Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003282

Physical Location & Seq

Genomic Coordinates Reverse (-)

65669226 .. 65670472

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG453400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCCAACGGAGCAACTTTGCTCGAGGACGACTTTCGCATCTCAACTTTTGGTCGTGGTCGTGGGTCGCTTCTGCTTTGGTGGTGGTAAAGGTGGTGTGGCCACCGGCGGCACATCTGACGACGATAGAGGTAGTGCAGTTGGTGTCGGCAGCAGGTCTTTGGCGGCGACAGAGATGGTGCTCCTAGGGCCAACTGGAGCTCTTGTTGGGGCTAGACCTAGTTGGGCTTGGGCCTGGTGTGCTAGGGTTTCTCGATTTTGGACCTTAGTAGTGTGGGCCTGGTCTGATTGGTTTCATAGAACTGTTAGTTCTTTATTTTTTAAGATAGGTTTGGGCTCGCATCTTTTCTCACGAAAAGATGATGGGCTTTATTTTTTCTTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

13.94

Weight (kDa)

9.41

Isoelectric Point (pI)

23.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003282)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334151 RchiOBHm_Chr6g0275401
rosa_laevigata	RLG00000012330 RLG00000023103 RLG00000023473 RLG00000023476 RLG00000028751 RLG00000029476
rosa_multiflora	Rmu_co8467563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019700 Rroxscaffold_1G00039360 Rroxscaffold_3G00249990 Rroxscaffold_3G00275150 Rroxscaffold_6G00395480 Rroxscaffold_7G00190930
rosa_rugosa	Rorug03G0305200
rosa_samantha	Rh2AG435100 Rh2DG453400 Rh2DG691400 Rh3AG051100 Rh3BG052300 Rh3BG303700 Rh3CG052000 Rh3DG052700 Rh4AG232800 Rh4AG393900 Rh4BG028000 Rh4DG030700 Rh4DG400900 Rh5AG348100 Rh5AG355400 Rh5DG570200 Rh6AG205300 Rh6BG208300 Rh6BG518000 Rh7AG242500 Rh7AG438800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	144
AciI	CCGC	2 cut(s)	108, 164
AcoI	YGGCCR	1 cut(s)	99
AjnI	CCWGG	2 cut(s)	233, 278
AluBI	AGCT	1 cut(s)	200
AluI	AGCT	1 cut(s)	200
Alw21I	GWGCWC	2 cut(s)	183, 202
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	4 cut(s)	99, 188, 231, 276
ApeKI	GCWGC	1 cut(s)	150
AspA2I	CCTAGG	1 cut(s)	184
AspS9I	GGNCC	4 cut(s)	188, 231, 261, 276
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	261
AvrII	CCTAGG	1 cut(s)	184
BalI	TGGCCA	1 cut(s)	101
BanII	GRGCYC	2 cut(s)	202, 338
Bbv12I	GWGCWC	2 cut(s)	183, 202
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	2 cut(s)	169, 356
BciT130I	CCWGG	2 cut(s)	235, 280
BfaI	CTAG	4 cut(s)	185, 213, 219, 243
BfuAI	ACCTGC	1 cut(s)	144
BisI	GCNGC	3 cut(s)	109, 151, 165
BlnI	CCTAGG	1 cut(s)	184
BlsI	GCNGC	3 cut(s)	110, 152, 166
Bme1390I	CCNGG	2 cut(s)	235, 280
Bme18I	GGWCC	1 cut(s)	261
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	4 cut(s)	188, 231, 261, 276
BmrFI	CCNGG	2 cut(s)	235, 280
BmsI	GCATC	2 cut(s)	47, 349
BpmI	CTGGAG	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	235, 280
BseDI	CCNNGG	1 cut(s)	184
BseNI	ACTGG	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	162
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	4 cut(s)	101, 190, 233, 278
BsiHKAI	GWGCWC	2 cut(s)	183, 202
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	105
BsnI	GGCC	4 cut(s)	101, 190, 233, 278
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	3 cut(s)	183, 202, 338
BspACI	CCGC	2 cut(s)	108, 164
BspANI	GGCC	4 cut(s)	101, 190, 233, 278
BspMI	ACCTGC	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	199
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	184
Bst2UI	CCWGG	2 cut(s)	235, 280
Bst4CI	ACNGT	1 cut(s)	304
