Rh7AG242500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0003282
Physical Location & Seq
Forward (+)
23822608 .. 23823069
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG242500.1

Sequence Viewer

Length: 462 bp
ATGGGTGGTACAGCTTTCCATTACATGCTTGCGGTGATGGGCTGCCCTGCTGATCGGGGTCGGATCCGACCACGCAGAGGACGGTTGAAAGAGCCTGACAACGGGCATGCAGGGTTGAAGGAGATTGGCTTTTGTTGGTTGGTGGATGAGACAAAGGATCGGTTCAGTTCCAGGAACAAGGTGGCGGCGATTTGGCTTTCAGACGCAGTGACGGGCCGACTCCAACTTGCAAGAGCGATGCAATTCGCCTTCCGTACTAGAGCATTCGGATTCCTGCAGCCCCGATTTGCCGGCGCGGCGTGGCACACAGGTGACGGTGGCGACACCAAACTGGGTTGGGTGCCTAGCTTGGGTGGGACGCCGAGGCCCATGTTGAGTTGGGGGTCTGATTCTGTTTGGGCCAAAGCAGTCCAAAATTGGTTTTGGGCTCAAGTCTGGACCAGGAAATGGTTAAGGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.32

Weight (kDa)

10.87

Isoelectric Point (pI)

30.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 340
AccB7I CCANNNNNTGG 1 cut(s) 447
AccII CGCG 1 cut(s) 296
AciI CCGC 3 cut(s) 32, 185, 296
AclWI GGATC 3 cut(s) 58, 71, 165
AcyI GRCGYC 1 cut(s) 359
AfaI GTAC 2 cut(s) 10, 256
AfiI CCNNNNNNNGG 4 cut(s) 77, 101, 350, 447
AgsI TTSAA 2 cut(s) 88, 118
AjnI CCWGG 2 cut(s) 170, 440
AleI CACNNNNGTG 1 cut(s) 309
AluBI AGCT 2 cut(s) 14, 348
AluI AGCT 2 cut(s) 14, 348
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 3 cut(s) 58, 71, 165
AoxI GGCC 3 cut(s) 214, 365, 399
ApeKI GCWGC 2 cut(s) 42, 277
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 4 cut(s) 214, 366, 399, 438
AsuHPI GGTGA 2 cut(s) 46, 323
AvaII GGWCC 1 cut(s) 438
BamHI GGATCC 1 cut(s) 63
BanI GGYRCC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 430
BbvI GCAGC 2 cut(s) 29, 289
BccI CCATC 1 cut(s) 31
BciT130I CCWGG 2 cut(s) 172, 442
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 2 cut(s) 258, 345
BfmI CTRYAG 1 cut(s) 275
BglI GCCNNNNNGGC 1 cut(s) 296
BisI GCNGC 4 cut(s) 43, 186, 278, 297
BlsI GCNGC 4 cut(s) 44, 187, 279, 298
Bme1390I CCNGG 2 cut(s) 172, 442
Bme18I GGWCC 1 cut(s) 438
BmgT120I GGNCC 4 cut(s) 214, 366, 399, 438
BmiI GGNNCC 2 cut(s) 65, 342
BmrFI CCNGG 2 cut(s) 172, 442
BmrI ACTGGG 1 cut(s) 341
BmsI GCATC 1 cut(s) 228
BmuI ACTGGG 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 362
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 101, 350, 447
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 336
BseBI CCWGG 2 cut(s) 172, 442
BseDI CCNNGG 1 cut(s) 362
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 4 cut(s) 77, 101, 350, 447
BseNI ACTGG 1 cut(s) 336
BseXI GCAGC 2 cut(s) 29, 289
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 3 cut(s) 216, 367, 401
BshNI GGYRCC 1 cut(s) 340
BsiSI CCGG 1 cut(s) 291
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 4 cut(s) 77, 101, 350, 447
