RchiOBHm_Chr6g0275401

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003282
Physical Location & Seq
Reverse (-)
37198834 .. 37200284
1451 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24709

Sequence Viewer

Length: 870 bp
ATGCTCTCTTCTCGGACTCTCGTACGAGAGGCTTCTCCGCGGCGGTTGGTTTCGACTGGTGGCGGCTTTGCTCCTTTGACAGGGAAAGGGGTCCTTGCTCCTCTCTCTCATCTAATTTGCGGTGGTGGCGGCGGGTTTATTCGTCGGTATCCCCTAAACGTGGGCTTTGGCCTTTTTCTCATTGCTATAGTTGTTGGATATGATGGCAGTGATAGGTGTGTGGCTGATCGGATCTGGGATCGGAGGTGCTTTGGAATGAGGGCAGGGGTCGTCACGCCCTATAGTGGTGGCTGCTTTGGTAGCAAAGACGACTGGTTTGGCATTCAGCGGTTGTCTGGGGATTTACCATTTGATGGATGTGATGGAGATCCAGGGGTTGATTTAGGGCTGGTTTGGCCTGAGATTGGAAGCTATCGTGTTGGGACGATTACTCTCTCGTCCAGCACAGCCAGATTTGATAGAAGTGGGATATTGGGCTCGGTGATGCCAGCTGAACAACGTTGCTCGTGGATGGCTTCGGCGACGAAACTTCTGGGCGGGGTTGTTGGTCGCTTTTGCTTTGGTGGCAGTAAAGGTGGCATGGCCATCGGCGACACCTTTGACGGGGATAGAGGCAGTGTAGGTGGAGTCGGCGGCGGGTCTTTGGCGGCGACAGAGATGGTGCTCCTAGGGCGAACTGGAGCTCTTGTTGGGGCTGGACTCAGTTGGGGTTGGGCCTGGTGTGCTAGGGTTCCTCGATTTTGGGCCTTGGTAGTGTGGGCCTGGCCTGATTGGTTTCATAGAAATGTTAGTTCTCTATTTTTCAAGATAGGTTTGAGTTCGCATCTTTTCTCACGAAAAGATGATGGGCTTTATTTTTTCTTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

30.83

Weight (kDa)

9.14

Isoelectric Point (pI)

