Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003282

Physical Location & Seq

Genomic Coordinates Reverse (-)

39195923 .. 39201303

Gene Structure 5381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG208300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCTTCGGCGACAAAACTTTTGGCTGGGGTTGTTGGTCGCTTTTGCTTTGGTGGCGGTAAAGGTGGCATGGCCATCGGCGGCACCTTTGACTGCGATAGAGGCAGTGCAGGTGGAGTCGGCGGCGGGTCTTTGGCGGCTATAGAGATGGTGCTCCTAGGGCGAACTGGAGCTCTTGTTGGGGCTGGACTCAGTTGGGGTTGGGCCTGGTGTGCTAGGGTTCCTCGATTTTGGGCCTTGGTAGTGTGGGCCTGGCCTGATTGGTTTCATAGAAATGATTTTCATCAGAAGGCTGTCCATCCTAGCTATTGGTCACCGATCTCTGTAGGCCTCAGTGGTGAAGCAATGTTTCATCGACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

12.69

Weight (kDa)

9.41

Isoelectric Point (pI)

18.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003282)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334151 RchiOBHm_Chr6g0275401
rosa_laevigata	RLG00000012330 RLG00000023103 RLG00000023473 RLG00000023476 RLG00000028751 RLG00000029476
rosa_multiflora	Rmu_co8467563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019700 Rroxscaffold_1G00039360 Rroxscaffold_3G00249990 Rroxscaffold_3G00275150 Rroxscaffold_6G00395480 Rroxscaffold_7G00190930
rosa_rugosa	Rorug03G0305200
rosa_samantha	Rh2AG435100 Rh2DG453400 Rh2DG691400 Rh3AG051100 Rh3BG052300 Rh3BG303700 Rh3CG052000 Rh3DG052700 Rh4AG232800 Rh4AG393900 Rh4BG028000 Rh4DG030700 Rh4DG400900 Rh5AG348100 Rh5AG355400 Rh5DG570200 Rh6AG205300 Rh6BG208300 Rh6BG518000 Rh7AG242500 Rh7AG438800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	101
Acc36I	ACCTGC	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	83
AciI	CCGC	5 cut(s)	57, 81, 123, 126, 137
AcoI	YGGCCR	1 cut(s)	72
AjnI	CCWGG	2 cut(s)	206, 251
AluBI	AGCT	2 cut(s)	173, 306
AluI	AGCT	2 cut(s)	173, 306
Alw21I	GWGCWC	2 cut(s)	156, 175
AoxI	GGCC	6 cut(s)	72, 204, 234, 249, 254, 328
ArsI	GACNNNNNNTTYG	1 cut(s)	36
AspA2I	CCTAGG	1 cut(s)	157
AspS9I	GGNCC	3 cut(s)	204, 234, 249
AsuHPI	GGTGA	2 cut(s)	306, 350
AvrII	CCTAGG	1 cut(s)	157
BalI	TGGCCA	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	175
Bbv12I	GWGCWC	2 cut(s)	156, 175
BccI	CCATC	3 cut(s)	83, 142, 306
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciT130I	CCWGG	2 cut(s)	208, 253
BfaI	CTAG	3 cut(s)	158, 216, 303
BfmI	CTRYAG	2 cut(s)	141, 324
BfuAI	ACCTGC	1 cut(s)	101
BisI	GCNGC	3 cut(s)	82, 124, 138
BlnI	CCTAGG	1 cut(s)	157
BlsI	GCNGC	3 cut(s)	83, 125, 139
Bme1390I	CCNGG	2 cut(s)	208, 253
BmgT120I	GGNCC	3 cut(s)	204, 234, 249
BmiI	GGNNCC	2 cut(s)	85, 222
BmrFI	CCNGG	2 cut(s)	208, 253
BpmI	CTGGAG	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	157, 237
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bse1I	ACTGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	2 cut(s)	208, 253
BseDI	CCNNGG	2 cut(s)	157, 237
BseGI	GGATG	1 cut(s)	298
BseJI	GATNNNNATC	1 cut(s)	282
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	2 cut(s)	205, 346
BseNI	ACTGG	1 cut(s)	172
BseYI	CCCAGC	1 cut(s)	26
BsgI	GTGCAG	1 cut(s)	129
BshFI	GGCC	6 cut(s)	74, 206, 236, 251, 256, 330
BshNI	GGYRCC	1 cut(s)	83
BsiHKAI	GWGCWC	2 cut(s)	156, 175
BsnI	GGCC	6 cut(s)	74, 206, 236, 251, 256, 330
Bsp1286I	GDGCHC	2 cut(s)	156, 175
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	5 cut(s)	57, 81, 123, 126, 137
BspANI	GGCC	6 cut(s)	74, 206, 236, 251, 256, 330
BspCNI	CTCAG	2 cut(s)	204, 345
BspLI	GGNNCC	2 cut(s)	85, 222
BspMI	ACCTGC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	157, 237
BssMI	GATC	1 cut(s)	318
BssT1I	CCWWGG	2 cut(s)	157, 237
Bst2UI	CCWGG	2 cut(s)	208, 253
BstDEI	CTNAG	2 cut(s)	191, 332
