Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003282

Physical Location & Seq

Genomic Coordinates Reverse (-)

66678521 .. 66678991

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00275150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCTCTGCCCTAGCCGCTGCTTGCTAGGGTTCCAATGGCGCTCCCTAGCGCCAATCGTACAACTAATCGGCTCTGCTTCTTTGCCTAGAGAGGGAAAGAAGGTGTGCCCTAATGGCATCGACGACTGGCCTTCACAAGGGAAACTCGTGCGCCGATCTCCAAGGAACGCTGCTGCTTTGTGTCCAGAAATAGGTGATATCCAATGCAAATGGGGGACTGCGGAGTTGTGCTCTGATTTGGTGAAAGCTCGAGCGAATGCTTGCAGTAATGGGCTTCGCCGGCGTCGAGAGTTGTTGGTGGGTGGTACAGCCTTCCAATACATGCTTGCGGTGATGGGCTTCTATGCTGATCCAGGTCGGAACCGACCACGCAGAGACTGTCTGAAAAGGTCTGACGATGTGCATACACGGATGAATGCGATCGGCTCTTGTCGGTTGGTGGATGAGACGATGGATCGCTTCTATTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.42

Weight (kDa)

9.49

Isoelectric Point (pI)

62.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003282)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334151 RchiOBHm_Chr6g0275401
rosa_laevigata	RLG00000012330 RLG00000023103 RLG00000023473 RLG00000023476 RLG00000028751 RLG00000029476
rosa_multiflora	Rmu_co8467563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019700 Rroxscaffold_1G00039360 Rroxscaffold_3G00249990 Rroxscaffold_3G00275150 Rroxscaffold_6G00395480 Rroxscaffold_7G00190930
rosa_rugosa	Rorug03G0305200
rosa_samantha	Rh2AG435100 Rh2DG453400 Rh2DG691400 Rh3AG051100 Rh3BG052300 Rh3BG303700 Rh3CG052000 Rh3DG052700 Rh4AG232800 Rh4AG393900 Rh4BG028000 Rh4DG030700 Rh4DG400900 Rh5AG348100 Rh5AG355400 Rh5DG570200 Rh6AG205300 Rh6BG208300 Rh6BG518000 Rh7AG242500 Rh7AG438800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	16, 221, 329
AclWI	GGATC	2 cut(s)	344, 462
AcyI	GRCGYC	1 cut(s)	283
AfaI	GTAC	2 cut(s)	60, 307
AfiI	CCNNNNNNNGG	3 cut(s)	92, 137, 191
AjnI	CCWGG	1 cut(s)	352
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
Alw21I	GWGCWC	1 cut(s)	233
Alw26I	GTCTC	2 cut(s)	369, 440
AlwI	GGATC	2 cut(s)	344, 462
AlwNI	CAGNNNCTG	1 cut(s)	378
Ama87I	CYCGRG	1 cut(s)	249
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	3 cut(s)	18, 170, 173
AspLEI	GCGC	3 cut(s)	42, 52, 153
AsuHPI	GGTGA	3 cut(s)	206, 253, 343
AvaI	CYCGRG	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	110
BauI	CACGAG	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	233
BbvI	GCAGC	3 cut(s)	5, 157, 160
BccI	CCATC	2 cut(s)	328, 445
BciT130I	CCWGG	1 cut(s)	354
BcoDI	GTCTC	2 cut(s)	369, 440
BfaI	CTAG	5 cut(s)	12, 26, 47, 87, 469
BfoI	RGCGCY	2 cut(s)	43, 53
BglI	GCCNNNNNGGC	1 cut(s)	114
BisI	GCNGC	4 cut(s)	16, 19, 171, 174
BlsI	GCNGC	4 cut(s)	17, 20, 172, 175
Bme1390I	CCNGG	1 cut(s)	354
BmeT110I	CYCGRG	1 cut(s)	249
BmiI	GGNNCC	2 cut(s)	32, 362
BmrFI	CCNGG	1 cut(s)	354
BmsI	GCATC	1 cut(s)	126
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BsaHI	GRCGYC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 137, 191
