Rh5DG570200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003282
Physical Location & Seq
Reverse (-)
87617344 .. 87618790
1447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG570200.1

Sequence Viewer

Length: 804 bp
ATGCTCTGCCCTAGCCGCCGCTTGCTAGGTTTCCAATGGCGCTCCCTTGCGTCAATCCAAATCGGTGATCTTTCTTTGCCTCGAGAGGAGAAGAATGTATACCGCCCTAAGAGTGTCGAGAATACGCCTCTGCCGGCCGAACTCGTGCTCCAATCTTCAAAGGAAGGCGCTGTTGTGCGTCCAACAACAAGTGACGAGCGATGTAAATGGGGGACTACGAAATACTCTTCTCATGTGAACGTCGGTGGCCGGCGTTGGCAGTCGTGGGTGATGGAGATGAGATCCTCTGTCAATCGACCACGCAGAGGACGTCTGAAGAATCGGGATGATAGGCTTGCAAAGCTAGATGGGATCTGCTCTGGCCGGTTGTGGGATGCGGTAGAGGATCGCTTCCGCCCCCAAAACAAGGTGGTGGCGATCTGGTATTCCAGCAATGCAACAATTCGGCTTCGAATTGCAGGAGCTGTGAAATCGCACGTTGGTCTTGCCATAGAGTTGCGTCCAGATGCAGCGAGAAGACCATGGCGGGTTGTGGCGATGCTGGGTGTTGGTACTGCTGCTGATCGAAAGGTGGTAGCCCGGTTGGAGGATGCGGTTTTGTGGCCCAAGTCACGGTGGTGGCCCATTGCAATTTGGATATTCAAGGTAATGCCTGGCATGACTTGGGTGTCCAGAGAGAAGTGGAAGCCCAACTCTGTTTGGCTTCCACTTGCATGGAATAAAGCACAAACAAATTCAGTGTCACATTGTGACGGAGTGACTATGCTTGGAGACGAGCTCTCTGCTTTTAAAAATAAGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

30.49

Weight (kDa)

10.51

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 667
AatII GACGTC 1 cut(s) 313
AccI GTMKAC 1 cut(s) 99
AciI CCGC 7 cut(s) 16, 19, 103, 377, 394, 526, 593
AclWI GGATC 3 cut(s) 276, 359, 393
AcoI YGGCCR 3 cut(s) 135, 247, 361
AcsI RAATTY 1 cut(s) 733
AcuI CTGAAG 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 310
AdeI CACNNNGTG 1 cut(s) 749
AfaI GTAC 1 cut(s) 553
AfiI CCNNNNNNNGG 5 cut(s) 305, 370, 406, 586, 612
AgsI TTSAA 2 cut(s) 159, 643
AjnI CCWGG 1 cut(s) 652
AleI CACNNNNGTG 1 cut(s) 616
AloI GAACNNNNNNTCC 2 cut(s) 132, 164
AluBI AGCT 3 cut(s) 343, 464, 778
AluI AGCT 3 cut(s) 343, 464, 778
Alw21I GWGCWC 2 cut(s) 150, 780
Alw26I GTCTC 1 cut(s) 765
AlwI GGATC 3 cut(s) 276, 359, 393
AlwNI CAGNNNCTG 1 cut(s) 464
Ama87I CYCGRG 1 cut(s) 81
AoxI GGCC 5 cut(s) 135, 247, 361, 602, 620
ApeKI GCWGC 2 cut(s) 509, 557
ApoI RAATTY 1 cut(s) 733
ArsI GACNNNNNNTTYG 2 cut(s) 725, 757
AspLEI GCGC 2 cut(s) 42, 170
AspS9I GGNCC 2 cut(s) 603, 621
AsuC2I CCSGG 1 cut(s) 580
AsuHPI GGTGA 2 cut(s) 77, 280
AsuII TTCGAA 1 cut(s) 451
AvaI CYCGRG 1 cut(s) 81
BanII GRGCYC 1 cut(s) 780
BarI GAAGNNNNNNTAC 2 cut(s) 83, 115
BauI CACGAG 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 523
Bbv12I GWGCWC 2 cut(s) 150, 780
BbvI GCAGC 2 cut(s) 521, 544
BccI CCATC 2 cut(s) 265, 341
BcgI CGANNNNNNTGC 2 cut(s) 764, 798
BciT130I CCWGG 1 cut(s) 654
BcnI CCSGG 1 cut(s) 580
BcoDI GTCTC 1 cut(s) 765
BfaI CTAG 3 cut(s) 12, 26, 344
BfoI RGCGCY 2 cut(s) 43, 171
BisI GCNGC 4 cut(s) 16, 19, 510, 558
BlsI GCNGC 4 cut(s) 17, 20, 511, 559
Bme1390I CCNGG 2 cut(s) 580, 654
