Rh3CG052000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0003282
Physical Location & Seq
Forward (+)
3581752 .. 3582216
465 bp
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UTR
Exon/CDS
Intron
Rh3CG052000.1

Sequence Viewer

Length: 465 bp
ATGAGGGCAGGGGTCATCTCGACTTGCAATGGTGGCTGGTTTGGCAACAAAGACAACTGGGCTGGCATTAAGCCGTCGTTTGGGGCTTTACCAGTTGATGGATGTGATGGAGATCCTGGGGTTAATTTAGGGCTGGTTTGGCCTGAGATTGGAAGCTATCAGGTTGGGATGATTACTCCCTCCTCCAACATAGCCAGTTTTGGTAGAAGTGGGATATTGGATTCGGTGATGCCAGCGGAGCAATGCTACTCGTGGATGGCTTCGGCGGGGCAACCTCTGACCGGGGTCGTTAGTCGTTCTTGCTTTGGTGGCGGTAAAGGTGGCATGGCTATCGGCGGCATCTCTGACGGCGATGGAGGCAATGCAGGTGGAGTCGGCGACCGGTCTTTGGCAGCGACAAGGTTGGTGCTCCTAGGGCGAACTGGATATCTTGGTGGGGTTGTGTTCAGTTGGGTTTGGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

15.55

Weight (kDa)

