Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003282

Physical Location & Seq

Genomic Coordinates Reverse (-)

27432960 .. 27435047

Gene Structure 2088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028751

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGACATCTCTCTCAACCAGCATAGCCGGTATTGGTAGAAATGGGATGCTGGTTTTGTCTGGGTTGCTAGAGGAGCAACTTTGCTCCAGGTTGCTTTTGGCAATGCAACTTATGGCCGGGGTTGTGGTGCGTTTCTGTTTTAGTGGTGGCAACAGCAGCATAGCCACTAGCGGCATCTTTGATGACAATAGAGGCAGTGCAGGTGTCGACGGCGGCGGGTCTTTGGCGACGACAGAGATGGTGTTCCTAAGGCGAACTGGAGCTCTTGGGACTGAGCTCACGAAGGATCGTTTCCATCCCCAAAACAAGGAGATGGCAATCTGGTATACTGTGGTAATTTGGCTCCGACTTGCAGGAGCTGTAAAGTTGAGAGATGGTATCGCCATAGGGATGCTGTGTCTAGTTGCAGTGAGAACACCACAGTGGCGGCGCTTTGCAGCGGTGCTTATTGTTAGTGCTGATATTGACCGAAAGGCAGTGGCCATCCTGGAGGATGATGTGCCCAAAGCACATTGGGCCACGACGACGTTGATCGCGAGTGCAGAAGAGGGCGAGCCAAAAGTGGGTTGTGTGCCCAGATCGGATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

20.95

Weight (kDa)

7.68

Isoelectric Point (pI)