BmeT110I CYCGRG 1 cut(s) 81
BmgT120I GGNCC 2 cut(s) 603, 621
BmrFI CCNGG 2 cut(s) 580, 654
BmsI GCATC 4 cut(s) 364, 496, 528, 580
BpiI GAAGAC 1 cut(s) 523
BplI GAGNNNNNCTC 2 cut(s) 762, 794
Bpu14I TTCGAA 1 cut(s) 451
BpuMI CCSGG 1 cut(s) 580
BsaHI GRCGYC 1 cut(s) 310
BsaJI CCNNGG 1 cut(s) 521
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 5 cut(s) 305, 370, 406, 586, 612
Bse118I RCCGGY 3 cut(s) 133, 249, 363
Bse3DI GCAATG 2 cut(s) 439, 624
BseBI CCWGG 1 cut(s) 654
BseDI CCNNGG 1 cut(s) 521
BseGI GGATG 3 cut(s) 331, 379, 595
BseLI CCNNNNNNNGG 5 cut(s) 305, 370, 406, 586, 612
BseMI GCAATG 2 cut(s) 439, 624
BseRI GAGGAG 1 cut(s) 101
BseX3I CGGCCG 1 cut(s) 135
BseXI GCAGC 2 cut(s) 521, 544
BseYI CCCAGC 1 cut(s) 541
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 5 cut(s) 137, 249, 363, 604, 622
BsiEI CGRYCG 1 cut(s) 138
BsiHKAI GWGCWC 2 cut(s) 150, 780
BsiHKCI CYCGRG 1 cut(s) 81
BsiSI CCGG 4 cut(s) 134, 250, 364, 580
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 5 cut(s) 305, 370, 406, 586, 612
BsmAI GTCTC 1 cut(s) 765
BsmBI CGTCTC 1 cut(s) 765
BsmFI GGGAC 1 cut(s) 226
BsnI GGCC 5 cut(s) 137, 249, 363, 604, 622
BsoBI CYCGRG 1 cut(s) 81
Bsp119I TTCGAA 1 cut(s) 451
Bsp1286I GDGCHC 2 cut(s) 150, 780
Bsp143I GATC 6 cut(s) 67, 281, 351, 385, 417, 562
Bsp19I CCATGG 1 cut(s) 521
BspACI CCGC 7 cut(s) 16, 19, 103, 377, 394, 526, 593
BspANI GGCC 5 cut(s) 137, 249, 363, 604, 622
BspPI GGATC 3 cut(s) 276, 359, 393
BspT104I TTCGAA 1 cut(s) 451
BsrDI GCAATG 2 cut(s) 439, 624
BsrFI RCCGGY 3 cut(s) 133, 249, 363
BssAI RCCGGY 3 cut(s) 133, 249, 363
BssECI CCNNGG 1 cut(s) 521
BssMI GATC 6 cut(s) 67, 281, 351, 385, 417, 562
BssNAI GTATAC 1 cut(s) 100
BssNI GRCGYC 1 cut(s) 310
BssSI CACGAG 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 521
Bst1107I GTATAC 1 cut(s) 100
Bst2BI CACGAG 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 1 cut(s) 615
Bst6I CTCTTC 1 cut(s) 232
BstACI GRCGYC 1 cut(s) 310
BstBI TTCGAA 1 cut(s) 451
BstC8I GCNNGC 4 cut(s) 23, 135, 251, 336
BstDEI CTNAG 1 cut(s) 108
BstDSI CCRYGG 1 cut(s) 521
BstF5I GGATG 3 cut(s) 331, 379, 595
BstH2I RGCGCY 2 cut(s) 43, 171
BstHHI GCGC 2 cut(s) 42, 170
BstKTI GATC 6 cut(s) 70, 284, 354, 388, 420, 565
BstMAI GTCTC 1 cut(s) 765
BstMBI GATC 6 cut(s) 67, 281, 351, 385, 417, 562
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 2 cut(s) 15, 340
BstNI CCWGG 1 cut(s) 654
BstSCI CCNGG 2 cut(s) 578, 652
BstV1I GCAGC 2 cut(s) 521, 544
BstV2I GAAGAC 1 cut(s) 523
BstX2I RGATCY 2 cut(s) 281, 351
BstXI CCANNNNNNTGG 1 cut(s) 714
BstYI RGATCY 2 cut(s) 281, 351
BstZ17I GTATAC 1 cut(s) 100
BstZI CGGCCG 1 cut(s) 135
BsuRI GGCC 5 cut(s) 137, 249, 363, 604, 622
BtgI CCRYGG 1 cut(s) 521
BtgZI GCGATG 2 cut(s) 214, 551