Bse118I	RCCGGY	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	161
BseGI	GGATG	2 cut(s)	417, 448
BseLI	CCNNNNNNNGG	3 cut(s)	92, 137, 191
BseNI	ACTGG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	110
BseXI	GCAGC	3 cut(s)	5, 157, 160
Bsh1285I	CGRYCG	1 cut(s)	423
BshFI	GGCC	1 cut(s)	130
BsiEI	CGRYCG	1 cut(s)	423
BsiHKAI	GWGCWC	1 cut(s)	233
BsiHKCI	CYCGRG	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	280
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	3 cut(s)	92, 137, 191
BsmAI	GTCTC	2 cut(s)	369, 440
BsmBI	CGTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	229
BsmI	GAATGC	2 cut(s)	262, 421
BsnI	GGCC	1 cut(s)	130
BsoBI	CYCGRG	1 cut(s)	249
Bsp1286I	GDGCHC	2 cut(s)	110, 233
Bsp143I	GATC	4 cut(s)	155, 349, 420, 454
BspACI	CCGC	3 cut(s)	16, 221, 329
BspANI	GGCC	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	32, 362
BspPI	GGATC	2 cut(s)	344, 462
BsrFI	RCCGGY	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	4 cut(s)	155, 349, 420, 454
BssNI	GRCGYC	1 cut(s)	283
BssSI	CACGAG	1 cut(s)	146
BssT1I	CCWWGG	1 cut(s)	161
Bst2BI	CACGAG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	1 cut(s)	380
BstACI	GRCGYC	1 cut(s)	283
BstC8I	GCNNGC	4 cut(s)	23, 262, 281, 327
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	417, 448
BstH2I	RGCGCY	2 cut(s)	43, 53
BstHHI	GCGC	3 cut(s)	42, 52, 153
BstKTI	GATC	4 cut(s)	158, 352, 423, 457
BstMAI	GTCTC	2 cut(s)	369, 440
BstMBI	GATC	4 cut(s)	155, 349, 420, 454
BstMCI	CGRYCG	1 cut(s)	423
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 114, 280
BstNI	CCWGG	1 cut(s)	354
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	1 cut(s)	352
BstSLI	GKGCMC	1 cut(s)	110
BstV1I	GCAGC	3 cut(s)	5, 157, 160
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	417, 448
Cac8I	GCNNGC	4 cut(s)	23, 262, 281, 327
CaiI	CAGNNNCTG	1 cut(s)	378
CfoI	GCGC	3 cut(s)	42, 52, 153
Cfr10I	RCCGGY	1 cut(s)	279
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	59, 306
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	8 cut(s)	15, 72, 130, 248, 274, 311, 339, 426
CviKI_1	RGCY	8 cut(s)	15, 72, 130, 248, 274, 311, 339, 426
CviQI	GTAC	2 cut(s)	59, 306
DpnI	GATC	4 cut(s)	157, 351, 422, 456
DpnII	GATC	4 cut(s)	155, 349, 420, 454
Eco130I	CCWWGG	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	249
EcoNI	CCTNNNNNAGG	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	352
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	161
Esp3I	CGTCTC	1 cut(s)	440
FaeI	CATG	1 cut(s)	325
FaiI	YATR	3 cut(s)	323, 345, 405
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	1 cut(s)	321
Fnu4HI	GCNGC	4 cut(s)	16, 19, 171, 174
FokI	GGATG	2 cut(s)	424, 455
Fsp4HI	GCNGC	4 cut(s)	16, 19, 171, 174
FspBI	CTAG	5 cut(s)	12, 26, 47, 87, 469
GlaI	GCGC	3 cut(s)	41, 51, 152
GluI	GCNGC	4 cut(s)	16, 19, 171, 174
