Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003282

Physical Location & Seq

Genomic Coordinates Forward (+)

53653112 .. 53654512

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG232800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAGGGAAGGGGTCGTCTCGACCTGCAGTGGTGGCTGTTTGGGGAGCAAAGCCGACTGGGCTGGCATTCAGCTGTCGTCTGGGGCTTTACCAGTTGATGGATTTGATGGAGATCCAAGGGTTGATTTAGGGCTGGGTTGGCCTGAGATTAGGAGCTATCGGTTTGGGATGATTACTCCCTCGTCCAGCACAGCCAGTTTTGGTAGAAGTGGGATATTGGGTTCGGTGATGCCAGTGGAGCAACGCTGCTGGTGGATGGCTTCGGCGACGCAATCTCTAGCCGGAGTAGTTGGTCGTTCTTGCTTTGGTGGCGGTAAAGGTGGCATGGCTATCAGCGGCATCTCTGACCGCGATAGAGGCAGTGCAGGTGAAGTTGGCGGCCGGTCTTTGGCGGCGACAGGGTTGGTGCTCCTAGGGCGAACTGGATTTCTTGGTGGGGCTGTGTTCAGTTGGGTTTGGGCCTGGTGTGCTAGGGTTCCTCGATTTTGGGCCTTGGTAGTGTGGGCTTGCTGGGCTTGTTTAATTTTAGAAGCGGTGAAAGGTTTAAGCGGATCTTACAGTCCCTTGAGTTTTCAGTTCGCCGGTCTTGTGGATGTGTTTGGATGGTGTGGCTTTGGAAGGAAGGCTTCGATGTCCTTTTCTTGTCTGAACAAGGATGTCGTCCTTCACCGGAACCAAATGAAGGATGGGGATGTGGATATGGTTGAACGGACGGACGGCGCGGCATGGATCAAGGTTGCACTGGTTGGACGGACGGGGCTGGATCAAGGTGCACTGGTTGGACGGACGGCGCTGGATCAAGGTGCACTGGTTGGGTTGGGTGGTGCCGGTGACCTCCTGGTCTTGTCTGCGGGCTCCGACGGTTGCCGGCTTTCAGGGATAGGCGGATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

30.68

Weight (kDa)

8.35

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003282)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334151 RchiOBHm_Chr6g0275401
rosa_laevigata	RLG00000012330 RLG00000023103 RLG00000023473 RLG00000023476 RLG00000028751 RLG00000029476
rosa_multiflora	Rmu_co8467563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019700 Rroxscaffold_1G00039360 Rroxscaffold_3G00249990 Rroxscaffold_3G00275150 Rroxscaffold_6G00395480 Rroxscaffold_7G00190930
rosa_rugosa	Rorug03G0305200
rosa_samantha	Rh2AG435100 Rh2DG453400 Rh2DG691400 Rh3AG051100 Rh3BG052300 Rh3BG303700 Rh3CG052000 Rh3DG052700 Rh4AG232800 Rh4AG393900 Rh4BG028000 Rh4DG030700 Rh4DG400900 Rh5AG348100 Rh5AG355400 Rh5DG570200 Rh6AG205300 Rh6BG208300 Rh6BG518000 Rh7AG242500 Rh7AG438800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	356
AasI	GACNNNNNNGTC	1 cut(s)	839
Acc36I	ACCTGC	2 cut(s)	32, 356
AccB1I	GGYRCC	1 cut(s)	824
AccB7I	CCANNNNNTGG	1 cut(s)	98
AccII	CGCG	2 cut(s)	351, 722
AclWI	GGATC	5 cut(s)	107, 559, 737, 771, 804
AcoI	YGGCCR	1 cut(s)	379