BtsCI GGATG 3 cut(s) 331, 379, 595
BtsIMutI CAGTG 1 cut(s) 744
Cac8I GCNNGC 4 cut(s) 23, 135, 251, 336
CaiI CAGNNNCTG 1 cut(s) 464
CfoI GCGC 2 cut(s) 42, 170
Cfr10I RCCGGY 3 cut(s) 133, 249, 363
Cfr13I GGNCC 2 cut(s) 603, 621
CseI GACGC 3 cut(s) 39, 167, 488
Csp6I GTAC 1 cut(s) 552
CviAII CATG 4 cut(s) 233, 522, 658, 714
CviQI GTAC 1 cut(s) 552
DdeI CTNAG 1 cut(s) 108
DpnI GATC 6 cut(s) 69, 283, 353, 387, 419, 564
DpnII GATC 6 cut(s) 67, 281, 351, 385, 417, 562
DraI TTTAAA 1 cut(s) 790
DraIII CACNNNGTG 1 cut(s) 749
DrdI GACNNNNNNGTC 1 cut(s) 667
DseDI GACNNNNNNGTC 1 cut(s) 667
EaeI YGGCCR 3 cut(s) 135, 247, 361
EagI CGGCCG 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 232
EciI GGCGGA 1 cut(s) 383
Ecl136II GAGCTC 1 cut(s) 778
EclXI CGGCCG 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 521
Eco24I GRGCYC 1 cut(s) 780
Eco52I CGGCCG 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 778
Eco57I CTGAAG 1 cut(s) 335
Eco88I CYCGRG 1 cut(s) 81
EcoICRI GAGCTC 1 cut(s) 778
EcoRII CCWGG 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 521
EcoT38I GRGCYC 1 cut(s) 780
ErhI CCWWGG 1 cut(s) 521
Esp3I CGTCTC 1 cut(s) 765
FaeI CATG 4 cut(s) 236, 525, 661, 717
FaiI YATR 7 cut(s) 100, 234, 491, 523, 659, 715, 764
FaqI GGGAC 1 cut(s) 226
FatI CATG 4 cut(s) 232, 521, 657, 713
FauI CCCGC 1 cut(s) 519
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 4 cut(s) 16, 19, 510, 558
FokI GGATG 3 cut(s) 338, 386, 602
FriOI GRGCYC 1 cut(s) 780
Fsp4HI GCNGC 4 cut(s) 16, 19, 510, 558
FspBI CTAG 3 cut(s) 12, 26, 344
GlaI GCGC 2 cut(s) 41, 169
GluI GCNGC 4 cut(s) 16, 19, 510, 558
GsaI CCCAGC 1 cut(s) 545
HaeII RGCGCY 2 cut(s) 43, 171
HaeIII GGCC 5 cut(s) 137, 249, 363, 604, 622
HapII CCGG 4 cut(s) 134, 250, 364, 580
HgaI GACGC 3 cut(s) 39, 167, 488
HhaI GCGC 2 cut(s) 42, 170
Hin1I GRCGYC 1 cut(s) 310
Hin1II CATG 4 cut(s) 236, 525, 661, 717
Hin6I GCGC 2 cut(s) 40, 168
HinP1I GCGC 2 cut(s) 40, 168
HinfI GANTC 1 cut(s) 319
HpaII CCGG 4 cut(s) 134, 250, 364, 580
HphI GGTGA 2 cut(s) 77, 280
Hpy166II GTNNAC 2 cut(s) 100, 238
Hpy188I TCNGA 1 cut(s) 315
Hpy188III TCNNGA 5 cut(s) 83, 118, 323, 503, 672
Hpy8I GTNNAC 2 cut(s) 100, 238
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 615
HpyCH4IV ACGT 3 cut(s) 240, 310, 477
HpyCH4V TGCA 6 cut(s) 338, 437, 458, 509, 629, 713
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 340
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 3 cut(s) 240, 310, 477
Hsp92I GRCGYC 1 cut(s) 310
Hsp92II CATG 4 cut(s) 236, 525, 661, 717
HspAI GCGC 2 cut(s) 40, 168
KroI GCCGGC 2 cut(s) 133, 249
KroNI GCCGGC 2 cut(s) 135, 251
Kzo9I GATC 6 cut(s) 67, 281, 351, 385, 417, 562
LmnI GCTCC 3 cut(s) 47, 153, 461
