Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003282

Physical Location & Seq

Genomic Coordinates Reverse (-)

39247608 .. 39248168

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029476

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCCAATCAGATCTTGGATCGGAGTTGGCTTGAAACTAGGGCGGGGGTCGATACGCCATGTAGTTGTGGCTGGATTGATGGTAACGAAAGTTTCTTTGGCATTCAGCTATCATCTGGGGTCATACGCTTCAATGGCTGTGATAGAGCCAGGGTTGATAGCAGTGGGCCACTGGTTCCGCCTATGATGCCAGCGGAAAGGCTATGCTCAAGGATAGCTTCGTCAGTGAATATATTTGTCTTGGTCGTGGTTTGCATCAGTTTTGGTAATGGTGAAGGTGGCGTGGCCACTGGCAACACTTTTGACGATGATAGAGGCAGTGCAGATGTCGGCAGTGGCAAGTCGTTGGCGGTGGCAGAGGTGGTGCTCCTAGGGCTTGCTCTAGGAGCTTTTGTTGAGTCTGGGCTTAGTTGGGCTTGGGTTGGGTCTTCTAGGGTTTCTCTTTTTTGGGCCTCGGCAATGTGGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

16.37

Weight (kDa)

4.54

Isoelectric Point (pI)

24.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003282)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334151 RchiOBHm_Chr6g0275401
rosa_laevigata	RLG00000012330 RLG00000023103 RLG00000023473 RLG00000023476 RLG00000028751 RLG00000029476
rosa_multiflora	Rmu_co8467563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019700 Rroxscaffold_1G00039360 Rroxscaffold_3G00249990 Rroxscaffold_3G00275150 Rroxscaffold_6G00395480 Rroxscaffold_7G00190930
rosa_rugosa	Rorug03G0305200
rosa_samantha	Rh2AG435100 Rh2DG453400 Rh2DG691400 Rh3AG051100 Rh3BG052300 Rh3BG303700 Rh3CG052000 Rh3DG052700 Rh4AG232800 Rh4AG393900 Rh4BG028000 Rh4DG030700 Rh4DG400900 Rh5AG348100 Rh5AG355400 Rh5DG570200 Rh6AG205300 Rh6BG208300 Rh6BG518000 Rh7AG242500 Rh7AG438800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	44, 179, 194, 350
AclWI	GGATC	1 cut(s)	27
AcoI	YGGCCR	2 cut(s)	3, 285
AgsI	TTSAA	2 cut(s)	35, 133
AjnI	CCWGG	1 cut(s)	149
AjuI	GAANNNNNNNTTGG	2 cut(s)	81, 113
AluBI	AGCT	3 cut(s)	109, 218, 389
AluI	AGCT	3 cut(s)	109, 218, 389
Alw21I	GWGCWC	1 cut(s)	369
AlwI	GGATC	1 cut(s)	27
AoxI	GGCC	5 cut(s)	3, 167, 285, 450, 465
AspA2I	CCTAGG	1 cut(s)	370
AspS9I	GGNCC	3 cut(s)	167, 450, 465
AsuHPI	GGTGA	1 cut(s)	284
AvrII	CCTAGG	1 cut(s)	370
BalI	TGGCCA	2 cut(s)	5, 287
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	369
BccI	CCATC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	151
BfaI	CTAG	5 cut(s)	39, 371, 383, 432, 469
BglII	AGATCT	1 cut(s)	12
BlnI	CCTAGG	1 cut(s)	370
Bme1390I	CCNGG	1 cut(s)	151
BmgT120I	GGNCC	3 cut(s)	167, 450, 465
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	2 cut(s)	177, 264
BpiI	GAAGAC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	193
BsaJI	CCNNGG	3 cut(s)	150, 370, 453
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bse1I	ACTGG	2 cut(s)	177, 295
Bse3DI	GCAATG	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	3 cut(s)	150, 370, 453
BseMI	GCAATG	1 cut(s)	465
BseNI	ACTGG	2 cut(s)	177, 295
BsgI	GTGCAG	1 cut(s)	342
BshFI	GGCC	5 cut(s)	5, 169, 287, 452, 467
BsiHKAI	GWGCWC	1 cut(s)	369
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	5 cut(s)	5, 169, 287, 452, 467
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	12, 19
BspACI	CCGC	4 cut(s)	44, 179, 194, 350
