Rh5AG355400

DNA topoisomerase 2-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003282
Physical Location & Seq
Reverse (-)
58842423 .. 58843397
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG355400.1

Sequence Viewer

Length: 432 bp
ATGTCGTGGAAGCTAGTCCCATCGGAGATTTTTGACACGCTTCACGACGCGCTCAAGCTCAATGGCACCAATGTCGTCTTCTGCTCCGGCCCTGAAGACTTCCACGTCATCGCTGCCTCTGATCACGAAATGTACTTGCCTCTAGTTTCAAGGCAGAAGAAAGTTGTAGTTGTATTTCGGCCTGTTGTGCACAGATCCCTGCGGAATGTGCAGTCAAGTGATGGCCACGACGTGGGGAGGCTGCGTCCAGATGCAGGGAGAAGACCACAACAGCTGCGCGTTGCGGCGATGCACGTTAACGACGCTGGCGTTGATCGGAAGATAGTGGCGGCGCTGGTGGAGCAAGGCACCAGTGTTGGGTGCCCTCAGTTGTTTGTGTGTCCAGATCAATTTGGAATTCCAATTCAGTATGGGTGTCCAACCAATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000076 GO:0000785 GO:0001932 GO:0001934 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006275 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009893 GO:0009987 GO:0010556 GO:0010562 GO:0010604 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0022402 GO:0022607 GO:0030174 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031570 GO:0032268 GO:0032270 GO:0033036 GO:0033135 GO:0033138 GO:0033260 GO:0033365 GO:0033554 GO:0033674 GO:0034502 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0035561 GO:0035563 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044786 GO:0045786 GO:0045859 GO:0045860 GO:0045937 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051098 GO:0051099 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051641 GO:0051716 GO:0051726 GO:0060255 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070727 GO:0071163 GO:0071165 GO:0071168 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRCT BRCT_2 PTCB-BRCT

Protein Analysis

143

Amino Acids

15.82

Weight (kDa)