5.12

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 356
Acc36I ACCTGC 1 cut(s) 356
AccB7I CCANNNNNTGG 1 cut(s) 98
AciI CCGC 4 cut(s) 236, 266, 312, 336
AclWI GGATC 1 cut(s) 107
AfiI CCNNNNNNNGG 5 cut(s) 80, 98, 149, 281, 388
AgeI ACCGGT 1 cut(s) 381
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
Alw21I GWGCWC 1 cut(s) 411
AlwI GGATC 1 cut(s) 107
AoxI GGCC 2 cut(s) 140, 459
ApeKI GCWGC 1 cut(s) 392
AsiGI ACCGGT 1 cut(s) 381
AspA2I CCTAGG 1 cut(s) 412
AspS9I GGNCC 1 cut(s) 459
AsuC2I CCSGG 1 cut(s) 283
AsuHPI GGTGA 1 cut(s) 238
AvrII CCTAGG 1 cut(s) 412
BauI CACGAG 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 411
BbvI GCAGC 1 cut(s) 404
BccI CCATC 4 cut(s) 92, 101, 250, 347
BceAI ACGGC 2 cut(s) 58, 364
BcgI CGANNNNNNTGC 2 cut(s) 313, 347
BciT130I CCWGG 1 cut(s) 117
BcnI CCSGG 1 cut(s) 283
BfaI CTAG 2 cut(s) 413, 463
BfuAI ACCTGC 1 cut(s) 356
BisI GCNGC 2 cut(s) 337, 393
BlnI CCTAGG 1 cut(s) 412
BlsI GCNGC 2 cut(s) 338, 394
Bme1390I CCNGG 2 cut(s) 117, 283
BmgT120I GGNCC 1 cut(s) 459
BmrFI CCNGG 2 cut(s) 117, 283
BmrI ACTGGG 1 cut(s) 67
BmsI GCATC 2 cut(s) 219, 348
BmuI ACTGGG 1 cut(s) 67
BoxI GACNNNNGTC 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 283
BsaBI GATNNNNATC 1 cut(s) 111
BsaJI CCNNGG 3 cut(s) 116, 282, 412
BsaWI WCCGGW 1 cut(s) 381
Bsc4I CCNNNNNNNGG 5 cut(s) 80, 98, 149, 281, 388
Bse118I RCCGGY 1 cut(s) 381
Bse1I ACTGG 4 cut(s) 62, 92, 195, 427
Bse3DI GCAATG 3 cut(s) 34, 248, 367
Bse8I GATNNNNATC 1 cut(s) 111
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 3 cut(s) 116, 282, 412
BseGI GGATG 3 cut(s) 107, 174, 261
BseJI GATNNNNATC 1 cut(s) 111
BseLI CCNNNNNNNGG 5 cut(s) 80, 98, 149, 281, 388
BseMI GCAATG 3 cut(s) 34, 248, 367
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 4 cut(s) 62, 92, 195, 427
BseRI GAGGAG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 404
Bsh1285I CGRYCG 1 cut(s) 382
BshFI GGCC 2 cut(s) 142, 461
BshTI ACCGGT 1 cut(s) 381
BsiEI CGRYCG 1 cut(s) 382
BsiHKAI GWGCWC 1 cut(s) 411
BsiSI CCGG 2 cut(s) 282, 382
BslI CCNNNNNNNGG 5 cut(s) 80, 98, 149, 281, 388
BsnI GGCC 2 cut(s) 142, 461
Bsp1286I GDGCHC 1 cut(s) 411
Bsp143I GATC 1 cut(s) 112
BspACI CCGC 4 cut(s) 236, 266, 312, 336
BspANI GGCC 2 cut(s) 142, 461
BspCNI CTCAG 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 356
BspPI GGATC 1 cut(s) 107
BsrDI GCAATG 3 cut(s) 34, 248, 367
BsrFI RCCGGY 1 cut(s) 381
BsrI ACTGG 4 cut(s) 62, 92, 195, 427
BssAI RCCGGY 1 cut(s) 381
BssECI CCNNGG 3 cut(s) 116, 282, 412
BssMI GATC 1 cut(s) 112
BssSI CACGAG 1 cut(s) 250
BssT1I CCWWGG 1 cut(s) 412
Bst2BI CACGAG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 64, 234
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 3 cut(s) 107, 174, 261
BstKTI GATC 1 cut(s) 115
BstMBI GATC 1 cut(s) 112
BstMCI CGRYCG 1 cut(s) 382
BstMWI GCNNNNNNNGC 7 cut(s) 33, 42, 139, 238, 309, 357, 415
BstNI CCWGG 1 cut(s) 117
BstPAI GACNNNNGTC 1 cut(s) 284
BstSCI CCNGG 2 cut(s) 115, 281
BstV1I GCAGC 1 cut(s) 404
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 2 cut(s) 142, 461
BtgZI GCGATG 1 cut(s) 366
BtsCI GGATG 3 cut(s) 107, 174, 261
BveI ACCTGC 1 cut(s) 356
Cac8I GCNNGC 2 cut(s) 64, 234
Cfr10I RCCGGY 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 459
CspAI ACCGGT 1 cut(s) 381
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
CviAII CATG 1 cut(s) 325
DdeI CTNAG 1 cut(s) 144
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 412
Eco32I GATATC 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 115
EcoRV GATATC 1 cut(s) 428
EcoT14I CCWWGG 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 412
FaeI CATG 1 cut(s) 328
FaiI YATR 2 cut(s) 191, 326
FatI CATG 1 cut(s) 324
FauI CCCGC 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 337, 393
FokI GGATG 3 cut(s) 114, 181, 268
Fsp4HI GCNGC 2 cut(s) 337, 393
FspBI CTAG 2 cut(s) 413, 463
GluI GCNGC 2 cut(s) 337, 393
HaeIII GGCC 2 cut(s) 142, 461
HapII CCGG 2 cut(s) 282, 382
Hin1II CATG 1 cut(s) 328
HinfI GANTC 2 cut(s) 221, 372
HpaII CCGG 2 cut(s) 282, 382
HphI GGTGA 1 cut(s) 238
Hpy188I TCNGA 2 cut(s) 279, 346
Hpy188III TCNNGA 1 cut(s) 19
Hpy99I CGWCG 1 cut(s) 79
HpyCH4V TGCA 2 cut(s) 27, 365
HpyF10VI GCNNNNNNNGC 7 cut(s) 33, 42, 139, 238, 309, 357, 415
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 1 cut(s) 328
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 2 cut(s) 238, 414
Lsp1109I GCAGC 1 cut(s) 404
LweI GCATC 2 cut(s) 219, 348
MaeI CTAG 2 cut(s) 413, 463
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 1 cut(s) 411
MluCI AATT 1 cut(s) 124
MlyI GAGTC 1 cut(s) 381
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 4 cut(s) 190, 193, 285, 350
MseI TTAA 2 cut(s) 69, 123
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 2 cut(s) 282, 382
MspR9I CCNGG 2 cut(s) 117, 283
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 7 cut(s) 33, 42, 139, 238, 309, 357, 415
NciI CCSGG 1 cut(s) 283
NdeII GATC 1 cut(s) 112
NlaIII CATG 1 cut(s) 328
PaqCI CACCTGC 1 cut(s) 356
PfeI GAWTC 1 cut(s) 221
PflMI CCANNNNNTGG 1 cut(s) 98
PinAI ACCGGT 1 cut(s) 381
PkrI GCNGC 2 cut(s) 338, 394
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
PshAI GACNNNNGTC 1 cut(s) 284
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspPI GGNCC 1 cut(s) 459
PsuI RGATCY 1 cut(s) 112
SaqAI TTAA 2 cut(s) 69, 123
SatI GCNGC 2 cut(s) 337, 393
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 1 cut(s) 459
SchI GAGTC 1 cut(s) 381
ScrFI CCNGG 2 cut(s) 117, 283
SduI GDGCHC 1 cut(s) 411
SetI ASST 6 cut(s) 158, 165, 277, 322, 370, 404
SfaNI GCATC 2 cut(s) 219, 348
Sse9I AATT 1 cut(s) 124
SsiI CCGC 4 cut(s) 236, 266, 312, 336
SspMI CTAG 2 cut(s) 413, 463
StyD4I CCNGG 2 cut(s) 115, 281
StyI CCWWGG 1 cut(s) 412
TaqI TCGA 1 cut(s) 20
TasI AATT 1 cut(s) 124
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 2 cut(s) 69, 123
Tru9I TTAA 2 cut(s) 69, 123
TseI GCWGC 1 cut(s) 392
Van91I CCANNNNNTGG 1 cut(s) 98
XmaJI CCTAGG 1 cut(s) 412
XspI CTAG 2 cut(s) 413, 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.