Rh6BG518000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003282
Physical Location & Seq
Reverse (-)
71170314 .. 71171314
1001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG518000.1

Sequence Viewer

Length: 921 bp
ATGCTATGCCCTAGCCGCCGCTTGCTAGGGTTCCCATGGCGCTCCCTTGTGCCAATCGGACAGCTAAGCGGTTCTGCCTCTGTGCCTAGAGATGGGAAAGAGGTAGGCTGCCCCAATGACATCGAAAACCGGCCTATACAGGCGATGGCCGGGCGCCGATCTCCAAAGAACCCAACTGTTATGCGTCTGATAACAGGTGTTGTGCAATACAAAGGGGGGACTACAGACTTGTACTCCAACTTGGTAACAGCCCGCCGAGGATGGCTGAAAGAGTCCGACAACAGGCATGCAGGGTTGAAAGAGATCGGCTATTGTCGGTCGGTGGACGAGACGACGGATCGCTCCTATTCCTGGAACAAGGCGGTGGCGATCTCCTTGCAAAAGCAACTTCGACTGCTTTGGCTCTCAGGCGTGGCGGCAGGCCGACTTCAACTTGCACAAGAGATGGGGTTCGCATTCCGTACTGAGGCAGCCAGATTCCTGAAGACCCGGGTTGCTGGCGCGGCGTGGCACACAAGTGACGGTGGGGGCACCAAACCATCAAGGAGATCTTTGTCGTGTTGGACTGAGGCGTCAAGGAGAGATGAAAAGCTTCGCTTGGGTGCTACCTGTGGTGAAGAAAGAAGAGGCCAGCCTGCGATCTGTAGCTCTGGTGCCGAGCGACTGTGCGTATCGCTGGAGGAATACGACGGCGGGGGGTGTAAGGCTAGTGGCGTCGATGTTTGCTGGTTCGGCAGATCAGATTTCTCCTCCCACCTTGTCGTTAATCTGGTTCCGACCAGCTTCAACGTTCCATGGTGTCGGCTGGGGAGTCCTCATGGTGCAACTAACCCTGTGGCTGCACCTGAAGTTTTTCGATATGGTGGTCATCACAACGACCGGTGGCGGGGCAGTCCGTGGCATGGGGCTACTGGGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

33.48

Weight (kDa)

9.69

Isoelectric Point (pI)

59.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 571
AccB1I GGYRCC 3 cut(s) 153, 530, 653
AccII CGCG 1 cut(s) 503
AciI CCGC 9 cut(s) 16, 19, 69, 253, 362, 416, 503, 693, 886
AclI AACGTT 1 cut(s) 789
AclWI GGATC 1 cut(s) 345
AcoI YGGCCR 1 cut(s) 147
AcuI CTGAAG 2 cut(s) 503, 867
AcyI GRCGYC 3 cut(s) 154, 572, 714
AfaI GTAC 2 cut(s) 233, 463
AfiI CCNNNNNNNGG 6 cut(s) 92, 282, 351, 466, 886, 902
AgeI ACCGGT 1 cut(s) 879
AgsI TTSAA 3 cut(s) 298, 431, 787
AjnI CCWGG 1 cut(s) 350
AleI CACNNNNGTG 1 cut(s) 516
AluBI AGCT 4 cut(s) 64, 592, 648, 783
AluI AGCT 4 cut(s) 64, 592, 648, 783
Alw26I GTCTC 1 cut(s) 323
AlwI GGATC 1 cut(s) 345
Ama87I CYCGRG 1 cut(s) 489
AoxI GGCC 4 cut(s) 131, 147, 421, 628
ApeKI GCWGC 3 cut(s) 108, 470, 839
AsiGI ACCGGT 1 cut(s) 879
Asp700I GAANNNNTTC 2 cut(s) 591, 852
AspLEI GCGC 3 cut(s) 42, 156, 503
AsuC2I CCSGG 3 cut(s) 151, 490, 491
AsuHPI GGTGA 1 cut(s) 626
AvaI CYCGRG 1 cut(s) 489
BaeGI GKGCMC 1 cut(s) 533
BanI GGYRCC 3 cut(s) 153, 530, 653