31.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003282)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334151 RchiOBHm_Chr6g0275401
rosa_laevigata	RLG00000012330 RLG00000023103 RLG00000023473 RLG00000023476 RLG00000028751 RLG00000029476
rosa_multiflora	Rmu_co8467563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019700 Rroxscaffold_1G00039360 Rroxscaffold_3G00249990 Rroxscaffold_3G00275150 Rroxscaffold_6G00395480 Rroxscaffold_7G00190930
rosa_rugosa	Rorug03G0305200
rosa_samantha	Rh2AG435100 Rh2DG453400 Rh2DG691400 Rh3AG051100 Rh3BG052300 Rh3BG303700 Rh3CG052000 Rh3DG052700 Rh4AG232800 Rh4AG393900 Rh4BG028000 Rh4DG030700 Rh4DG400900 Rh5AG348100 Rh5AG355400 Rh5DG570200 Rh6AG205300 Rh6BG208300 Rh6BG518000 Rh7AG242500 Rh7AG438800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	191
Acc36I	ACCTGC	1 cut(s)	191
AccI	GTMKAC	2 cut(s)	207, 326
AccII	CGCG	1 cut(s)	536
AciI	CCGC	5 cut(s)	171, 213, 216, 427, 440
AclWI	GGATC	1 cut(s)	294
AcoI	YGGCCR	2 cut(s)	114, 480
AfiI	CCNNNNNNNGG	2 cut(s)	307, 563
AjnI	CCWGG	2 cut(s)	86, 486
AleI	CACNNNNGTG	1 cut(s)	421
AluBI	AGCT	3 cut(s)	263, 277, 359
AluI	AGCT	3 cut(s)	263, 277, 359
Alw21I	GWGCWC	2 cut(s)	265, 279
AlwI	GGATC	1 cut(s)	294
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	3 cut(s)	114, 480, 516
ApeKI	GCWGC	2 cut(s)	156, 437
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	516
AsuC2I	CCSGG	1 cut(s)	118
AxyI	CCTNAGG	1 cut(s)	248
BaeGI	GKGCMC	2 cut(s)	504, 576
BalI	TGGCCA	1 cut(s)	482
BanII	GRGCYC	2 cut(s)	265, 279
Bbv12I	GWGCWC	2 cut(s)	265, 279
BbvI	GCAGC	2 cut(s)	168, 449
BccI	CCATC	5 cut(s)	232, 303, 307, 368, 491
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	2 cut(s)	88, 488
BcnI	CCSGG	1 cut(s)	118
BfaI	CTAG	3 cut(s)	68, 168, 401
BfoI	RGCGCY	1 cut(s)	433
BfuAI	ACCTGC	1 cut(s)	191
BisI	GCNGC	5 cut(s)	157, 172, 214, 428, 438
BlsI	GCNGC	5 cut(s)	158, 173, 215, 429, 439
Bme1390I	CCNGG	3 cut(s)	88, 118, 488
BmgT120I	GGNCC	1 cut(s)	516
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	3 cut(s)	88, 118, 488
BmsI	GCATC	3 cut(s)	36, 183, 381
BpmI	CTGGAG	3 cut(s)	70, 279, 509
BpuMI	CCSGG	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 563
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	262
Bse21I	CCTNAGG	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	108
Bse8I	GATNNNNATC	1 cut(s)	317
BseBI	CCWGG	2 cut(s)	88, 488
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	5 cut(s)	51, 295, 396, 483, 499
BseJI	GATNNNNATC	1 cut(s)	317
BseLI	CCNNNNNNNGG	2 cut(s)	307, 563
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	1 cut(s)	86
BseSI	GKGCMC	2 cut(s)	504, 576
BseXI	GCAGC	2 cut(s)	168, 449
BsgI	GTGCAG	2 cut(s)	219, 561
Bsh1236I	CGCG	1 cut(s)	536
BshFI	GGCC	3 cut(s)	116, 482, 518
BsiHKAI	GWGCWC	2 cut(s)	265, 279
BsiSI	CCGG	2 cut(s)	27, 117
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	2 cut(s)	307, 563
BsmFI	GGGAC	1 cut(s)	283
BsnI	GGCC	3 cut(s)	116, 482, 518
Bsp1286I	GDGCHC	4 cut(s)	265, 279, 504, 576
Bsp143I	GATC	3 cut(s)	286, 531, 578
Bsp68I	TCGCGA	1 cut(s)	536
BspACI	CCGC	5 cut(s)	171, 213, 216, 427, 440
BspANI	GGCC	3 cut(s)	116, 482, 518
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	536
BspLI	GGNNCC	1 cut(s)	344
BspMI	ACCTGC	1 cut(s)	191
BspPI	GGATC	1 cut(s)	294
BsrDI	GCAATG	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	262
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	3 cut(s)	286, 531, 578
BssNAI	GTATAC	1 cut(s)	327
Bst1107I	GTATAC	1 cut(s)	327
Bst2UI	CCWGG	2 cut(s)	88, 488
Bst4CI	ACNGT	2 cut(s)	331, 423
Bst6I	CTCTTC	1 cut(s)	540
BstC8I	GCNNGC	1 cut(s)	554
BstDEI	CTNAG	2 cut(s)	248, 273
BstF5I	GGATG	5 cut(s)	51, 295, 396, 483, 499
BstFNI	CGCG	1 cut(s)	536
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	3 cut(s)	289, 534, 581
BstMBI	GATC	3 cut(s)	286, 531, 578
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 156, 515
BstNI	CCWGG	2 cut(s)	88, 488
BstSCI	CCNGG	3 cut(s)	86, 116, 486
BstSLI	GKGCMC	2 cut(s)	504, 576
BstUI	CGCG	1 cut(s)	536
BstV1I	GCAGC	2 cut(s)	168, 449
BstZ17I	GTATAC	1 cut(s)	327
Bsu36I	CCTNAGG	1 cut(s)	248
BsuRI	GGCC	3 cut(s)	116, 482, 518
BtsCI	GGATG	5 cut(s)	51, 295, 396, 483, 499