7.75

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
AccB1I GGYRCC 3 cut(s) 65, 347, 360
AccB7I CCANNNNNTGG 1 cut(s) 232
AccII CGCG 2 cut(s) 50, 279
AciI CCGC 3 cut(s) 202, 284, 329
AclWI GGATC 1 cut(s) 189
AcoI YGGCCR 1 cut(s) 223
AcsI RAATTY 1 cut(s) 396
AcuI CTGAAG 1 cut(s) 114
AdeI CACNNNGTG 1 cut(s) 232
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 3 cut(s) 232, 254, 357
AgsI TTSAA 1 cut(s) 150
AjiI CACGTC 2 cut(s) 106, 232
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AluBI AGCT 3 cut(s) 13, 58, 274
AluI AGCT 3 cut(s) 13, 58, 274
Alw21I GWGCWC 1 cut(s) 192
Alw44I GTGCAC 1 cut(s) 188
AlwI GGATC 1 cut(s) 189
AoxI GGCC 3 cut(s) 88, 179, 223
ApaLI GTGCAC 1 cut(s) 188
ApeKI GCWGC 3 cut(s) 113, 241, 274
ApoI RAATTY 1 cut(s) 396
AspLEI GCGC 3 cut(s) 52, 279, 334
AspS9I GGNCC 1 cut(s) 89
BaeGI GKGCMC 2 cut(s) 192, 365
BalI TGGCCA 1 cut(s) 225
BanI GGYRCC 3 cut(s) 65, 347, 360
BbsI GAAGAC 3 cut(s) 70, 102, 268
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 3 cut(s) 100, 228, 261
BccI CCATC 2 cut(s) 28, 215
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BclI TGATCA 1 cut(s) 121
BfaI CTAG 3 cut(s) 14, 143, 430
BfoI RGCGCY 1 cut(s) 335
BisI GCNGC 5 cut(s) 114, 242, 275, 285, 330
BlsI GCNGC 5 cut(s) 115, 243, 276, 286, 331
BmgBI CACGTC 2 cut(s) 106, 232
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 3 cut(s) 67, 349, 362
BmsI GCATC 2 cut(s) 241, 279
BpiI GAAGAC 3 cut(s) 70, 102, 268
BpuEI CTTGAG 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 254, 357
Bse1I ACTGG 1 cut(s) 351
BseLI CCNNNNNNNGG 3 cut(s) 232, 254, 357
BseMII CTCAG 1 cut(s) 380
BseNI ACTGG 1 cut(s) 351
BseSI GKGCMC 2 cut(s) 192, 365
BseXI GCAGC 3 cut(s) 100, 228, 261
BsgI GTGCAG 1 cut(s) 230
Bsh1236I CGCG 2 cut(s) 50, 279
BshFI GGCC 3 cut(s) 90, 181, 225
BshNI GGYRCC 3 cut(s) 65, 347, 360
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 1 cut(s) 87
BslFI GGGAC 1 cut(s) 2
BslI CCNNNNNNNGG 3 cut(s) 232, 254, 357
BsmFI GGGAC 1 cut(s) 2
BsnI GGCC 3 cut(s) 90, 181, 225
Bsp1286I GDGCHC 2 cut(s) 192, 365
Bsp143I GATC 4 cut(s) 121, 194, 313, 385
BspACI CCGC 3 cut(s) 202, 284, 329
BspANI GGCC 3 cut(s) 90, 181, 225
BspCNI CTCAG 1 cut(s) 379
BspFNI CGCG 2 cut(s) 50, 279
BspLI GGNNCC 3 cut(s) 67, 349, 362
BspPI GGATC 1 cut(s) 189
BspT107I GGYRCC 3 cut(s) 65, 347, 360
BsrI ACTGG 1 cut(s) 351
BssMI GATC 4 cut(s) 121, 194, 313, 385
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 366
BstFNI CGCG 2 cut(s) 50, 279
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 3 cut(s) 52, 279, 334
BstKTI GATC 4 cut(s) 124, 197, 316, 388
BstMBI GATC 4 cut(s) 121, 194, 313, 385
BstMWI GCNNNNNNNGC 3 cut(s) 187, 208, 340
BstSLI GKGCMC 2 cut(s) 192, 365
BstUI CGCG 2 cut(s) 50, 279
BstV1I GCAGC 3 cut(s) 100, 228, 261
BstV2I GAAGAC 3 cut(s) 70, 102, 268
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
BsuRI GGCC 3 cut(s) 90, 181, 225
BtgZI GCGATG 2 cut(s) 94, 302
BtrI CACGTC 2 cut(s) 106, 232
BtsIMutI CAGTG 1 cut(s) 358
Cac8I GCNNGC 1 cut(s) 307
CfoI GCGC 3 cut(s) 52, 279, 334
Cfr13I GGNCC 1 cut(s) 89
CseI GACGC 3 cut(s) 56, 233, 311
Csp6I GTAC 1 cut(s) 133
CviJI RGCY 7 cut(s) 13, 58, 90, 181, 225, 241, 274
CviKI_1 RGCY 7 cut(s) 13, 58, 90, 181, 225, 241, 274
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 1 cut(s) 366