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	1 cut(s)	265
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 187, 239
BstNI	CCWGG	2 cut(s)	235, 280
BstSCI	CCNGG	2 cut(s)	233, 278
BstV1I	GCAGC	1 cut(s)	162
BsuRI	GGCC	4 cut(s)	101, 190, 233, 278
BveI	ACCTGC	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	338
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	4 cut(s)	188, 231, 261, 276
CviJI	RGCY	9 cut(s)	101, 190, 200, 212, 227, 233, 278, 336, 367
CviKI_1	RGCY	9 cut(s)	101, 190, 200, 212, 227, 233, 278, 336, 367
DdeI	CTNAG	1 cut(s)	265
EaeI	YGGCCR	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	184
Eco24I	GRGCYC	2 cut(s)	202, 338
Eco47I	GGWCC	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	200
Eco88I	CYCGRG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	200
EcoRII	CCWGG	2 cut(s)	233, 278
EcoT14I	CCWWGG	1 cut(s)	184
EcoT38I	GRGCYC	2 cut(s)	202, 338
ErhI	CCWWGG	1 cut(s)	184
FaiI	YATR	1 cut(s)	297
Fnu4HI	GCNGC	3 cut(s)	109, 151, 165
FriOI	GRGCYC	2 cut(s)	202, 338
Fsp4HI	GCNGC	3 cut(s)	109, 151, 165
FspBI	CTAG	4 cut(s)	185, 213, 219, 243
GluI	GCNGC	3 cut(s)	109, 151, 165
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	4 cut(s)	101, 190, 233, 278
HapII	CCGG	1 cut(s)	105
HpaII	CCGG	1 cut(s)	105
Hpy188I	TCNGA	2 cut(s)	118, 286
Hpy188III	TCNNGA	2 cut(s)	252, 351
Hpy99I	CGWCG	1 cut(s)	125
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4V	TGCA	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 187, 239
HpyF3I	CTNAG	1 cut(s)	265
LmnI	GCTCC	3 cut(s)	10, 186, 197
LpnPI	CCDG	7 cut(s)	118, 139, 180, 220, 247, 265, 292
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	2 cut(s)	47, 349
MaeI	CTAG	4 cut(s)	185, 213, 219, 243
MhlI	GDGCHC	3 cut(s)	183, 202, 338
MlsI	TGGCCA	1 cut(s)	101
MluNI	TGGCCA	1 cut(s)	101
MnlI	CCTC	2 cut(s)	18, 122
Mox20I	TGGCCA	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	101
MseI	TTAA	1 cut(s)	321
Msp20I	TGGCCA	1 cut(s)	101
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	2 cut(s)	235, 280
MvaI	CCWGG	2 cut(s)	235, 280
MwoI	GCNNNNNNNGC	3 cut(s)	10, 187, 239
PaeR7I	CTCGAG	1 cut(s)	22
PkrI	GCNGC	3 cut(s)	110, 152, 166
Psp124BI	GAGCTC	1 cut(s)	202
Psp6I	CCWGG	2 cut(s)	233, 278
PspGI	CCWGG	2 cut(s)	233, 278
PspPI	GGNCC	4 cut(s)	188, 231, 261, 276
PspXI	VCTCGAGB	1 cut(s)	22
SacI	GAGCTC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	3 cut(s)	109, 151, 165
Sau96I	GGNCC	4 cut(s)	188, 231, 261, 276
ScrFI	CCNGG	2 cut(s)	235, 280
SduI	GDGCHC	3 cut(s)	183, 202, 338
SetI	ASST	7 cut(s)	94, 133, 158, 202, 220, 266, 331
SfaNI	GCATC	2 cut(s)	47, 349
Sfr274I	CTCGAG	1 cut(s)	22
SgrAI	CRCCGGYG	1 cut(s)	104
SinI	GGWCC	1 cut(s)	261
SlaI	CTCGAG	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
SsiI	CCGC	2 cut(s)	108, 164
SspMI	CTAG	4 cut(s)	185, 213, 219, 243
SstI	GAGCTC	1 cut(s)	202
StyD4I	CCNGG	2 cut(s)	233, 278
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	304
TaqI	TCGA	2 cut(s)	23, 253
TauI	GCSGC	2 cut(s)	111, 167
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TseI	GCWGC	1 cut(s)	150
TspDTI	ATGAA	1 cut(s)	284
TspGWI	ACGGA	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	261
XhoI	CTCGAG	1 cut(s)	22
XmaJI	CCTAGG	1 cut(s)	184
XspI	CTAG	4 cut(s)	185, 213, 219, 243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.