Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003282

Physical Location & Seq

Genomic Coordinates Reverse (-)

36647781 .. 36648969

Gene Structure 1189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG205300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCTCTCTTTTCTGACTTTCGTAAGAGAGGCTTCTCCGAGGCGGTTGGTTTCTACTGGTGGCGGCTCTGCTCCTTTGACAGGGAAATGGGTCCTTGCTCCTCTCTCTCGTCTAATTTGCGGTGGTGGCGACGGGTTTATTCGTCGGTATCCCCTAAATATGGGCTTTGGCCTTTTTCTCATTGCTATAGCTGTTGGATATGATGGTAGTGATAGGTGTGTGGCCGATTGGATTTGGGATCGGAGGTTCTTTGGAATGAGGGCAGGGGTCGTCTCGCCCAGCAGTGGTGGCTGGTTTGGTAGCAAAGCCTACTGGTTTGGCATTCAGCCGTCGTCTAGGGATTTACCATTTAATGGATGTGATGGAGATCCAGGGGTTGATTTAGGACTGGTTTGGCCTGAGATTGGAAGCTATTGTGTTGGGGTGATTACTTTGTCGTCCAACACAGCCAGATTTGATAGAAGTGGGATATTGGGCTCGGTGATGCCAGCGGAACAACGTTGCTCGTGGATGGCTTCGGCGACAAAACTTTTGGCTGGGGTCGTTGGTCGCTTTTGCTTTGGTGGCGGTAACTGCGATAGAGGCAGTGCAAGTGGAGTCGGCGGCGGGTCTTTGGCGGTGATAGAGATGGTGCTCCTAGGGCGAACTGGAGCTCTTGTTGGGGCTGGACTCAGTTGGGGTTGGGCCTGGTGTGCTAGGGTTCCTCGATTTTGGGCCTTGGTAGTGTGGGCCTGGCCCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

26.25

Weight (kDa)

