1 cut(s) 40
Hsp92II CATG 5 cut(s) 68, 255, 491, 501, 530
Kzo9I GATC 5 cut(s) 11, 81, 147, 292, 613
LmnI GCTCC 2 cut(s) 191, 487
LpnPI CCDG 7 cut(s) 79, 136, 242, 325, 602, 620, 663
Lsp1109I GCAGC 2 cut(s) 251, 646
LweI GCATC 6 cut(s) 94, 226, 277, 324, 621, 650
MaeI CTAG 1 cut(s) 507
MaeII ACGT 2 cut(s) 40, 577
MaeIII GTNAC 1 cut(s) 89
MalI GATC 5 cut(s) 13, 83, 149, 294, 615
MboI GATC 5 cut(s) 11, 81, 147, 292, 613
MboII GAAGA 6 cut(s) 58, 258, 383, 432, 479, 574
MfeI CAATTG 1 cut(s) 600
MflI RGATCY 3 cut(s) 11, 81, 613
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 5 cut(s) 163, 171, 183, 593, 600
MlyI GAGTC 2 cut(s) 238, 540
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 9 cut(s) 25, 29, 106, 367, 409, 463, 495, 596, 637
MslI CAYNNNNRTG 1 cut(s) 547
MspA1I CMGCKG 1 cut(s) 659
MunI CAATTG 1 cut(s) 600
MwoI GCNNNNNNNGC 3 cut(s) 70, 334, 374
NcoI CCATGG 1 cut(s) 251
NdeII GATC 5 cut(s) 11, 81, 147, 292, 613
NlaIII CATG 5 cut(s) 68, 255, 491, 501, 530
NlaIV GGNNCC 3 cut(s) 327, 483, 648
NmuCI GTSAC 1 cut(s) 89
NspI RCATGY 1 cut(s) 68
PaeI GCATGC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 3 cut(s) 241, 349, 661
PleI GAGTC 2 cut(s) 237, 539
PpsI GAGTC 2 cut(s) 237, 539
Ppu21I YACGTR 1 cut(s) 578
PspN4I GGNNCC 3 cut(s) 327, 483, 648
PsuI RGATCY 3 cut(s) 11, 81, 613
PvuII CAGCTG 1 cut(s) 659
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
RseI CAYNNNNRTG 1 cut(s) 547
SatI GCNGC 3 cut(s) 240, 348, 660
Sau3AI GATC 5 cut(s) 11, 81, 147, 292, 613
SchI GAGTC 2 cut(s) 238, 540
SduI GDGCHC 1 cut(s) 330
SfaNI GCATC 6 cut(s) 94, 226, 277, 324, 621, 650
SfcI CTRYAG 1 cut(s) 663
SmiMI CAYNNNNRTG 1 cut(s) 547
SphI GCATGC 1 cut(s) 68
Sse9I AATT 5 cut(s) 163, 171, 183, 593, 600
SsiI CCGC 6 cut(s) 107, 124, 347, 362, 377, 547
SspMI CTAG 1 cut(s) 507
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 2 cut(s) 89, 571
TaiI ACGT 2 cut(s) 43, 580
TaqI TCGA 6 cut(s) 25, 203, 234, 295, 443, 629
TaqII GACCGA 1 cut(s) 426
TasI AATT 5 cut(s) 163, 171, 183, 593, 600
TauI GCSGC 1 cut(s) 350
TfiI GAWTC 1 cut(s) 49
TscAI CASTG 1 cut(s) 344
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 2 cut(s) 239, 659
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 3 cut(s) 401, 480, 515
TspRI CASTG 1 cut(s) 344
XceI RCATGY 1 cut(s) 68
XspI CTAG 1 cut(s) 507
ZraI GACGTC 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.