BtsI	GCAGTG	3 cut(s)	202, 414, 483
BtsIMutI	CAGTG	4 cut(s)	202, 414, 428, 483
BtuMI	TCGCGA	1 cut(s)	536
BveI	ACCTGC	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	554
CaiI	CAGNNNCTG	1 cut(s)	359
CfoI	GCGC	1 cut(s)	432
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	516
DdeI	CTNAG	2 cut(s)	248, 273
DpnI	GATC	3 cut(s)	288, 533, 580
DpnII	GATC	3 cut(s)	286, 531, 578
EaeI	YGGCCR	2 cut(s)	114, 480
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Ecl136II	GAGCTC	2 cut(s)	263, 277
Eco24I	GRGCYC	2 cut(s)	265, 279
Eco53kI	GAGCTC	2 cut(s)	263, 277
Eco81I	CCTNAGG	1 cut(s)	248
EcoICRI	GAGCTC	2 cut(s)	263, 277
EcoRII	CCWGG	2 cut(s)	86, 486
EcoT38I	GRGCYC	2 cut(s)	265, 279
FaiI	YATR	5 cut(s)	23, 113, 161, 327, 386
FaqI	GGGAC	1 cut(s)	283
FauI	CCCGC	1 cut(s)	209
FblI	GTMKAC	2 cut(s)	207, 326
Fnu4HI	GCNGC	5 cut(s)	157, 172, 214, 428, 438
FokI	GGATG	5 cut(s)	58, 282, 403, 470, 506
FriOI	GRGCYC	2 cut(s)	265, 279
Fsp4HI	GCNGC	5 cut(s)	157, 172, 214, 428, 438
FspBI	CTAG	3 cut(s)	68, 168, 401
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	5 cut(s)	157, 172, 214, 428, 438
GsuI	CTGGAG	3 cut(s)	70, 279, 509
HaeII	RGCGCY	1 cut(s)	433
HaeIII	GGCC	3 cut(s)	116, 482, 518
HapII	CCGG	2 cut(s)	27, 117
HhaI	GCGC	1 cut(s)	432
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HpaII	CCGG	2 cut(s)	27, 117
Hpy166II	GTNNAC	2 cut(s)	208, 327
Hpy188I	TCNGA	2 cut(s)	347, 583
Hpy188III	TCNNGA	2 cut(s)	280, 535
Hpy8I	GTNNAC	2 cut(s)	208, 327
Hpy99I	CGWCG	4 cut(s)	212, 232, 526, 529
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	2 cut(s)	331, 423
HpyCH4IV	ACGT	1 cut(s)	527
HpyCH4V	TGCA	6 cut(s)	106, 200, 353, 407, 437, 542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 156, 515
HpyF3I	CTNAG	2 cut(s)	248, 273
HpySE526I	ACGT	1 cut(s)	527
HspAI	GCGC	1 cut(s)	430
Kzo9I	GATC	3 cut(s)	286, 531, 578
LmnI	GCTCC	5 cut(s)	73, 89, 260, 348, 356
Lsp1109I	GCAGC	2 cut(s)	168, 449
LweI	GCATC	3 cut(s)	36, 183, 381
MaeI	CTAG	3 cut(s)	68, 168, 401
MaeII	ACGT	1 cut(s)	527
MalI	GATC	3 cut(s)	288, 533, 580
MboI	GATC	3 cut(s)	286, 531, 578
MboII	GAAGA	1 cut(s)	557
MhlI	GDGCHC	4 cut(s)	265, 279, 504, 576
MlsI	TGGCCA	1 cut(s)	482
MluCI	AATT	1 cut(s)	336
MluNI	TGGCCA	1 cut(s)	482
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	4 cut(s)	64, 185, 484, 541
Mox20I	TGGCCA	1 cut(s)	482
MscI	TGGCCA	1 cut(s)	482
MslI	CAYNNNNRTG	2 cut(s)	389, 421
Msp20I	TGGCCA	1 cut(s)	482
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	2 cut(s)	27, 117
MspR9I	CCNGG	3 cut(s)	88, 118, 488
MvaI	CCWGG	2 cut(s)	88, 488
MvnI	CGCG	1 cut(s)	536
MwoI	GCNNNNNNNGC	3 cut(s)	73, 156, 515
NciI	CCSGG	1 cut(s)	118
NdeII	GATC	3 cut(s)	286, 531, 578
NlaIV	GGNNCC	1 cut(s)	344
NruI	TCGCGA	1 cut(s)	536
OliI	CACNNNNGTG	1 cut(s)	421
PaqCI	CACCTGC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	533
PfoI	TCCNGGA	1 cut(s)	486
PkrI	GCNGC	5 cut(s)	158, 173, 215, 429, 439
Psp124BI	GAGCTC	2 cut(s)	265, 279
Psp6I	CCWGG	2 cut(s)	86, 486
PspGI	CCWGG	2 cut(s)	86, 486
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	1 cut(s)	516
PstNI	CAGNNNCTG	1 cut(s)	359
RruI	TCGCGA	1 cut(s)	536
RseI	CAYNNNNRTG	2 cut(s)	389, 421
SacI	GAGCTC	2 cut(s)	265, 279
SalI	GTCGAC	1 cut(s)	206
SatI	GCNGC	5 cut(s)	157, 172, 214, 428, 438
Sau3AI	GATC	3 cut(s)	286, 531, 578
Sau96I	GGNCC	1 cut(s)	516
ScrFI	CCNGG	3 cut(s)	88, 118, 488
SduI	GDGCHC	4 cut(s)	265, 279, 504, 576
SetI	ASST	6 cut(s)	92, 205, 265, 279, 361, 530
SfaNI	GCATC	3 cut(s)	36, 183, 381
SmiMI	CAYNNNNRTG	2 cut(s)	389, 421
Sse9I	AATT	1 cut(s)	336
SsiI	CCGC	5 cut(s)	171, 213, 216, 427, 440
SspMI	CTAG	3 cut(s)	68, 168, 401
SstI	GAGCTC	2 cut(s)	265, 279
StyD4I	CCNGG	3 cut(s)	86, 116, 486
TaaI	ACNGT	2 cut(s)	331, 423
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	1 cut(s)	207
TaqII	GACCGA	1 cut(s)	483
TasI	AATT	1 cut(s)	336
TauI	GCSGC	3 cut(s)	174, 216, 430
TscAI	CASTG	4 cut(s)	202, 414, 428, 483
TseI	GCWGC	2 cut(s)	156, 437
TspRI	CASTG	4 cut(s)	202, 414, 428, 483
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XmiI	GTMKAC	2 cut(s)	207, 326
XspI	CTAG	3 cut(s)	68, 168, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.