AfiI	CCNNNNNNNGG	3 cut(s)	98, 388, 682
AgsI	TTSAA	1 cut(s)	707
AjnI	CCWGG	2 cut(s)	461, 837
AloI	GAACNNNNNNTCC	2 cut(s)	205, 237
AluBI	AGCT	2 cut(s)	73, 156
AluI	AGCT	2 cut(s)	73, 156
Alw21I	GWGCWC	3 cut(s)	411, 775, 808
Alw26I	GTCTC	1 cut(s)	22
Alw44I	GTGCAC	2 cut(s)	771, 804
AlwI	GGATC	5 cut(s)	107, 559, 737, 771, 804
AoxI	GGCC	4 cut(s)	140, 379, 459, 489
ApaLI	GTGCAC	2 cut(s)	771, 804
ApeKI	GCWGC	1 cut(s)	246
AspA2I	CCTAGG	1 cut(s)	412
AspLEI	GCGC	2 cut(s)	722, 793
AspS9I	GGNCC	2 cut(s)	459, 489
AsuHPI	GGTGA	5 cut(s)	238, 380, 547, 659, 842
AvrII	CCTAGG	1 cut(s)	412
BaeGI	GKGCMC	2 cut(s)	775, 808
BanI	GGYRCC	1 cut(s)	824
BanII	GRGCYC	1 cut(s)	857
Bbv12I	GWGCWC	3 cut(s)	411, 775, 808
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	5 cut(s)	92, 101, 250, 597, 680
BceAI	ACGGC	2 cut(s)	733, 804
BciT130I	CCWGG	2 cut(s)	463, 839
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	3 cut(s)	278, 413, 471
BfmI	CTRYAG	1 cut(s)	25
BfoI	RGCGCY	1 cut(s)	794
BfuAI	ACCTGC	2 cut(s)	32, 356
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	5 cut(s)	247, 337, 379, 393, 723
BlnI	CCTAGG	1 cut(s)	412
BlsI	GCNGC	5 cut(s)	248, 338, 380, 394, 724
Bme1390I	CCNGG	2 cut(s)	463, 839
BmgT120I	GGNCC	2 cut(s)	459, 489
BmiI	GGNNCC	4 cut(s)	477, 674, 826, 856
BmrFI	CCNGG	2 cut(s)	463, 839
BmrI	ACTGGG	1 cut(s)	67
BmsI	GCATC	2 cut(s)	219, 348
BmuI	ACTGGG	1 cut(s)	67
BpuEI	CTTGAG	1 cut(s)	586
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	3 cut(s)	116, 412, 492
BsaWI	WCCGGW	1 cut(s)	669
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 388, 682
Bse118I	RCCGGY	4 cut(s)	381, 581, 827, 867
Bse1I	ACTGG	8 cut(s)	62, 92, 195, 233, 427, 747, 780, 813
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	463, 839
BseDI	CCNNGG	3 cut(s)	116, 412, 492
BseGI	GGATG	7 cut(s)	174, 261, 598, 608, 661, 691, 697
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	3 cut(s)	98, 388, 682
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	8 cut(s)	62, 92, 195, 233, 427, 747, 780, 813
BseSI	GKGCMC	2 cut(s)	775, 808
BseX3I	CGGCCG	1 cut(s)	379
BseXI	GCAGC	1 cut(s)	233
BseYI	CCCAGC	2 cut(s)	133, 510
BsgI	GTGCAG	1 cut(s)	384
Bsh1236I	CGCG	2 cut(s)	351, 722
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	4 cut(s)	142, 381, 461, 491