BspANI	GGCC	5 cut(s)	5, 169, 287, 452, 467
BspLI	GGNNCC	1 cut(s)	177
BspPI	GGATC	1 cut(s)	27
BsrDI	GCAATG	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	177, 295
BssECI	CCNNGG	3 cut(s)	150, 370, 453
BssMI	GATC	2 cut(s)	12, 19
BssT1I	CCWWGG	1 cut(s)	370
Bst2UI	CCWGG	1 cut(s)	151
BstC8I	GCNNGC	2 cut(s)	192, 378
BstDEI	CTNAG	1 cut(s)	407
BstKTI	GATC	2 cut(s)	15, 22
BstMBI	GATC	2 cut(s)	12, 19
BstMWI	GCNNNNNNNGC	5 cut(s)	135, 187, 373, 386, 464
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	149
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
BsuRI	GGCC	5 cut(s)	5, 169, 287, 452, 467
BtsI	GCAGTG	3 cut(s)	169, 325, 340
BtsIMutI	CAGTG	6 cut(s)	169, 170, 231, 288, 325, 340
Cac8I	GCNNGC	2 cut(s)	192, 378
Cfr13I	GGNCC	3 cut(s)	167, 450, 465
CviAII	CATG	1 cut(s)	60
DdeI	CTNAG	1 cut(s)	407
DpnI	GATC	2 cut(s)	14, 21
DpnII	GATC	2 cut(s)	12, 19
EaeI	YGGCCR	2 cut(s)	3, 285
EciI	GGCGGA	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	1 cut(s)	63
FaiI	YATR	5 cut(s)	61, 125, 185, 205, 233
FalI	AAGNNNNNCTT	2 cut(s)	202, 234
FatI	CATG	1 cut(s)	59
FauI	CCCGC	1 cut(s)	37
FspBI	CTAG	5 cut(s)	39, 371, 383, 432, 469
HaeIII	GGCC	5 cut(s)	5, 169, 287, 452, 467
Hin1II	CATG	1 cut(s)	63
HinfI	GANTC	1 cut(s)	398
HphI	GGTGA	1 cut(s)	284
Hpy188I	TCNGA	2 cut(s)	12, 24
HpyAV	CCTTC	1 cut(s)	269
HpyCH4V	TGCA	2 cut(s)	255, 323
HpyF10VI	GCNNNNNNNGC	5 cut(s)	135, 187, 373, 386, 464
HpyF3I	CTNAG	1 cut(s)	407
Hsp92II	CATG	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	12, 19
LmnI	GCTCC	2 cut(s)	372, 386
LpnPI	CCDG	8 cut(s)	58, 102, 136, 158, 163, 204, 276, 387
LweI	GCATC	2 cut(s)	177, 264
MaeI	CTAG	5 cut(s)	39, 371, 383, 432, 469
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	2 cut(s)	14, 21
MboI	GATC	2 cut(s)	12, 19
MboII	GAAGA	1 cut(s)	420
MflI	RGATCY	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	369
MlsI	TGGCCA	2 cut(s)	5, 287
MluNI	TGGCCA	2 cut(s)	5, 287
MlyI	GAGTC	1 cut(s)	407
MnlI	CCTC	3 cut(s)	308, 352, 463
Mox20I	TGGCCA	2 cut(s)	5, 287
MscI	TGGCCA	2 cut(s)	5, 287
Msp20I	TGGCCA	2 cut(s)	5, 287
MspA1I	CMGCKG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	151
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	5 cut(s)	135, 187, 373, 386, 464
NdeII	GATC	2 cut(s)	12, 19
NlaIII	CATG	1 cut(s)	63
NlaIV	GGNNCC	1 cut(s)	177
NmeAIII	GCCGAG	1 cut(s)	434
PctI	GAATGC	1 cut(s)	102
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	3 cut(s)	167, 450, 465
PsuI	RGATCY	1 cut(s)	12
Sau3AI	GATC	2 cut(s)	12, 19
Sau96I	GGNCC	3 cut(s)	167, 450, 465
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	5 cut(s)	111, 220, 280, 363, 391
SfaNI	GCATC	2 cut(s)	177, 264
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
SsiI	CCGC	4 cut(s)	44, 179, 194, 350
SspMI	CTAG	5 cut(s)	39, 371, 383, 432, 469
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	370
TaqI	TCGA	1 cut(s)	51
TscAI	CASTG	6 cut(s)	169, 177, 231, 295, 325, 340
TspRI	CASTG	6 cut(s)	169, 177, 231, 295, 325, 340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XmaJI	CCTAGG	1 cut(s)	370
XspI	CTAG	5 cut(s)	39, 371, 383, 432, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.