DpnI GATC 4 cut(s) 123, 196, 315, 387
DpnII GATC 4 cut(s) 121, 194, 313, 385
DraIII CACNNNGTG 1 cut(s) 232
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
EaeI YGGCCR 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 114
EcoRI GAATTC 1 cut(s) 396
FaiI YATR 1 cut(s) 411
FaqI GGGAC 1 cut(s) 2
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 5 cut(s) 114, 242, 275, 285, 330
Fsp4HI GCNGC 5 cut(s) 114, 242, 275, 285, 330
FspBI CTAG 3 cut(s) 14, 143, 430
GlaI GCGC 3 cut(s) 51, 278, 333
GluI GCNGC 5 cut(s) 114, 242, 275, 285, 330
HaeII RGCGCY 1 cut(s) 335
HaeIII GGCC 3 cut(s) 90, 181, 225
HapII CCGG 1 cut(s) 87
HgaI GACGC 3 cut(s) 56, 233, 311
HhaI GCGC 3 cut(s) 52, 279, 334
Hin6I GCGC 3 cut(s) 50, 277, 332
HinP1I GCGC 3 cut(s) 50, 277, 332
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HpaI GTTAAC 1 cut(s) 298
HpaII CCGG 1 cut(s) 87
Hpy166II GTNNAC 2 cut(s) 190, 298
Hpy188I TCNGA 3 cut(s) 25, 121, 318
Hpy188III TCNNGA 4 cut(s) 44, 125, 248, 383
Hpy8I GTNNAC 2 cut(s) 190, 298
Hpy99I CGWCG 3 cut(s) 50, 233, 305
HpyCH4IV ACGT 3 cut(s) 105, 231, 294
HpyCH4V TGCA 4 cut(s) 190, 211, 254, 292
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 208, 340
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 3 cut(s) 105, 231, 294
HspAI GCGC 3 cut(s) 50, 277, 332
Ksp22I TGATCA 1 cut(s) 121
KspAI GTTAAC 1 cut(s) 298
Kzo9I GATC 4 cut(s) 121, 194, 313, 385
LmnI GCTCC 2 cut(s) 89, 340
Lsp1109I GCAGC 3 cut(s) 100, 228, 261
LweI GCATC 2 cut(s) 241, 279
MaeI CTAG 3 cut(s) 14, 143, 430
MaeII ACGT 3 cut(s) 105, 231, 294
MalI GATC 4 cut(s) 123, 196, 315, 387
MboI GATC 4 cut(s) 121, 194, 313, 385
MboII GAAGA 5 cut(s) 70, 107, 169, 273, 331
MflI RGATCY 1 cut(s) 194
MhlI GDGCHC 2 cut(s) 192, 365
MlsI TGGCCA 1 cut(s) 225
MluCI AATT 4 cut(s) 389, 396, 402, 424
MluNI TGGCCA 1 cut(s) 225
MnlI CCTC 4 cut(s) 127, 150, 231, 375
Mox20I TGGCCA 1 cut(s) 225
MscI TGGCCA 1 cut(s) 225
MseI TTAA 1 cut(s) 297
Msp20I TGGCCA 1 cut(s) 225
MspA1I CMGCKG 1 cut(s) 274
MspI CCGG 1 cut(s) 87
MvnI CGCG 2 cut(s) 50, 279
MwoI GCNNNNNNNGC 3 cut(s) 187, 208, 340
NdeII GATC 4 cut(s) 121, 194, 313, 385
NlaIV GGNNCC 3 cut(s) 67, 349, 362
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PflMI CCANNNNNTGG 1 cut(s) 232
PkrI GCNGC 5 cut(s) 115, 243, 276, 286, 331
PspN4I GGNNCC 3 cut(s) 67, 349, 362
PspPI GGNCC 1 cut(s) 89
PsuI RGATCY 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 274
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 5 cut(s) 114, 242, 275, 285, 330
Sau3AI GATC 4 cut(s) 121, 194, 313, 385
Sau96I GGNCC 1 cut(s) 89
SduI GDGCHC 2 cut(s) 192, 365
SetI ASST 6 cut(s) 15, 60, 108, 234, 276, 297
SfaNI GCATC 2 cut(s) 241, 279
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 4 cut(s) 389, 396, 402, 424
SsiI CCGC 3 cut(s) 202, 284, 329
SspMI CTAG 3 cut(s) 14, 143, 430
TaiI ACGT 3 cut(s) 108, 234, 297
TasI AATT 4 cut(s) 389, 396, 402, 424
TatI WGTACW 1 cut(s) 132
TauI GCSGC 2 cut(s) 287, 332
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 1 cut(s) 358
TseI GCWGC 3 cut(s) 113, 241, 274
TspRI CASTG 1 cut(s) 358
Van91I CCANNNNNTGG 1 cut(s) 232
VneI GTGCAC 1 cut(s) 188
XapI RAATTY 1 cut(s) 396
XspI CTAG 3 cut(s) 14, 143, 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.