BbsI GAAGAC 1 cut(s) 491
BbvI GCAGC 3 cut(s) 95, 482, 826
BccI CCATC 5 cut(s) 86, 139, 255, 439, 547
BceAI ACGGC 1 cut(s) 706
BcgI CGANNNNNNTGC 2 cut(s) 358, 392
BciT130I CCWGG 1 cut(s) 352
BcnI CCSGG 3 cut(s) 151, 490, 491
BcoDI GTCTC 1 cut(s) 323
BfaI CTAG 4 cut(s) 12, 26, 87, 708
BfmI CTRYAG 2 cut(s) 222, 643
BfoI RGCGCY 2 cut(s) 43, 157
BglII AGATCT 1 cut(s) 548
BisI GCNGC 7 cut(s) 16, 19, 109, 417, 471, 504, 840
BlpI GCTNAGC 1 cut(s) 65
BlsI GCNGC 7 cut(s) 17, 20, 110, 418, 472, 505, 841
Bme1390I CCNGG 4 cut(s) 151, 352, 490, 491
BmeT110I CYCGRG 1 cut(s) 489
BmiI GGNNCC 5 cut(s) 32, 155, 532, 655, 774
BmrFI CCNGG 4 cut(s) 151, 352, 490, 491
BmrI ACTGGG 1 cut(s) 921
BmuI ACTGGG 1 cut(s) 921
BpiI GAAGAC 1 cut(s) 491
BpmI CTGGAG 1 cut(s) 698
Bpu1102I GCTNAGC 1 cut(s) 65
BpuMI CCSGG 3 cut(s) 151, 490, 491
BsaHI GRCGYC 3 cut(s) 154, 572, 714
BsaJI CCNNGG 5 cut(s) 35, 256, 489, 794, 896
BsaWI WCCGGW 1 cut(s) 879
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 6 cut(s) 92, 282, 351, 466, 886, 902
Bse118I RCCGGY 2 cut(s) 129, 879
Bse1I ACTGG 1 cut(s) 916
BseBI CCWGG 1 cut(s) 352
BseDI CCNNGG 5 cut(s) 35, 256, 489, 794, 896
BseGI GGATG 1 cut(s) 266
BseLI CCNNNNNNNGG 6 cut(s) 92, 282, 351, 466, 886, 902
BseMII CTCAG 3 cut(s) 420, 456, 558
BseNI ACTGG 1 cut(s) 916
BseRI GAGGAG 1 cut(s) 739
BseSI GKGCMC 1 cut(s) 533
BseXI GCAGC 3 cut(s) 95, 482, 826
BseYI CCCAGC 1 cut(s) 805
BsgI GTGCAG 1 cut(s) 825
Bsh1236I CGCG 1 cut(s) 503
Bsh1285I CGRYCG 2 cut(s) 320, 880
BshFI GGCC 4 cut(s) 133, 149, 423, 630
BshNI GGYRCC 3 cut(s) 153, 530, 653
BshTI ACCGGT 1 cut(s) 879
BsiEI CGRYCG 2 cut(s) 320, 880
BsiHKCI CYCGRG 1 cut(s) 489
BsiSI CCGG 4 cut(s) 130, 150, 490, 880
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 6 cut(s) 92, 282, 351, 466, 886, 902
BsmAI GTCTC 1 cut(s) 323
BsmBI CGTCTC 1 cut(s) 323
BsmFI GGGAC 1 cut(s) 232
BsmI GAATGC 1 cut(s) 455
BsnI GGCC 4 cut(s) 133, 149, 423, 630
BsoBI CYCGRG 1 cut(s) 489
Bsp1286I GDGCHC 1 cut(s) 533
Bsp143I GATC 7 cut(s) 158, 303, 337, 369, 548, 639, 737
Bsp1720I GCTNAGC 1 cut(s) 65
Bsp19I CCATGG 2 cut(s) 35, 794
BspACI CCGC 9 cut(s) 16, 19, 69, 253, 362, 416, 503, 693, 886
BspANI GGCC 4 cut(s) 133, 149, 423, 630
BspCNI CTCAG 3 cut(s) 419, 457, 559
BspFNI CGCG 1 cut(s) 503
