Rh3BG303700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0003282
Physical Location & Seq
Reverse (-)
30667768 .. 30668333
566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG303700.1

Sequence Viewer

Length: 474 bp
ATGAGGGCAGGGGTCGTCTCACCTTGTAGTGATGGCTGTTTTGGTAGCAAAGACGACTGGTTTGGCATTCAGCCGTCGTCTGGGGAGTTACCTTTTGATGGATGTGATGGAGATCCAGGGGTTGCTTTAGGGCTGGTTTGGCCTGAGATTGGAAGCTCTAGTGTTGGGAGGATTACTTTCTCACCCAGCACAGCCGGTTTTGGTAGAAGAGGGAGACTGGGTTCGGTGATGCCAGCGGAGCAACTTTGCTCGAGGACGACTTCGGCGACACAACTTTTAGCTAGGGTCGTGGGTCGCTTCTGCTTTGGTGGTGGTAAAAGTGGTGTAGCCATCGGCGAAACCTCTGACGGCGACAGAGGCAATGCAGGTGGTGTCGGCAGTGGCTCTTTGGCGGCGACAGTGAGGGTGCTCCTAGGGCGAACTGGAGCTCTTGTTGGGGCTGGACTCAGTTGGGCTTGGGCCTGGTTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

15.79

Weight (kDa)

7.61

Isoelectric Point (pI)