BshNI	GGYRCC	1 cut(s)	824
BsiEI	CGRYCG	1 cut(s)	382
BsiHKAI	GWGCWC	3 cut(s)	411, 775, 808
BsiSI	CCGG	6 cut(s)	282, 382, 582, 670, 828, 868
BslFI	GGGAC	1 cut(s)	546
BslI	CCNNNNNNNGG	3 cut(s)	98, 388, 682
BsmAI	GTCTC	1 cut(s)	22
BsmBI	CGTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	546
BsmI	GAATGC	1 cut(s)	66
BsnI	GGCC	4 cut(s)	142, 381, 461, 491
Bsp1286I	GDGCHC	4 cut(s)	411, 775, 808, 857
Bsp143I	GATC	6 cut(s)	112, 551, 729, 763, 796, 887
BspANI	GGCC	4 cut(s)	142, 381, 461, 491
BspCNI	CTCAG	1 cut(s)	136
BspFNI	CGCG	2 cut(s)	351, 722
BspLI	GGNNCC	4 cut(s)	477, 674, 826, 856
BspMAI	CTGCAG	1 cut(s)	29
BspMI	ACCTGC	2 cut(s)	32, 356
BspPI	GGATC	5 cut(s)	107, 559, 737, 771, 804
BspT107I	GGYRCC	1 cut(s)	824
BsrFI	RCCGGY	4 cut(s)	381, 581, 827, 867
BsrI	ACTGG	8 cut(s)	62, 92, 195, 233, 427, 747, 780, 813
BssAI	RCCGGY	4 cut(s)	381, 581, 827, 867
BssECI	CCNNGG	3 cut(s)	116, 412, 492
BssMI	GATC	6 cut(s)	112, 551, 729, 763, 796, 887
BssT1I	CCWWGG	3 cut(s)	116, 412, 492
Bst2UI	CCWGG	2 cut(s)	463, 839
Bst4CI	ACNGT	2 cut(s)	560, 863
BstC8I	GCNNGC	4 cut(s)	64, 508, 853, 869
BstDEI	CTNAG	1 cut(s)	144
BstEII	GGTNACC	1 cut(s)	830
BstF5I	GGATG	7 cut(s)	174, 261, 598, 608, 661, 691, 697
BstFNI	CGCG	2 cut(s)	351, 722
BstH2I	RGCGCY	1 cut(s)	794
BstHHI	GCGC	2 cut(s)	722, 793
BstKTI	GATC	6 cut(s)	115, 554, 732, 766, 799, 890
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	6 cut(s)	112, 551, 729, 763, 796, 887
BstMCI	CGRYCG	1 cut(s)	382
BstMWI	GCNNNNNNNGC	9 cut(s)	33, 59, 139, 238, 309, 357, 415, 467, 512
BstNI	CCWGG	2 cut(s)	463, 839
BstPI	GGTNACC	1 cut(s)	830
BstSCI	CCNGG	2 cut(s)	461, 837
BstSFI	CTRYAG	1 cut(s)	25
BstSLI	GKGCMC	2 cut(s)	775, 808
BstUI	CGCG	2 cut(s)	351, 722
BstV1I	GCAGC	1 cut(s)	233
BstX2I	RGATCY	3 cut(s)	112, 551, 887
BstYI	RGATCY	3 cut(s)	112, 551, 887
BstZI	CGGCCG	1 cut(s)	379
BsuRI	GGCC	4 cut(s)	142, 381, 461, 491
BtsCI	GGATG	7 cut(s)	174, 261, 598, 608, 661, 691, 697
BtsI	GCAGTG	2 cut(s)	34, 367
BtsIMutI	CAGTG	6 cut(s)	34, 240, 367, 740, 773, 806
BveI	ACCTGC	2 cut(s)	32, 356
Cac8I	GCNNGC	4 cut(s)	64, 508, 853, 869
CfoI	GCGC	2 cut(s)	722, 793
Cfr10I	RCCGGY	4 cut(s)	381, 581, 827, 867
Cfr13I	GGNCC	2 cut(s)	459, 489
CseI	GACGC	1 cut(s)	277
CviAII	CATG	2 cut(s)	325, 726