BspHI TCATGA 1 cut(s) 917
BspLI GGNNCC 5 cut(s) 32, 155, 532, 655, 774
BspPI GGATC 1 cut(s) 345
BspT107I GGYRCC 3 cut(s) 153, 530, 653
BsrFI RCCGGY 2 cut(s) 129, 879
BsrI ACTGG 1 cut(s) 916
BssAI RCCGGY 2 cut(s) 129, 879
BssECI CCNNGG 5 cut(s) 35, 256, 489, 794, 896
BssMI GATC 7 cut(s) 158, 303, 337, 369, 548, 639, 737
BssNI GRCGYC 3 cut(s) 154, 572, 714
BssT1I CCWWGG 2 cut(s) 35, 794
Bst2UI CCWGG 1 cut(s) 352
Bst4CI ACNGT 3 cut(s) 178, 524, 666
Bst6I CTCTTC 1 cut(s) 619
BstACI GRCGYC 3 cut(s) 154, 572, 714
BstC8I GCNNGC 7 cut(s) 23, 253, 288, 421, 499, 632, 636
BstDEI CTNAG 4 cut(s) 65, 406, 465, 567
BstDSI CCRYGG 3 cut(s) 35, 794, 896
BstF5I GGATG 1 cut(s) 266
BstFNI CGCG 1 cut(s) 503
BstH2I RGCGCY 2 cut(s) 43, 157
BstHHI GCGC 3 cut(s) 42, 156, 503
BstKTI GATC 7 cut(s) 161, 306, 340, 372, 551, 642, 740
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 7 cut(s) 158, 303, 337, 369, 548, 639, 737
BstMCI CGRYCG 2 cut(s) 320, 880
BstMWI GCNNNNNNNGC 3 cut(s) 15, 503, 732
BstNI CCWGG 1 cut(s) 352
BstNSI RCATGY 1 cut(s) 290
BstSCI CCNGG 4 cut(s) 149, 350, 488, 489
BstSFI CTRYAG 2 cut(s) 222, 643
BstSLI GKGCMC 1 cut(s) 533
BstUI CGCG 1 cut(s) 503
BstV1I GCAGC 3 cut(s) 95, 482, 826
BstV2I GAAGAC 1 cut(s) 491
BstX2I RGATCY 1 cut(s) 548
BstYI RGATCY 1 cut(s) 548
BsuRI GGCC 4 cut(s) 133, 149, 423, 630
BtgI CCRYGG 3 cut(s) 35, 794, 896
BtgZI GCGATG 1 cut(s) 158
BtsCI GGATG 1 cut(s) 266
Cac8I GCNNGC 7 cut(s) 23, 253, 288, 421, 499, 632, 636
CciI TCATGA 1 cut(s) 917
CfoI GCGC 3 cut(s) 42, 156, 503
Cfr10I RCCGGY 2 cut(s) 129, 879
Cfr9I CCCGGG 1 cut(s) 489
CseI GACGC 3 cut(s) 173, 561, 703
Csp6I GTAC 2 cut(s) 232, 462
CspAI ACCGGT 1 cut(s) 879
CviAII CATG 6 cut(s) 36, 287, 795, 818, 902, 918
CviQI GTAC 2 cut(s) 232, 462
DdeI CTNAG 4 cut(s) 65, 406, 465, 567
DinI GGCGCC 1 cut(s) 155
DpnI GATC 7 cut(s) 160, 305, 339, 371, 550, 641, 739
DpnII GATC 7 cut(s) 158, 303, 337, 369, 548, 639, 737
DrdI GACNNNNNNGTC 1 cut(s) 571
DseDI GACNNNNNNGTC 1 cut(s) 571
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 619
EarI CTCTTC 1 cut(s) 619
Eco130I CCWWGG 2 cut(s) 35, 794
Eco57I CTGAAG 2 cut(s) 503, 867
Eco88I CYCGRG 1 cut(s) 489
EcoRII CCWGG 1 cut(s) 350
EcoT14I CCWWGG 2 cut(s) 35, 794
EgeI GGCGCC 1 cut(s) 155
EheI GGCGCC 1 cut(s) 155