29.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 353
AccII CGCG 1 cut(s) 40
AclI AACGTT 1 cut(s) 499
AclWI GGATC 3 cut(s) 239, 246, 362
AcoI YGGCCR 1 cut(s) 582
AfaI GTAC 1 cut(s) 24
AfiI CCNNNNNNNGG 6 cut(s) 80, 160, 284, 353, 404, 603
AgsI TTSAA 1 cut(s) 805
AjnI CCWGG 3 cut(s) 370, 716, 761
AluBI AGCT 3 cut(s) 411, 491, 683
AluI AGCT 3 cut(s) 411, 491, 683
Alw21I GWGCWC 2 cut(s) 666, 685
AlwI GGATC 3 cut(s) 239, 246, 362
AoxI GGCC 7 cut(s) 169, 395, 582, 714, 744, 759, 764
ApeKI GCWGC 1 cut(s) 291
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AspA2I CCTAGG 1 cut(s) 667
AspS9I GGNCC 4 cut(s) 91, 714, 744, 759
AsuHPI GGTGA 1 cut(s) 493
AvaII GGWCC 1 cut(s) 91
AvrII CCTAGG 1 cut(s) 667
BalI TGGCCA 1 cut(s) 584
BanII GRGCYC 2 cut(s) 479, 685
BauI CACGAG 1 cut(s) 505
Bbv12I GWGCWC 2 cut(s) 666, 685
BbvI GCAGC 1 cut(s) 278
BccI CCATC 7 cut(s) 197, 347, 356, 505, 593, 652, 839
BcgI CGANNNNNNTGC 2 cut(s) 568, 602
BciT130I CCWGG 3 cut(s) 372, 718, 763
BciVI GTATCC 1 cut(s) 159
BfaI CTAG 2 cut(s) 668, 726
BfmI CTRYAG 2 cut(s) 186, 280
BfuI GTATCC 1 cut(s) 159
BisI GCNGC 6 cut(s) 41, 64, 130, 292, 634, 648
BlnI CCTAGG 1 cut(s) 667
BlsI GCNGC 6 cut(s) 42, 65, 131, 293, 635, 649
Bme1390I CCNGG 3 cut(s) 372, 718, 763
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 4 cut(s) 91, 714, 744, 759
BmiI GGNNCC 2 cut(s) 92, 732
BmrFI CCNGG 3 cut(s) 372, 718, 763
BmsI GCATC 2 cut(s) 474, 832
BpmI CTGGAG 1 cut(s) 699
BsaBI GATNNNNATC 1 cut(s) 366
BsaJI CCNNGG 4 cut(s) 38, 371, 667, 747
BsaXI ACNNNNNCTCC 2 cut(s) 672, 702
Bsc4I CCNNNNNNNGG 6 cut(s) 80, 160, 284, 353, 404, 603
Bse1I ACTGG 3 cut(s) 61, 317, 682
Bse3DI GCAATG 1 cut(s) 180
Bse8I GATNNNNATC 1 cut(s) 366
BseBI CCWGG 3 cut(s) 372, 718, 763
BseDI CCNNGG 4 cut(s) 38, 371, 667, 747
BseGI GGATG 2 cut(s) 362, 516
BseJI GATNNNNATC 1 cut(s) 366
BseLI CCNNNNNNNGG 6 cut(s) 80, 160, 284, 353, 404, 603
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 2 cut(s) 390, 715
BseNI ACTGG 3 cut(s) 61, 317, 682
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 278
Bsh1236I CGCG 1 cut(s) 40
BshFI GGCC 7 cut(s) 171, 397, 584, 716, 746, 761, 766
BsiHKAI GWGCWC 2 cut(s) 666, 685
BsiWI CGTACG 1 cut(s) 22
BslFI GGGAC 1 cut(s) 436
BslI CCNNNNNNNGG 6 cut(s) 80, 160, 284, 353, 404, 603
BsmFI GGGAC 1 cut(s) 436
BsmI GAATGC 1 cut(s) 321
BsnI GGCC 7 cut(s) 171, 397, 584, 716, 746, 761, 766
Bsp1286I GDGCHC 3 cut(s) 479, 666, 685
Bsp143I GATC 4 cut(s) 226, 231, 238, 367
BspANI GGCC 7 cut(s) 171, 397, 584, 716, 746, 761, 766
BspCNI CTCAG 2 cut(s) 391, 714
BspFNI CGCG 1 cut(s) 40
BspLI GGNNCC 2 cut(s) 92, 732
BspPI GGATC 3 cut(s) 239, 246, 362
BsrDI GCAATG 1 cut(s) 180
BsrI ACTGG 3 cut(s) 61, 317, 682