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	6 cut(s)	114, 553, 731, 765, 798, 889
DpnII	GATC	6 cut(s)	112, 551, 729, 763, 796, 887
DrdI	GACNNNNNNGTC	1 cut(s)	839
DseDI	GACNNNNNNGTC	1 cut(s)	839
EaeI	YGGCCR	1 cut(s)	379
EagI	CGGCCG	1 cut(s)	379
EclXI	CGGCCG	1 cut(s)	379
Eco130I	CCWWGG	3 cut(s)	116, 412, 492
Eco24I	GRGCYC	1 cut(s)	857
Eco52I	CGGCCG	1 cut(s)	379
Eco91I	GGTNACC	1 cut(s)	830
EcoO65I	GGTNACC	1 cut(s)	830
EcoRII	CCWGG	2 cut(s)	461, 837
EcoT14I	CCWWGG	3 cut(s)	116, 412, 492
EcoT38I	GRGCYC	1 cut(s)	857
ErhI	CCWWGG	3 cut(s)	116, 412, 492
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	2 cut(s)	328, 729
FaiI	YATR	3 cut(s)	326, 701, 727
FalI	AAGNNNNNCTT	4 cut(s)	538, 570, 610, 642
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	2 cut(s)	324, 725
FauI	CCCGC	1 cut(s)	844
Fnu4HI	GCNGC	5 cut(s)	247, 337, 379, 393, 723
FokI	GGATG	7 cut(s)	181, 268, 605, 615, 668, 698, 704
FriOI	GRGCYC	1 cut(s)	857
Fsp4HI	GCNGC	5 cut(s)	247, 337, 379, 393, 723
FspBI	CTAG	3 cut(s)	278, 413, 471
GlaI	GCGC	2 cut(s)	721, 792
GluI	GCNGC	5 cut(s)	247, 337, 379, 393, 723
GsaI	CCCAGC	2 cut(s)	137, 514
HaeII	RGCGCY	1 cut(s)	794
HaeIII	GGCC	4 cut(s)	142, 381, 461, 491
HapII	CCGG	6 cut(s)	282, 382, 582, 670, 828, 868
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	2 cut(s)	722, 793
Hin1II	CATG	2 cut(s)	328, 729
Hin6I	GCGC	2 cut(s)	720, 791
HinP1I	GCGC	2 cut(s)	720, 791
HpaII	CCGG	6 cut(s)	282, 382, 582, 670, 828, 868
HphI	GGTGA	5 cut(s)	238, 380, 547, 659, 842
Hpy166II	GTNNAC	2 cut(s)	773, 806
Hpy188I	TCNGA	3 cut(s)	346, 648, 859
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	2 cut(s)	773, 806
Hpy99I	CGWCG	2 cut(s)	271, 863
HpyAV	CCTTC	4 cut(s)	612, 616, 674, 676
HpyCH4III	ACNGT	2 cut(s)	560, 863
HpyCH4V	TGCA	5 cut(s)	27, 365, 740, 773, 806
HpyF10VI	GCNNNNNNNGC	9 cut(s)	33, 59, 139, 238, 309, 357, 415, 467, 512
HpyF3I	CTNAG	1 cut(s)	144
Hsp92II	CATG	2 cut(s)	328, 729
HspAI	GCGC	2 cut(s)	720, 791
KroI	GCCGGC	1 cut(s)	867
KroNI	GCCGGC	1 cut(s)	869
Kzo9I	GATC	6 cut(s)	112, 551, 729, 763, 796, 887
LmnI	GCTCC	5 cut(s)	45, 153, 238, 414, 860
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	2 cut(s)	219, 348
MaeI	CTAG	3 cut(s)	278, 413, 471
MaeIII	GTNAC	1 cut(s)	830
MalI	GATC	6 cut(s)	114, 553, 731, 765, 798, 889
MboI	GATC	6 cut(s)	112, 551, 729, 763, 796, 887