9.06

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003282)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334151 RchiOBHm_Chr6g0275401
rosa_laevigata	RLG00000012330 RLG00000023103 RLG00000023473 RLG00000023476 RLG00000028751 RLG00000029476
rosa_multiflora	Rmu_co8467563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019700 Rroxscaffold_1G00039360 Rroxscaffold_3G00249990 Rroxscaffold_3G00275150 Rroxscaffold_6G00395480 Rroxscaffold_7G00190930
rosa_rugosa	Rorug03G0305200
rosa_samantha	Rh2AG435100 Rh2DG453400 Rh2DG691400 Rh3AG051100 Rh3BG052300 Rh3BG303700 Rh3CG052000 Rh3DG052700 Rh4AG232800 Rh4AG393900 Rh4BG028000 Rh4DG030700 Rh4DG400900 Rh5AG348100 Rh5AG355400 Rh5DG570200 Rh6AG205300 Rh6BG208300 Rh6BG518000 Rh7AG242500 Rh7AG438800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	353
AciI	CCGC	8 cut(s)	43, 63, 120, 491, 567, 603, 606, 617
AclI	AACGTT	1 cut(s)	499
AclWI	GGATC	2 cut(s)	246, 362
AcoI	YGGCCR	1 cut(s)	222
AfiI	CCNNNNNNNGG	5 cut(s)	80, 160, 284, 353, 404
AjnI	CCWGG	3 cut(s)	370, 686, 731
AloI	GAACNNNNNNTCC	2 cut(s)	230, 262
AluBI	AGCT	3 cut(s)	191, 411, 653
AluI	AGCT	3 cut(s)	191, 411, 653
Alw21I	GWGCWC	2 cut(s)	636, 655
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	2 cut(s)	246, 362
AoxI	GGCC	7 cut(s)	169, 222, 395, 684, 714, 729, 734
ArsI	GACNNNNNNTTYG	2 cut(s)	514, 546
AspA2I	CCTAGG	1 cut(s)	637
AspS9I	GGNCC	5 cut(s)	91, 684, 714, 729, 735
AsuHPI	GGTGA	3 cut(s)	436, 493, 631
AvaII	GGWCC	1 cut(s)	91
AvrII	CCTAGG	1 cut(s)	637
BanII	GRGCYC	2 cut(s)	479, 655
BauI	CACGAG	1 cut(s)	505
Bbv12I	GWGCWC	2 cut(s)	636, 655
BccI	CCATC	4 cut(s)	197, 356, 505, 622
BceAI	ACGGC	1 cut(s)	313
BciT130I	CCWGG	3 cut(s)	372, 688, 733
BciVI	GTATCC	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	3 cut(s)	336, 638, 696
BfmI	CTRYAG	1 cut(s)	186
BfuI	GTATCC	1 cut(s)	159
BisI	GCNGC	2 cut(s)	64, 604
BlnI	CCTAGG	1 cut(s)	637
BlsI	GCNGC	2 cut(s)	65, 605
Bme1390I	CCNGG	3 cut(s)	372, 688, 733
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	5 cut(s)	91, 684, 714, 729, 735
BmiI	GGNNCC	2 cut(s)	92, 702
BmrFI	CCNGG	3 cut(s)	372, 688, 733
BmsI	GCATC	1 cut(s)	474
BpmI	CTGGAG	1 cut(s)	669
BsaBI	GATNNNNATC	1 cut(s)	366
BsaJI	CCNNGG	4 cut(s)	38, 371, 637, 717
BsaXI	ACNNNNNCTCC	2 cut(s)	642, 672
Bsc4I	CCNNNNNNNGG	5 cut(s)	80, 160, 284, 353, 404
Bse1I	ACTGG	4 cut(s)	61, 317, 393, 652
Bse3DI	GCAATG	1 cut(s)	180
Bse8I	GATNNNNATC	1 cut(s)	366
BseBI	CCWGG	3 cut(s)	372, 688, 733
BseDI	CCNNGG	4 cut(s)	38, 371, 637, 717
BseGI	GGATG	2 cut(s)	362, 516
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	5 cut(s)	80, 160, 284, 353, 404
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	2 cut(s)	390, 685
BseNI	ACTGG	4 cut(s)	61, 317, 393, 652
BseRI	GAGGAG	1 cut(s)	90
BseYI	CCCAGC	2 cut(s)	278, 536
BshFI	GGCC	7 cut(s)	171, 224, 397, 686, 716, 731, 736
BsiHKAI	GWGCWC	2 cut(s)	636, 655
BslI	CCNNNNNNNGG	5 cut(s)	80, 160, 284, 353, 404
BsmAI	GTCTC	1 cut(s)	277
BsmBI	CGTCTC	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	321
BsnI	GGCC	7 cut(s)	171, 224, 397, 686, 716, 731, 736
Bsp1286I	GDGCHC	3 cut(s)	479, 636, 655
Bsp143I	GATC	2 cut(s)	238, 367
BspACI	CCGC	8 cut(s)	43, 63, 120, 491, 567, 603, 606, 617
BspANI	GGCC	7 cut(s)	171, 224, 397, 686, 716, 731, 736
BspCNI	CTCAG	2 cut(s)	391, 684
BspLI	GGNNCC	2 cut(s)	92, 702
BspPI	GGATC	2 cut(s)	246, 362
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	4 cut(s)	61, 317, 393, 652
BssECI	CCNNGG	4 cut(s)	38, 371, 637, 717
BssMI	GATC	2 cut(s)	238, 367
BssSI	CACGAG	1 cut(s)	505
BssT1I	CCWWGG	2 cut(s)	637, 717
Bst2BI	CACGAG	1 cut(s)	505
Bst2UI	CCWGG	3 cut(s)	372, 688, 733
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	2 cut(s)	399, 671
BstENI	CCTNNNNNAGG	1 cut(s)	78
BstF5I	GGATG	2 cut(s)	362, 516
BstKTI	GATC	2 cut(s)	241, 370
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	2 cut(s)	238, 367
BstMWI	GCNNNNNNNGC	7 cut(s)	126, 288, 564, 573, 582, 640, 692