BssECI CCNNGG 4 cut(s) 38, 371, 667, 747
BssMI GATC 4 cut(s) 226, 231, 238, 367
BssSI CACGAG 1 cut(s) 505
BssT1I CCWWGG 2 cut(s) 667, 747
Bst2BI CACGAG 1 cut(s) 505
Bst2UI CCWGG 3 cut(s) 372, 718, 763
Bst6I CTCTTC 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 2 cut(s) 399, 701
BstDSI CCRYGG 1 cut(s) 38
BstENI CCTNNNNNAGG 1 cut(s) 78
BstF5I GGATG 2 cut(s) 362, 516
BstFNI CGCG 1 cut(s) 40
BstKTI GATC 4 cut(s) 229, 234, 241, 370
BstMBI GATC 4 cut(s) 226, 231, 238, 367
BstMWI GCNNNNNNNGC 6 cut(s) 126, 300, 394, 564, 670, 722
BstNI CCWGG 3 cut(s) 372, 718, 763
BstSCI CCNGG 3 cut(s) 370, 716, 761
BstSFI CTRYAG 2 cut(s) 186, 280
BstUI CGCG 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 278
BstX2I RGATCY 2 cut(s) 231, 367
BstYI RGATCY 2 cut(s) 231, 367
BsuI GTATCC 1 cut(s) 159
BsuRI GGCC 7 cut(s) 171, 397, 584, 716, 746, 761, 766
BtgI CCRYGG 1 cut(s) 38
BtsCI GGATG 2 cut(s) 362, 516
BtsI GCAGTG 2 cut(s) 214, 622
BtsIMutI CAGTG 2 cut(s) 214, 622
Cac8I GCNNGC 1 cut(s) 489
Cfr13I GGNCC 4 cut(s) 91, 714, 744, 759
Cfr42I CCGCGG 1 cut(s) 41
Csp6I GTAC 1 cut(s) 23
CviAII CATG 1 cut(s) 580
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 2 cut(s) 399, 701
DpnI GATC 4 cut(s) 228, 233, 240, 369
DpnII GATC 4 cut(s) 226, 231, 238, 367
EaeI YGGCCR 1 cut(s) 582
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Ecl136II GAGCTC 1 cut(s) 683
Eco130I CCWWGG 2 cut(s) 667, 747
Eco24I GRGCYC 2 cut(s) 479, 685
Eco47I GGWCC 1 cut(s) 91
Eco53kI GAGCTC 1 cut(s) 683
EcoICRI GAGCTC 1 cut(s) 683
EcoNI CCTNNNNNAGG 1 cut(s) 78
EcoO109I RGGNCCY 1 cut(s) 91
EcoRII CCWGG 3 cut(s) 370, 716, 761
EcoT14I CCWWGG 2 cut(s) 667, 747
EcoT38I GRGCYC 2 cut(s) 479, 685
ErhI CCWWGG 2 cut(s) 667, 747
FaeI CATG 1 cut(s) 583
FaiI YATR 5 cut(s) 188, 201, 282, 581, 780
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FaqI GGGAC 1 cut(s) 436
FatI CATG 1 cut(s) 579
FauI CCCGC 3 cut(s) 125, 530, 629
Fnu4HI GCNGC 6 cut(s) 41, 64, 130, 292, 634, 648
FokI GGATG 2 cut(s) 369, 523
FriOI GRGCYC 2 cut(s) 479, 685
Fsp4HI GCNGC 6 cut(s) 41, 64, 130, 292, 634, 648
FspBI CTAG 2 cut(s) 668, 726
GluI GCNGC 6 cut(s) 41, 64, 130, 292, 634, 648
GsuI CTGGAG 1 cut(s) 699
HaeIII GGCC 7 cut(s) 171, 397, 584, 716, 746, 761, 766
Hin1II CATG 1 cut(s) 583
HinfI GANTC 3 cut(s) 16, 627, 699
HphI GGTGA 1 cut(s) 493
Hpy188I TCNGA 3 cut(s) 15, 231, 243
Hpy188III TCNNGA 2 cut(s) 805, 834
Hpy99I CGWCG 2 cut(s) 147, 526
HpyCH4IV ACGT 2 cut(s) 159, 499
HpyF10VI GCNNNNNNNGC 6 cut(s) 126, 300, 394, 564, 670, 722
HpyF3I CTNAG 2 cut(s) 399, 701
HpySE526I ACGT 2 cut(s) 159, 499
Hsp92II CATG 1 cut(s) 583
KspI CCGCGG 1 cut(s) 41
Kzo9I GATC 4 cut(s) 226, 231, 238, 367