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 370
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 3 cut(s) 216, 367, 401
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 3 cut(s) 52, 63, 157
BspACI CCGC 3 cut(s) 32, 185, 296
BspANI GGCC 3 cut(s) 216, 367, 401
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 2 cut(s) 65, 342
BspMAI CTGCAG 1 cut(s) 279
BspPI GGATC 3 cut(s) 58, 71, 165
BspT107I GGYRCC 1 cut(s) 340
BsrFI RCCGGY 1 cut(s) 290
BsrI ACTGG 1 cut(s) 336
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 362
BssMI GATC 3 cut(s) 52, 63, 157
BssNI GRCGYC 1 cut(s) 359
Bst2UI CCWGG 2 cut(s) 172, 442
Bst4CI ACNGT 2 cut(s) 84, 317
BstACI GRCGYC 1 cut(s) 359
BstC8I GCNNGC 3 cut(s) 30, 108, 292
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 1 cut(s) 296
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 3 cut(s) 55, 66, 160
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 3 cut(s) 52, 63, 157
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 2 cut(s) 172, 442
BstNSI RCATGY 2 cut(s) 28, 110
BstSCI CCNGG 2 cut(s) 170, 440
BstSFI CTRYAG 1 cut(s) 275
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 2 cut(s) 29, 289
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BsuRI GGCC 3 cut(s) 216, 367, 401
BtgZI GCGATG 1 cut(s) 251
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 3 cut(s) 30, 108, 292
CfoI GCGC 1 cut(s) 296
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 4 cut(s) 214, 366, 399, 438
CseI GACGC 2 cut(s) 212, 367
Csp6I GTAC 2 cut(s) 9, 255
CviAII CATG 3 cut(s) 25, 107, 370
CviQI GTAC 2 cut(s) 9, 255
DpnI GATC 3 cut(s) 54, 65, 159
DpnII GATC 3 cut(s) 52, 63, 157
Eco24I GRGCYC 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 438
EcoRII CCWGG 2 cut(s) 170, 440
EcoT38I GRGCYC 1 cut(s) 430
FaeI CATG 3 cut(s) 28, 110, 373
FaiI YATR 3 cut(s) 26, 108, 371
FaqI GGGAC 1 cut(s) 370
FatI CATG 3 cut(s) 24, 106, 369
Fnu4HI GCNGC 4 cut(s) 43, 186, 278, 297
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 430
Fsp4HI GCNGC 4 cut(s) 43, 186, 278, 297
FspBI CTAG 2 cut(s) 258, 345
GlaI GCGC 1 cut(s) 295
GluI GCNGC 4 cut(s) 43, 186, 278, 297
HaeIII GGCC 3 cut(s) 216, 367, 401
HapII CCGG 1 cut(s) 291
HgaI GACGC 2 cut(s) 212, 367
HhaI GCGC 1 cut(s) 296
Hin1I GRCGYC 1 cut(s) 359
Hin1II CATG 3 cut(s) 28, 110, 373
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HinfI GANTC 3 cut(s) 219, 270, 389
HpaII CCGG 1 cut(s) 291
HphI GGTGA 2 cut(s) 46, 323
Hpy188I TCNGA 5 cut(s) 63, 68, 202, 269, 388
Hpy188III TCNNGA 1 cut(s) 436
HpyAV CCTTC 2 cut(s) 112, 259
HpyCH4III ACNGT 2 cut(s) 84, 317
HpyCH4V TGCA 4 cut(s) 110, 230, 241, 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
Hsp92I GRCGYC 1 cut(s) 359