Lsp1109I GCAGC 2 cut(s) 521, 544
LweI GCATC 4 cut(s) 364, 496, 528, 580
MaeI CTAG 3 cut(s) 12, 26, 344
MaeII ACGT 3 cut(s) 240, 310, 477
MaeIII GTNAC 5 cut(s) 191, 609, 741, 749, 757
MalI GATC 6 cut(s) 69, 283, 353, 387, 419, 564
MboI GATC 6 cut(s) 67, 281, 351, 385, 417, 562
MboII GAAGA 5 cut(s) 103, 147, 219, 328, 528
MflI RGATCY 2 cut(s) 281, 351
MhlI GDGCHC 2 cut(s) 150, 780
MluCI AATT 4 cut(s) 441, 453, 630, 733
MmeI TCCRAC 2 cut(s) 206, 564
MnlI CCTC 7 cut(s) 79, 90, 138, 295, 299, 376, 580
MroNI GCCGGC 2 cut(s) 133, 249
MseI TTAA 1 cut(s) 789
MslI CAYNNNNRTG 2 cut(s) 616, 712
MspI CCGG 4 cut(s) 134, 250, 364, 580
MspR9I CCNGG 2 cut(s) 580, 654
MvaI CCWGG 1 cut(s) 654
MwoI GCNNNNNNNGC 2 cut(s) 15, 340
NaeI GCCGGC 2 cut(s) 135, 251
NciI CCSGG 1 cut(s) 580
NcoI CCATGG 1 cut(s) 521
NdeII GATC 6 cut(s) 67, 281, 351, 385, 417, 562
NgoMIV GCCGGC 2 cut(s) 133, 249
NlaIII CATG 4 cut(s) 236, 525, 661, 717
NmuCI GTSAC 5 cut(s) 191, 609, 741, 749, 757
NspV TTCGAA 1 cut(s) 451
OliI CACNNNNGTG 1 cut(s) 616
PaeR7I CTCGAG 1 cut(s) 81
PcsI WCGNNNNNNNCGW 1 cut(s) 307
PdiI GCCGGC 2 cut(s) 135, 251
PfeI GAWTC 1 cut(s) 319
PkrI GCNGC 4 cut(s) 17, 20, 511, 559
Psp124BI GAGCTC 1 cut(s) 780
Psp6I CCWGG 1 cut(s) 652
PspFI CCCAGC 1 cut(s) 541
PspGI CCWGG 1 cut(s) 652
PspPI GGNCC 2 cut(s) 603, 621
PstNI CAGNNNCTG 1 cut(s) 464
PsuI RGATCY 2 cut(s) 281, 351
RsaI GTAC 1 cut(s) 553
RsaNI GTAC 1 cut(s) 552
RseI CAYNNNNRTG 2 cut(s) 616, 712
SacI GAGCTC 1 cut(s) 780
SaqAI TTAA 1 cut(s) 789
SatI GCNGC 4 cut(s) 16, 19, 510, 558
Sau3AI GATC 6 cut(s) 67, 281, 351, 385, 417, 562
Sau96I GGNCC 2 cut(s) 603, 621
ScrFI CCNGG 2 cut(s) 580, 654
SduI GDGCHC 2 cut(s) 150, 780
SfaNI GCATC 4 cut(s) 364, 496, 528, 580
Sfr274I CTCGAG 1 cut(s) 81
SfuI TTCGAA 1 cut(s) 451
SlaI CTCGAG 1 cut(s) 81
SmiMI CAYNNNNRTG 2 cut(s) 616, 712
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 4 cut(s) 441, 453, 630, 733
SsiI CCGC 7 cut(s) 16, 19, 103, 377, 394, 526, 593
SspMI CTAG 3 cut(s) 12, 26, 344
SstI GAGCTC 1 cut(s) 780
StyD4I CCNGG 2 cut(s) 578, 652
StyI CCWWGG 1 cut(s) 521
TaaI ACNGT 1 cut(s) 615
TaiI ACGT 3 cut(s) 243, 313, 480
TaqI TCGA 5 cut(s) 82, 117, 295, 451, 565
TasI AATT 4 cut(s) 441, 453, 630, 733
TauI GCSGC 2 cut(s) 18, 21
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 1 cut(s) 789
Tru9I TTAA 1 cut(s) 789
TscAI CASTG 1 cut(s) 744
TseFI GTSAC 5 cut(s) 191, 609, 741, 749, 757
TseI GCWGC 2 cut(s) 509, 557
Tsp45I GTSAC 5 cut(s) 191, 609, 741, 749, 757
TspGWI ACGGA 1 cut(s) 768
TspRI CASTG 1 cut(s) 744
XapI RAATTY 1 cut(s) 733
XhoI CTCGAG 1 cut(s) 81
XmiI GTMKAC 1 cut(s) 99
XspI CTAG 3 cut(s) 12, 26, 344
ZraI GACGTC 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.