LmnI GCTCC 4 cut(s) 76, 103, 669, 680
Lsp1109I GCAGC 1 cut(s) 278
LweI GCATC 2 cut(s) 474, 832
MaeI CTAG 2 cut(s) 668, 726
MaeII ACGT 2 cut(s) 159, 499
MaeIII GTNAC 1 cut(s) 271
MalI GATC 4 cut(s) 228, 233, 240, 369
MboI GATC 4 cut(s) 226, 231, 238, 367
MflI RGATCY 2 cut(s) 231, 367
MhlI GDGCHC 3 cut(s) 479, 666, 685
MlsI TGGCCA 1 cut(s) 584
MluCI AATT 1 cut(s) 114
MluNI TGGCCA 1 cut(s) 584
MlyI GAGTC 3 cut(s) 10, 636, 693
MmeI TCCRAC 1 cut(s) 175
MnlI CCTC 6 cut(s) 22, 111, 237, 252, 605, 744
Mox20I TGGCCA 1 cut(s) 584
MscI TGGCCA 1 cut(s) 584
MslI CAYNNNNRTG 1 cut(s) 783
Msp20I TGGCCA 1 cut(s) 584
MspA1I CMGCKG 3 cut(s) 40, 328, 491
MspR9I CCNGG 3 cut(s) 372, 718, 763
Mva1269I GAATGC 1 cut(s) 321
MvaI CCWGG 3 cut(s) 372, 718, 763
MvnI CGCG 1 cut(s) 40
MwoI GCNNNNNNNGC 6 cut(s) 126, 300, 394, 564, 670, 722
NdeII GATC 4 cut(s) 226, 231, 238, 367
NlaIII CATG 1 cut(s) 583
NlaIV GGNNCC 2 cut(s) 92, 732
NmuCI GTSAC 1 cut(s) 271
PctI GAATGC 1 cut(s) 321
Pfl23II CGTACG 1 cut(s) 22
PflMI CCANNNNNTGG 1 cut(s) 353
PkrI GCNGC 6 cut(s) 42, 65, 131, 293, 635, 649
PleI GAGTC 3 cut(s) 10, 635, 693
PpsI GAGTC 3 cut(s) 10, 635, 693
PpuMI RGGWCCY 1 cut(s) 91
Psp124BI GAGCTC 1 cut(s) 685
Psp1406I AACGTT 1 cut(s) 499
Psp5II RGGWCCY 1 cut(s) 91
Psp6I CCWGG 3 cut(s) 370, 716, 761
PspGI CCWGG 3 cut(s) 370, 716, 761
PspLI CGTACG 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 92, 732
PspPI GGNCC 4 cut(s) 91, 714, 744, 759
PspPPI RGGWCCY 1 cut(s) 91
PsuI RGATCY 2 cut(s) 231, 367
PvuII CAGCTG 1 cut(s) 491
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 783
SacI GAGCTC 1 cut(s) 685
SacII CCGCGG 1 cut(s) 41
SatI GCNGC 6 cut(s) 41, 64, 130, 292, 634, 648
Sau3AI GATC 4 cut(s) 226, 231, 238, 367
Sau96I GGNCC 4 cut(s) 91, 714, 744, 759
SchI GAGTC 3 cut(s) 10, 636, 693
ScrFI CCNGG 3 cut(s) 372, 718, 763
SduI GDGCHC 3 cut(s) 479, 666, 685
SfaNI GCATC 2 cut(s) 474, 832
SfcI CTRYAG 2 cut(s) 186, 280
Sfr303I CCGCGG 1 cut(s) 41
SgrBI CCGCGG 1 cut(s) 41
SinI GGWCC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 783
Sse9I AATT 1 cut(s) 114
SspMI CTAG 2 cut(s) 668, 726
SstI GAGCTC 1 cut(s) 685
StyD4I CCNGG 3 cut(s) 370, 716, 761
StyI CCWWGG 2 cut(s) 667, 747
TaiI ACGT 2 cut(s) 162, 502
TaqI TCGA 2 cut(s) 53, 736
TasI AATT 1 cut(s) 114
TauI GCSGC 5 cut(s) 43, 66, 132, 636, 650
TscAI CASTG 2 cut(s) 214, 622
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 1 cut(s) 291
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 767
TspRI CASTG 2 cut(s) 214, 622
Van91I CCANNNNNTGG 1 cut(s) 353
VpaK11BI GGWCC 1 cut(s) 91
XagI CCTNNNNNAGG 1 cut(s) 78
XmaJI CCTAGG 1 cut(s) 667
XspI CTAG 2 cut(s) 668, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.