31.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 356
Acc36I ACCTGC 1 cut(s) 356
AciI CCGC 2 cut(s) 236, 392
AclWI GGATC 1 cut(s) 107
AfiI CCNNNNNNNGG 4 cut(s) 80, 98, 149, 468
AjnI CCWGG 2 cut(s) 115, 461
AloI GAACNNNNNNTCC 2 cut(s) 205, 237
AluBI AGCT 3 cut(s) 156, 281, 428
AluI AGCT 3 cut(s) 156, 281, 428
Alw21I GWGCWC 2 cut(s) 411, 430
Alw26I GTCTC 2 cut(s) 22, 208
AlwI GGATC 1 cut(s) 107
Ama87I CYCGRG 1 cut(s) 250
AoxI GGCC 2 cut(s) 140, 459
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AspA2I CCTAGG 1 cut(s) 412
AspS9I GGNCC 1 cut(s) 459
AsuHPI GGTGA 3 cut(s) 12, 174, 238
AvaI CYCGRG 1 cut(s) 250
AvrII CCTAGG 1 cut(s) 412
BanII GRGCYC 1 cut(s) 430
Bbv12I GWGCWC 2 cut(s) 411, 430
BccI CCATC 4 cut(s) 26, 92, 101, 338
BceAI ACGGC 2 cut(s) 58, 364
BciT130I CCWGG 2 cut(s) 117, 463
BcoDI GTCTC 2 cut(s) 22, 208
BfaI CTAG 3 cut(s) 159, 282, 413
BfuAI ACCTGC 1 cut(s) 356
BisI GCNGC 1 cut(s) 393
BlnI CCTAGG 1 cut(s) 412
BlsI GCNGC 1 cut(s) 394
Bme1390I CCNGG 2 cut(s) 117, 463
BmeT110I CYCGRG 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 459
BmrFI CCNGG 2 cut(s) 117, 463
BmrI ACTGGG 1 cut(s) 227
BmsI GCATC 1 cut(s) 219
BmuI ACTGGG 1 cut(s) 227
BpmI CTGGAG 1 cut(s) 444
BsaBI GATNNNNATC 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 116, 412
BsaXI ACNNNNNCTCC 4 cut(s) 205, 235, 417, 447
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 98, 149, 468
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 3 cut(s) 62, 222, 427
Bse3DI GCAATG 1 cut(s) 367
Bse8I GATNNNNATC 1 cut(s) 111
BseBI CCWGG 2 cut(s) 117, 463
BseDI CCNNGG 2 cut(s) 116, 412
BseGI GGATG 1 cut(s) 107
BseJI GATNNNNATC 1 cut(s) 111
BseLI CCNNNNNNNGG 4 cut(s) 80, 98, 149, 468
BseMI GCAATG 1 cut(s) 367
BseMII CTCAG 2 cut(s) 135, 460
BseNI ACTGG 3 cut(s) 62, 222, 427
BseYI CCCAGC 1 cut(s) 185
BshFI GGCC 2 cut(s) 142, 461
BsiHKAI GWGCWC 2 cut(s) 411, 430
BsiHKCI CYCGRG 1 cut(s) 250
BsiSI CCGG 1 cut(s) 195
BslI CCNNNNNNNGG 4 cut(s) 80, 98, 149, 468
BsmAI GTCTC 2 cut(s) 22, 208
BsmBI CGTCTC 1 cut(s) 22
BsmI GAATGC 1 cut(s) 66
BsnI GGCC 2 cut(s) 142, 461
BsoBI CYCGRG 1 cut(s) 250
Bsp1286I GDGCHC 2 cut(s) 411, 430
Bsp143I GATC 1 cut(s) 112
BspACI CCGC 2 cut(s) 236, 392
BspANI GGCC 2 cut(s) 142, 461
BspCNI CTCAG 2 cut(s) 136, 459
BspMI ACCTGC 1 cut(s) 356
BspPI GGATC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 367
BsrFI RCCGGY 1 cut(s) 194
BsrI ACTGG 3 cut(s) 62, 222, 427
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 2 cut(s) 116, 412
BssMI GATC 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 412
Bst2UI CCWGG 2 cut(s) 117, 463
Bst4CI ACNGT 1 cut(s) 400
Bst6I CTCTTC 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 144, 446
BstF5I GGATG 1 cut(s) 107
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 2 cut(s) 22, 208
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 4 cut(s) 139, 238, 357, 415
BstNI CCWGG 2 cut(s) 117, 463
BstSCI CCNGG 2 cut(s) 115, 461
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 2 cut(s) 142, 461
BtsCI GGATG 1 cut(s) 107
BtsI GCAGTG 1 cut(s) 385
BtsIMutI CAGTG 2 cut(s) 385, 405
BveI ACCTGC 1 cut(s) 356
Cac8I GCNNGC 1 cut(s) 234
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 459
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
DdeI CTNAG 2 cut(s) 144, 446
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 202
EarI CTCTTC 1 cut(s) 202
Ecl136II GAGCTC 1 cut(s) 428
Eco130I CCWWGG 1 cut(s) 412
Eco24I GRGCYC 1 cut(s) 430
Eco53kI GAGCTC 1 cut(s) 428
Eco88I CYCGRG 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 428
EcoRII CCWGG 2 cut(s) 115, 461
EcoT14I CCWWGG 1 cut(s) 412
EcoT38I GRGCYC 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 412
Esp3I CGTCTC 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 393
FokI GGATG 1 cut(s) 114
FriOI GRGCYC 1 cut(s) 430
Fsp4HI GCNGC 1 cut(s) 393
FspBI CTAG 3 cut(s) 159, 282, 413
GluI GCNGC 1 cut(s) 393
GsaI CCCAGC 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 2 cut(s) 142, 461
HapII CCGG 1 cut(s) 195
HinfI GANTC 1 cut(s) 444
HpaII CCGG 1 cut(s) 195
HphI GGTGA 3 cut(s) 12, 174, 238
Hpy188I TCNGA 1 cut(s) 346
Hpy99I CGWCG 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4V TGCA 1 cut(s) 365
HpyF10VI GCNNNNNNNGC 4 cut(s) 139, 238, 357, 415
HpyF3I CTNAG 2 cut(s) 144, 446
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 3 cut(s) 238, 414, 425
LweI GCATC 1 cut(s) 219
MaeI CTAG 3 cut(s) 159, 282, 413
MaeIII GTNAC 1 cut(s) 87
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 1 cut(s) 219
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 2 cut(s) 411, 430
MlyI GAGTC 1 cut(s) 438
MnlI CCTC 6 cut(s) 162, 203, 246, 350, 352, 396
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 2 cut(s) 117, 463
Mva1269I GAATGC 1 cut(s) 66
MvaI CCWGG 2 cut(s) 117, 463
MwoI GCNNNNNNNGC 4 cut(s) 139, 238, 357, 415
NdeII GATC 1 cut(s) 112
PaeR7I CTCGAG 1 cut(s) 250
PaqCI CACCTGC 1 cut(s) 356
PcsI WCGNNNNNNNCGW 1 cut(s) 263
PctI GAATGC 1 cut(s) 66
PkrI GCNGC 1 cut(s) 394
PleI GAGTC 1 cut(s) 438
PpsI GAGTC 1 cut(s) 438
Psp124BI GAGCTC 1 cut(s) 430
Psp6I CCWGG 2 cut(s) 115, 461
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 2 cut(s) 115, 461
PspPI GGNCC 1 cut(s) 459
PspXI VCTCGAGB 1 cut(s) 250
PsuI RGATCY 1 cut(s) 112
SacI GAGCTC 1 cut(s) 430
SatI GCNGC 1 cut(s) 393
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 1 cut(s) 459
SchI GAGTC 1 cut(s) 438
ScrFI CCNGG 2 cut(s) 117, 463
SduI GDGCHC 2 cut(s) 411, 430
SetI ASST 7 cut(s) 25, 94, 158, 283, 344, 370, 430
SfaNI GCATC 1 cut(s) 219
Sfr274I CTCGAG 1 cut(s) 250
SlaI CTCGAG 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
SsiI CCGC 2 cut(s) 236, 392
SspMI CTAG 3 cut(s) 159, 282, 413
SstI GAGCTC 1 cut(s) 430
StyD4I CCNGG 2 cut(s) 115, 461
StyI CCWWGG 1 cut(s) 412
TaaI ACNGT 1 cut(s) 400
TaqI TCGA 1 cut(s) 251
TauI GCSGC 1 cut(s) 395
TscAI CASTG 2 cut(s) 385, 405
TspRI CASTG 2 cut(s) 385, 405
XhoI CTCGAG 1 cut(s) 250
XmaJI CCTAGG 1 cut(s) 412
XspI CTAG 3 cut(s) 159, 282, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.