BstEII	GGTNACC	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 102, 160, 212
BstNI	CCWGG	2 cut(s)	208, 253
BstPI	GGTNACC	1 cut(s)	312
BstSCI	CCNGG	2 cut(s)	206, 251
BstSFI	CTRYAG	2 cut(s)	141, 324
BsuRI	GGCC	6 cut(s)	74, 206, 236, 251, 256, 330
BtsCI	GGATG	1 cut(s)	298
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	2 cut(s)	112, 340
BveI	ACCTGC	1 cut(s)	101
Cfr13I	GGNCC	3 cut(s)	204, 234, 249
CviAII	CATG	1 cut(s)	70
DdeI	CTNAG	2 cut(s)	191, 332
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	157, 237
Eco147I	AGGCCT	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	173
Eco91I	GGTNACC	1 cut(s)	312
EcoICRI	GAGCTC	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	312
EcoRII	CCWGG	2 cut(s)	206, 251
EcoT14I	CCWWGG	2 cut(s)	157, 237
EcoT38I	GRGCYC	1 cut(s)	175
ErhI	CCWWGG	2 cut(s)	157, 237
FaeI	CATG	1 cut(s)	73
FaiI	YATR	3 cut(s)	71, 143, 270
FatI	CATG	1 cut(s)	69
FauI	CCCGC	1 cut(s)	119
Fnu4HI	GCNGC	3 cut(s)	82, 124, 138
FokI	GGATG	1 cut(s)	285
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	3 cut(s)	82, 124, 138
FspBI	CTAG	3 cut(s)	158, 216, 303
GluI	GCNGC	3 cut(s)	82, 124, 138
GsaI	CCCAGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	6 cut(s)	74, 206, 236, 251, 256, 330
Hin1II	CATG	1 cut(s)	73
HinfI	GANTC	3 cut(s)	117, 189, 357
HphI	GGTGA	2 cut(s)	306, 350
Hpy188I	TCNGA	1 cut(s)	288
HpyAV	CCTTC	1 cut(s)	283
HpyCH4V	TGCA	1 cut(s)	110
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 102, 160, 212
HpyF3I	CTNAG	2 cut(s)	191, 332
Hsp92II	CATG	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	318
LmnI	GCTCC	2 cut(s)	159, 170
LpnPI	CCDG	9 cut(s)	12, 96, 153, 171, 193, 220, 238, 265, 270
MaeI	CTAG	3 cut(s)	158, 216, 303
MaeIII	GTNAC	1 cut(s)	312
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MhlI	GDGCHC	2 cut(s)	156, 175
MlsI	TGGCCA	1 cut(s)	74
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	3 cut(s)	126, 183, 351
MnlI	CCTC	3 cut(s)	95, 234, 341
Mox20I	TGGCCA	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	74
MslI	CAYNNNNRTG	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	74
MspR9I	CCNGG	2 cut(s)	208, 253
MvaI	CCWGG	2 cut(s)	208, 253
MwoI	GCNNNNNNNGC	4 cut(s)	54, 102, 160, 212
NdeII	GATC	1 cut(s)	318
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	2 cut(s)	85, 222
NmuCI	GTSAC	1 cut(s)	312
PaqCI	CACCTGC	1 cut(s)	101
PceI	AGGCCT	1 cut(s)	330
PkrI	GCNGC	3 cut(s)	83, 125, 139
PleI	GAGTC	3 cut(s)	125, 183, 351
PpsI	GAGTC	3 cut(s)	125, 183, 351
Psp124BI	GAGCTC	1 cut(s)	175
Psp6I	CCWGG	2 cut(s)	206, 251
PspEI	GGTNACC	1 cut(s)	312
PspFI	CCCAGC	1 cut(s)	26
PspGI	CCWGG	2 cut(s)	206, 251
PspN4I	GGNNCC	2 cut(s)	85, 222
PspPI	GGNCC	3 cut(s)	204, 234, 249
RseI	CAYNNNNRTG	1 cut(s)	273
SacI	GAGCTC	1 cut(s)	175
SatI	GCNGC	3 cut(s)	82, 124, 138
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	3 cut(s)	204, 234, 249
SchI	GAGTC	3 cut(s)	126, 183, 351
ScrFI	CCNGG	2 cut(s)	208, 253
SduI	GDGCHC	2 cut(s)	156, 175
SetI	ASST	5 cut(s)	67, 89, 115, 175, 308
SfcI	CTRYAG	2 cut(s)	141, 324
SmiMI	CAYNNNNRTG	1 cut(s)	273
SseBI	AGGCCT	1 cut(s)	330
SsiI	CCGC	5 cut(s)	57, 81, 123, 126, 137
SspMI	CTAG	3 cut(s)	158, 216, 303
SstI	GAGCTC	1 cut(s)	175
StuI	AGGCCT	1 cut(s)	330
StyD4I	CCNGG	2 cut(s)	206, 251
StyI	CCWWGG	2 cut(s)	157, 237
TaqI	TCGA	2 cut(s)	226, 355
TauI	GCSGC	3 cut(s)	84, 126, 140
TscAI	CASTG	2 cut(s)	112, 340
TseFI	GTSAC	1 cut(s)	312
Tsp45I	GTSAC	1 cut(s)	312
TspDTI	ATGAA	3 cut(s)	257, 272, 341
TspRI	CASTG	2 cut(s)	112, 340
XmaJI	CCTAGG	1 cut(s)	157
XspI	CTAG	3 cut(s)	158, 216, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.