ErhI CCWWGG 2 cut(s) 35, 794
Esp3I CGTCTC 1 cut(s) 323
FaeI CATG 6 cut(s) 39, 290, 798, 821, 905, 921
FalI AAGNNNNNCTT 4 cut(s) 535, 567, 581, 613
FaqI GGGAC 1 cut(s) 232
FatI CATG 6 cut(s) 35, 286, 794, 817, 901, 917
FauI CCCGC 3 cut(s) 260, 686, 879
Fnu4HI GCNGC 7 cut(s) 16, 19, 109, 417, 471, 504, 840
FokI GGATG 1 cut(s) 273
Fsp4HI GCNGC 7 cut(s) 16, 19, 109, 417, 471, 504, 840
FspBI CTAG 4 cut(s) 12, 26, 87, 708
GlaI GCGC 3 cut(s) 41, 155, 502
GluI GCNGC 7 cut(s) 16, 19, 109, 417, 471, 504, 840
GsaI CCCAGC 1 cut(s) 809
GsuI CTGGAG 1 cut(s) 698
HaeII RGCGCY 2 cut(s) 43, 157
HaeIII GGCC 4 cut(s) 133, 149, 423, 630
HapII CCGG 4 cut(s) 130, 150, 490, 880
HgaI GACGC 3 cut(s) 173, 561, 703
HhaI GCGC 3 cut(s) 42, 156, 503
Hin1I GRCGYC 3 cut(s) 154, 572, 714
Hin1II CATG 6 cut(s) 39, 290, 798, 821, 905, 921
Hin6I GCGC 3 cut(s) 40, 154, 501
HinP1I GCGC 3 cut(s) 40, 154, 501
HindIII AAGCTT 1 cut(s) 590
HinfI GANTC 3 cut(s) 272, 477, 811
HpaII CCGG 4 cut(s) 130, 150, 490, 880
HphI GGTGA 1 cut(s) 626
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 5 cut(s) 59, 189, 277, 742, 777
Hpy188III TCNNGA 2 cut(s) 481, 918
Hpy8I GTNNAC 1 cut(s) 325
Hpy99I CGWCG 3 cut(s) 337, 692, 719
HpyCH4III ACNGT 3 cut(s) 178, 524, 666
HpyCH4IV ACGT 1 cut(s) 789
HpyCH4V TGCA 6 cut(s) 205, 290, 379, 437, 824, 842
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 503, 732
HpyF3I CTNAG 4 cut(s) 65, 406, 465, 567
HpySE526I ACGT 1 cut(s) 789
Hsp92I GRCGYC 3 cut(s) 154, 572, 714
Hsp92II CATG 6 cut(s) 39, 290, 798, 821, 905, 921
HspAI GCGC 3 cut(s) 40, 154, 501
KasI GGCGCC 1 cut(s) 153
Kzo9I GATC 7 cut(s) 158, 303, 337, 369, 548, 639, 737
LmnI GCTCC 2 cut(s) 47, 347
Lsp1109I GCAGC 3 cut(s) 95, 482, 826
MaeI CTAG 4 cut(s) 12, 26, 87, 708
MaeII ACGT 1 cut(s) 789
MaeIII GTNAC 2 cut(s) 244, 518
MalI GATC 7 cut(s) 160, 305, 339, 371, 550, 641, 739
MboI GATC 7 cut(s) 158, 303, 337, 369, 548, 639, 737
MboII GAAGA 3 cut(s) 496, 629, 636
MflI RGATCY 1 cut(s) 548
MhlI GDGCHC 1 cut(s) 533
Mly113I GGCGCC 1 cut(s) 154
MlyI GAGTC 2 cut(s) 281, 820
MmeI TCCRAC 4 cut(s) 261, 300, 542, 800
MnlI CCTC 9 cut(s) 88, 94, 251, 460, 562, 620, 673, 760, 825
MroXI GAANNNNTTC 2 cut(s) 591, 852
MseI TTAA 1 cut(s) 765
MslI CAYNNNNRTG 1 cut(s) 516
MspI CCGG 4 cut(s) 130, 150, 490, 880