MflI	RGATCY	3 cut(s)	112, 551, 887
MhlI	GDGCHC	4 cut(s)	411, 775, 808, 857
MluCI	AATT	1 cut(s)	522
MmeI	TCCRAC	3 cut(s)	727, 760, 882
MnlI	CCTC	4 cut(s)	190, 350, 489, 845
MroNI	GCCGGC	1 cut(s)	867
MseI	TTAA	3 cut(s)	521, 545, 892
MspA1I	CMGCKG	2 cut(s)	73, 336
MspI	CCGG	6 cut(s)	282, 382, 582, 670, 828, 868
MspR9I	CCNGG	2 cut(s)	463, 839
Mva1269I	GAATGC	1 cut(s)	66
MvaI	CCWGG	2 cut(s)	463, 839
MvnI	CGCG	2 cut(s)	351, 722
MwoI	GCNNNNNNNGC	9 cut(s)	33, 59, 139, 238, 309, 357, 415, 467, 512
NaeI	GCCGGC	1 cut(s)	869
NdeII	GATC	6 cut(s)	112, 551, 729, 763, 796, 887
NgoMIV	GCCGGC	1 cut(s)	867
NlaIII	CATG	2 cut(s)	328, 729
NlaIV	GGNNCC	4 cut(s)	477, 674, 826, 856
NmuCI	GTSAC	1 cut(s)	830
PaqCI	CACCTGC	1 cut(s)	356
PctI	GAATGC	1 cut(s)	66
PdiI	GCCGGC	1 cut(s)	869
PflMI	CCANNNNNTGG	1 cut(s)	98
PkrI	GCNGC	5 cut(s)	248, 338, 380, 394, 724
Psp6I	CCWGG	2 cut(s)	461, 837
PspEI	GGTNACC	1 cut(s)	830
PspFI	CCCAGC	2 cut(s)	133, 510
PspGI	CCWGG	2 cut(s)	461, 837
PspN4I	GGNNCC	4 cut(s)	477, 674, 826, 856
PspPI	GGNCC	2 cut(s)	459, 489
PstI	CTGCAG	1 cut(s)	29
PsuI	RGATCY	3 cut(s)	112, 551, 887
PvuII	CAGCTG	1 cut(s)	73
SaqAI	TTAA	3 cut(s)	521, 545, 892
SatI	GCNGC	5 cut(s)	247, 337, 379, 393, 723
Sau3AI	GATC	6 cut(s)	112, 551, 729, 763, 796, 887
Sau96I	GGNCC	2 cut(s)	459, 489
ScrFI	CCNGG	2 cut(s)	463, 839
SduI	GDGCHC	4 cut(s)	411, 775, 808, 857
SfaNI	GCATC	2 cut(s)	219, 348
SfcI	CTRYAG	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	565
SmoI	CTYRAG	1 cut(s)	565
Sse9I	AATT	1 cut(s)	522
SspMI	CTAG	3 cut(s)	278, 413, 471
StyD4I	CCNGG	2 cut(s)	461, 837
StyI	CCWWGG	3 cut(s)	116, 412, 492
TaaI	ACNGT	2 cut(s)	560, 863
TaqI	TCGA	3 cut(s)	20, 481, 629
TasI	AATT	1 cut(s)	522
TauI	GCSGC	4 cut(s)	339, 381, 395, 725
Tru1I	TTAA	3 cut(s)	521, 545, 892
Tru9I	TTAA	3 cut(s)	521, 545, 892
TscAI	CASTG	6 cut(s)	34, 240, 367, 747, 780, 813
TseFI	GTSAC	1 cut(s)	830
TseI	GCWGC	1 cut(s)	246
Tsp45I	GTSAC	1 cut(s)	830
TspDTI	ATGAA	1 cut(s)	695
TspGWI	ACGGA	4 cut(s)	724, 728, 766, 799
TspRI	CASTG	6 cut(s)	34, 240, 367, 747, 780, 813
Van91I	CCANNNNNTGG	1 cut(s)	98
VneI	GTGCAC	2 cut(s)	771, 804
XcmI	CCANNNNNNNNNTGG	1 cut(s)	683
XmaJI	CCTAGG	1 cut(s)	412
XspI	CTAG	3 cut(s)	278, 413, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.