Hsp92II CATG 3 cut(s) 28, 110, 373
HspAI GCGC 1 cut(s) 294
KroI GCCGGC 1 cut(s) 290
KroNI GCCGGC 1 cut(s) 292
Kzo9I GATC 3 cut(s) 52, 63, 157
Lsp1109I GCAGC 2 cut(s) 29, 289
LweI GCATC 1 cut(s) 228
MaeI CTAG 2 cut(s) 258, 345
MaeIII GTNAC 2 cut(s) 208, 311
MalI GATC 3 cut(s) 54, 65, 159
MboI GATC 3 cut(s) 52, 63, 157
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 2 cut(s) 242, 415
MlyI GAGTC 1 cut(s) 213
MmeI TCCRAC 3 cut(s) 41, 91, 247
MnlI CCTC 2 cut(s) 71, 357
MroNI GCCGGC 1 cut(s) 290
MseI TTAA 1 cut(s) 452
MslI CAYNNNNRTG 1 cut(s) 309
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 2 cut(s) 172, 442
Mva1269I GAATGC 1 cut(s) 263
MvaI CCWGG 2 cut(s) 172, 442
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 296
NaeI GCCGGC 1 cut(s) 292
NdeII GATC 3 cut(s) 52, 63, 157
NgoMIV GCCGGC 1 cut(s) 290
NlaIII CATG 3 cut(s) 28, 110, 373
NlaIV GGNNCC 2 cut(s) 65, 342
NmeAIII GCCGAG 1 cut(s) 387
NmuCI GTSAC 2 cut(s) 208, 311
NspI RCATGY 2 cut(s) 28, 110
OliI CACNNNNGTG 1 cut(s) 309
PaeI GCATGC 1 cut(s) 110
PctI GAATGC 1 cut(s) 263
PdiI GCCGGC 1 cut(s) 292
PfeI GAWTC 2 cut(s) 270, 389
PflMI CCANNNNNTGG 1 cut(s) 447
PfoI TCCNGGA 1 cut(s) 170
PkrI GCNGC 4 cut(s) 44, 187, 279, 298
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
Psp6I CCWGG 2 cut(s) 170, 440
PspGI CCWGG 2 cut(s) 170, 440
PspN4I GGNNCC 2 cut(s) 65, 342
PspPI GGNCC 4 cut(s) 214, 366, 399, 438
PstI CTGCAG 1 cut(s) 279
PsuI RGATCY 1 cut(s) 63
RsaI GTAC 2 cut(s) 10, 256
RsaNI GTAC 2 cut(s) 9, 255
RseI CAYNNNNRTG 1 cut(s) 309
SaqAI TTAA 1 cut(s) 452
SatI GCNGC 4 cut(s) 43, 186, 278, 297
Sau3AI GATC 3 cut(s) 52, 63, 157
Sau96I GGNCC 4 cut(s) 214, 366, 399, 438
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 2 cut(s) 172, 442
SduI GDGCHC 1 cut(s) 430
SetI ASST 5 cut(s) 16, 183, 313, 350, 458
SfaNI GCATC 1 cut(s) 228
SfcI CTRYAG 1 cut(s) 275
SinI GGWCC 1 cut(s) 438
SmiMI CAYNNNNRTG 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
SphI GCATGC 1 cut(s) 110
Sse9I AATT 2 cut(s) 242, 415
SsiI CCGC 3 cut(s) 32, 185, 296
SspMI CTAG 2 cut(s) 258, 345
StyD4I CCNGG 2 cut(s) 170, 440
TaaI ACNGT 2 cut(s) 84, 317
TasI AATT 2 cut(s) 242, 415
TauI GCSGC 2 cut(s) 188, 299
TfiI GAWTC 2 cut(s) 270, 389
Tru1I TTAA 1 cut(s) 452
Tru9I TTAA 1 cut(s) 452
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 2 cut(s) 208, 311
TseI GCWGC 2 cut(s) 42, 277
Tsp45I GTSAC 2 cut(s) 208, 311
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 1 cut(s) 213
Van91I CCANNNNNTGG 1 cut(s) 447
VpaK11BI GGWCC 1 cut(s) 438
XceI RCATGY 2 cut(s) 28, 110
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XspI CTAG 2 cut(s) 258, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.