MspR9I CCNGG 4 cut(s) 151, 352, 490, 491
Mva1269I GAATGC 1 cut(s) 455
MvaI CCWGG 1 cut(s) 352
MvnI CGCG 1 cut(s) 503
MwoI GCNNNNNNNGC 3 cut(s) 15, 503, 732
NarI GGCGCC 1 cut(s) 154
NciI CCSGG 3 cut(s) 151, 490, 491
NcoI CCATGG 2 cut(s) 35, 794
NdeII GATC 7 cut(s) 158, 303, 337, 369, 548, 639, 737
NlaIII CATG 6 cut(s) 39, 290, 798, 821, 905, 921
NlaIV GGNNCC 5 cut(s) 32, 155, 532, 655, 774
NmeAIII GCCGAG 2 cut(s) 281, 682
NmuCI GTSAC 1 cut(s) 518
NspI RCATGY 1 cut(s) 290
OliI CACNNNNGTG 1 cut(s) 516
PaeI GCATGC 1 cut(s) 290
PagI TCATGA 1 cut(s) 917
PctI GAATGC 1 cut(s) 455
PdmI GAANNNNTTC 2 cut(s) 591, 852
PfeI GAWTC 1 cut(s) 477
PfoI TCCNGGA 1 cut(s) 350
PinAI ACCGGT 1 cut(s) 879
PkrI GCNGC 7 cut(s) 17, 20, 110, 418, 472, 505, 841
PleI GAGTC 2 cut(s) 280, 819
PluTI GGCGCC 1 cut(s) 157
PpsI GAGTC 2 cut(s) 280, 819
Psp1406I AACGTT 1 cut(s) 789
Psp6I CCWGG 1 cut(s) 350
PspFI CCCAGC 1 cut(s) 805
PspGI CCWGG 1 cut(s) 350
PspN4I GGNNCC 5 cut(s) 32, 155, 532, 655, 774
PsuI RGATCY 1 cut(s) 548
RsaI GTAC 2 cut(s) 233, 463
RsaNI GTAC 2 cut(s) 232, 462
RseI CAYNNNNRTG 1 cut(s) 516
SaqAI TTAA 1 cut(s) 765
SatI GCNGC 7 cut(s) 16, 19, 109, 417, 471, 504, 840
Sau3AI GATC 7 cut(s) 158, 303, 337, 369, 548, 639, 737
SchI GAGTC 2 cut(s) 281, 820
ScrFI CCNGG 4 cut(s) 151, 352, 490, 491
SduI GDGCHC 1 cut(s) 533
SfcI CTRYAG 2 cut(s) 222, 643
SfoI GGCGCC 1 cut(s) 155
SmaI CCCGGG 1 cut(s) 491
SmiMI CAYNNNNRTG 1 cut(s) 516
SphI GCATGC 1 cut(s) 290
SsiI CCGC 9 cut(s) 16, 19, 69, 253, 362, 416, 503, 693, 886
SspDI GGCGCC 1 cut(s) 153
SspMI CTAG 4 cut(s) 12, 26, 87, 708
StyD4I CCNGG 4 cut(s) 149, 350, 488, 489
StyI CCWWGG 2 cut(s) 35, 794
TaaI ACNGT 3 cut(s) 178, 524, 666
TaiI ACGT 1 cut(s) 792
TaqI TCGA 4 cut(s) 123, 391, 717, 856
TaqII GACCGA 1 cut(s) 306
TatI WGTACW 1 cut(s) 231
TauI GCSGC 4 cut(s) 18, 21, 419, 506
TfiI GAWTC 1 cut(s) 477
Tru1I TTAA 1 cut(s) 765
Tru9I TTAA 1 cut(s) 765
TseFI GTSAC 1 cut(s) 518
TseI GCWGC 3 cut(s) 108, 470, 839
Tsp45I GTSAC 1 cut(s) 518
TspDTI ATGAA 1 cut(s) 600
TspGWI ACGGA 3 cut(s) 350, 449, 885
TspMI CCCGGG 1 cut(s) 489
XceI RCATGY 1 cut(s) 290
XmaI CCCGGG 1 cut(s) 489
XmnI GAANNNNTTC 2 cut(s) 591, 852
XspI CTAG 4 cut(s) 12, 26, 87, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.