HaeII	RGCGCY	2 cut(s)	43, 53
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	1 cut(s)	280
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	3 cut(s)	42, 52, 153
Hin1I	GRCGYC	1 cut(s)	283
Hin1II	CATG	1 cut(s)	325
Hin6I	GCGC	3 cut(s)	40, 50, 151
HinP1I	GCGC	3 cut(s)	40, 50, 151
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	3 cut(s)	206, 253, 343
Hpy188I	TCNGA	4 cut(s)	235, 360, 384, 394
Hpy188III	TCNNGA	2 cut(s)	185, 287
Hpy99I	CGWCG	2 cut(s)	125, 288
HpyAV	CCTTC	3 cut(s)	94, 141, 322
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4V	TGCA	3 cut(s)	207, 264, 403
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 114, 280
Hsp92I	GRCGYC	1 cut(s)	283
Hsp92II	CATG	1 cut(s)	325
HspAI	GCGC	3 cut(s)	40, 50, 151
KroI	GCCGGC	1 cut(s)	279
KroNI	GCCGGC	1 cut(s)	281
Kzo9I	GATC	4 cut(s)	155, 349, 420, 454
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	5 cut(s)	112, 198, 293, 339, 366
Lsp1109I	GCAGC	3 cut(s)	5, 157, 160
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	5 cut(s)	12, 26, 47, 87, 469
MalI	GATC	4 cut(s)	157, 351, 422, 456
MboI	GATC	4 cut(s)	155, 349, 420, 454
MhlI	GDGCHC	2 cut(s)	110, 233
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	1 cut(s)	85
MreI	CGCCGGCG	1 cut(s)	279
MroNI	GCCGGC	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	1 cut(s)	354
Mva1269I	GAATGC	2 cut(s)	262, 421
MvaI	CCWGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	3 cut(s)	15, 114, 280
NaeI	GCCGGC	1 cut(s)	281
NdeII	GATC	4 cut(s)	155, 349, 420, 454
NgoMIV	GCCGGC	1 cut(s)	279
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	2 cut(s)	32, 362
NspI	RCATGY	1 cut(s)	325
PaeR7I	CTCGAG	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PctI	GAATGC	2 cut(s)	262, 421
PdiI	GCCGGC	1 cut(s)	281
PkrI	GCNGC	4 cut(s)	17, 20, 172, 175
Ple19I	CGATCG	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	2 cut(s)	32, 362
PspXI	VCTCGAGB	1 cut(s)	249
PstNI	CAGNNNCTG	1 cut(s)	378
PvuI	CGATCG	1 cut(s)	423
RsaI	GTAC	2 cut(s)	60, 307
RsaNI	GTAC	2 cut(s)	59, 306
SatI	GCNGC	4 cut(s)	16, 19, 171, 174
Sau3AI	GATC	4 cut(s)	155, 349, 420, 454
ScrFI	CCNGG	1 cut(s)	354
SduI	GDGCHC	2 cut(s)	110, 233
SetI	ASST	5 cut(s)	105, 196, 250, 358, 392
SfaNI	GCATC	1 cut(s)	126
Sfr274I	CTCGAG	1 cut(s)	249
SgrAI	CRCCGGYG	1 cut(s)	279
SlaI	CTCGAG	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
SsiI	CCGC	3 cut(s)	16, 221, 329
SspMI	CTAG	5 cut(s)	12, 26, 47, 87, 469
StyD4I	CCNGG	1 cut(s)	352
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	380
TaqI	TCGA	3 cut(s)	120, 250, 286
TauI	GCSGC	1 cut(s)	18
TseI	GCWGC	3 cut(s)	18, 170, 173
TspDTI	ATGAA	1 cut(s)	428
TspGWI	ACGGA	1 cut(s)	424
XagI	CCTNNNNNAGG	1 cut(s)	135
XceI	RCATGY	1 cut(s)	325
XhoI	CTCGAG	1 cut(s)	249
XspI	CTAG	5 cut(s)	12, 26, 47, 87, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.