BstNI	CCWGG	3 cut(s)	372, 688, 733
BstSCI	CCNGG	3 cut(s)	370, 686, 731
BstSFI	CTRYAG	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	7 cut(s)	171, 224, 397, 686, 716, 731, 736
BtsCI	GGATG	2 cut(s)	362, 516
BtsI	GCAGTG	2 cut(s)	289, 592
BtsIMutI	CAGTG	2 cut(s)	289, 592
Cac8I	GCNNGC	1 cut(s)	489
Cfr13I	GGNCC	5 cut(s)	91, 684, 714, 729, 735
DdeI	CTNAG	2 cut(s)	399, 671
DpnI	GATC	2 cut(s)	240, 369
DpnII	GATC	2 cut(s)	238, 367
EaeI	YGGCCR	1 cut(s)	222
Ecl136II	GAGCTC	1 cut(s)	653
Eco130I	CCWWGG	2 cut(s)	637, 717
Eco24I	GRGCYC	2 cut(s)	479, 655
Eco47I	GGWCC	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	653
EcoICRI	GAGCTC	1 cut(s)	653
EcoNI	CCTNNNNNAGG	1 cut(s)	78
EcoO109I	RGGNCCY	1 cut(s)	91
EcoRII	CCWGG	3 cut(s)	370, 686, 731
EcoT14I	CCWWGG	2 cut(s)	637, 717
EcoT38I	GRGCYC	2 cut(s)	479, 655
ErhI	CCWWGG	2 cut(s)	637, 717
Esp3I	CGTCTC	1 cut(s)	277
FaiI	YATR	3 cut(s)	161, 188, 201
FalI	AAGNNNNNCTT	2 cut(s)	16, 48
FauI	CCCGC	1 cut(s)	599
Fnu4HI	GCNGC	2 cut(s)	64, 604
FokI	GGATG	2 cut(s)	369, 523
FriOI	GRGCYC	2 cut(s)	479, 655
Fsp4HI	GCNGC	2 cut(s)	64, 604
FspBI	CTAG	3 cut(s)	336, 638, 696
GluI	GCNGC	2 cut(s)	64, 604
GsaI	CCCAGC	2 cut(s)	282, 540
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	7 cut(s)	171, 224, 397, 686, 716, 731, 736
HinfI	GANTC	2 cut(s)	597, 669
HphI	GGTGA	3 cut(s)	436, 493, 631
Hpy188I	TCNGA	3 cut(s)	15, 39, 243
Hpy99I	CGWCG	3 cut(s)	134, 147, 334
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	1 cut(s)	590
HpyF10VI	GCNNNNNNNGC	7 cut(s)	126, 288, 564, 573, 582, 640, 692
HpyF3I	CTNAG	2 cut(s)	399, 671
HpySE526I	ACGT	1 cut(s)	499
Kzo9I	GATC	2 cut(s)	238, 367
LmnI	GCTCC	4 cut(s)	76, 103, 639, 650
LweI	GCATC	1 cut(s)	474
MaeI	CTAG	3 cut(s)	336, 638, 696
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	1 cut(s)	569
MalI	GATC	2 cut(s)	240, 369
MboI	GATC	2 cut(s)	238, 367
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	3 cut(s)	479, 636, 655
MluCI	AATT	1 cut(s)	114
MlyI	GAGTC	2 cut(s)	606, 663
MmeI	TCCRAC	2 cut(s)	175, 465
MnlI	CCTC	7 cut(s)	22, 33, 111, 237, 252, 575, 714
MseI	TTAA	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	491
MspR9I	CCNGG	3 cut(s)	372, 688, 733
Mva1269I	GAATGC	1 cut(s)	321
MvaI	CCWGG	3 cut(s)	372, 688, 733
MwoI	GCNNNNNNNGC	7 cut(s)	126, 288, 564, 573, 582, 640, 692
NdeII	GATC	2 cut(s)	238, 367
NlaIV	GGNNCC	2 cut(s)	92, 702
PctI	GAATGC	1 cut(s)	321
PflMI	CCANNNNNTGG	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	65, 605
PleI	GAGTC	2 cut(s)	605, 663
PpsI	GAGTC	2 cut(s)	605, 663
PpuMI	RGGWCCY	1 cut(s)	91
Psp124BI	GAGCTC	1 cut(s)	655
Psp1406I	AACGTT	1 cut(s)	499
Psp5II	RGGWCCY	1 cut(s)	91
Psp6I	CCWGG	3 cut(s)	370, 686, 731
PspFI	CCCAGC	2 cut(s)	278, 536
PspGI	CCWGG	3 cut(s)	370, 686, 731
PspN4I	GGNNCC	2 cut(s)	92, 702
PspPI	GGNCC	5 cut(s)	91, 684, 714, 729, 735
PspPPI	RGGWCCY	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	367
SacI	GAGCTC	1 cut(s)	655
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	2 cut(s)	64, 604
Sau3AI	GATC	2 cut(s)	238, 367
Sau96I	GGNCC	5 cut(s)	91, 684, 714, 729, 735
SchI	GAGTC	2 cut(s)	606, 663
ScrFI	CCNGG	3 cut(s)	372, 688, 733
SduI	GDGCHC	3 cut(s)	479, 636, 655
SetI	ASST	6 cut(s)	193, 218, 248, 413, 502, 655
SfaNI	GCATC	1 cut(s)	474
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	91
Sse9I	AATT	1 cut(s)	114
SsiI	CCGC	8 cut(s)	43, 63, 120, 491, 567, 603, 606, 617
SspMI	CTAG	3 cut(s)	336, 638, 696
SstI	GAGCTC	1 cut(s)	655
StyD4I	CCNGG	3 cut(s)	370, 686, 731
StyI	CCWWGG	2 cut(s)	637, 717
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	1 cut(s)	706
TasI	AATT	1 cut(s)	114
TauI	GCSGC	2 cut(s)	66, 606
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	2 cut(s)	289, 592
TspRI	CASTG	2 cut(s)	289, 592
Van91I	CCANNNNNTGG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	91
XagI	CCTNNNNNAGG	1 cut(s)	78
XmaJI	CCTAGG	1 cut(s)	637
XspI	CTAG	3 cut(s)	336, 638, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.