Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003282

Physical Location & Seq

Genomic Coordinates Forward (+)

43733634 .. 43734115

Gene Structure 482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00249990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAGGGCAGGGGTCGCCTCGACCTGCAGTGGTGGATGGTTTGGCAGCAAAGACGACTGGGTTGGTATTCAGCCGTCGTCTGGGGCTTTACCAGTTGATGGATCCAGTTTTGGTAGAAGTGGGATATTGGATTCGGTGATGCCAGCGGAGCAACGCTGCTGGTGGATGGCTTCGGTGACTCAACCTCTGGCTGGGGTCGTTGGTTGTTCTTGCTTTGGTGGCGGTAAAGGTGGCATGGCTATTGGCGGCACCTCTGACGGTGATAGTGGCAGTGCAGGCGGAGTCGGCGACGGGTCTTTGGCGGCGACAGGGTTGGTGCTCCTAAGGCAAACTGGATATCTTGGTGGGGTTGTGTTCAGTTGGGTTTGGCCCTGGTGTACTAGGGTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

13.02

Weight (kDa)

4.97

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003282)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334151 RchiOBHm_Chr6g0275401
rosa_laevigata	RLG00000012330 RLG00000023103 RLG00000023473 RLG00000023476 RLG00000028751 RLG00000029476
rosa_multiflora	Rmu_co8467563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019700 Rroxscaffold_1G00039360 Rroxscaffold_3G00249990 Rroxscaffold_3G00275150 Rroxscaffold_6G00395480 Rroxscaffold_7G00190930
rosa_rugosa	Rorug03G0305200
rosa_samantha	Rh2AG435100 Rh2DG453400 Rh2DG691400 Rh3AG051100 Rh3BG052300 Rh3BG303700 Rh3CG052000 Rh3DG052700 Rh4AG232800 Rh4AG393900 Rh4BG028000 Rh4DG030700 Rh4DG400900 Rh5AG348100 Rh5AG355400 Rh5DG570200 Rh6AG205300 Rh6BG208300 Rh6BG518000 Rh7AG242500 Rh7AG438800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	32
AccB1I	GGYRCC	1 cut(s)	248
AccB7I	CCANNNNNTGG	1 cut(s)	98
AciI	CCGC	5 cut(s)	146, 222, 246, 279, 302
AclWI	GGATC	2 cut(s)	96, 109
AfaI	GTAC	1 cut(s)	379
AfiI	CCNNNNNNNGG	3 cut(s)	80, 98, 191
AjnI	CCWGG	1 cut(s)	371
Alw21I	GWGCWC	1 cut(s)	321
AlwI	GGATC	2 cut(s)	96, 109
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	2 cut(s)	45, 156
AspS9I	GGNCC	1 cut(s)	369
AsuHPI	GGTGA	3 cut(s)	148, 187, 272
AxyI	CCTNAGG	1 cut(s)	323
BamHI	GGATCC	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	57, 143
BccI	CCATC	3 cut(s)	30, 92, 160
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	373
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	25
BfuAI	ACCTGC	1 cut(s)	32
BisI	GCNGC	4 cut(s)	46, 157, 247, 303
BlsI	GCNGC	4 cut(s)	47, 158, 248, 304
Bme1390I	CCNGG	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	3 cut(s)	103, 250, 387
BmrFI	CCNGG	1 cut(s)	373
BmrI	ACTGGG	1 cut(s)	67
BmsI	GCATC	1 cut(s)	129
BmuI	ACTGGG	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 98, 191
Bse1I	ACTGG	4 cut(s)	62, 92, 105, 337
Bse21I	CCTNAGG	1 cut(s)	323
BseBI	CCWGG	1 cut(s)	373
BseDI	CCNNGG	1 cut(s)	371
BseGI	GGATG	2 cut(s)	41, 171
BseLI	CCNNNNNNNGG	3 cut(s)	80, 98, 191
BseNI	ACTGG	4 cut(s)	62, 92, 105, 337
BseXI	GCAGC	2 cut(s)	57, 143
BseYI	CCCAGC	1 cut(s)	191
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	1 cut(s)	370
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	321
BslI	CCNNNNNNNGG	3 cut(s)	80, 98, 191
BsnI	GGCC	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	1 cut(s)	101
BspACI	CCGC	5 cut(s)	146, 222, 246, 279, 302
BspANI	GGCC	1 cut(s)	370
BspLI	GGNNCC	3 cut(s)	103, 250, 387
BspMAI	CTGCAG	1 cut(s)	29
BspMI	ACCTGC	1 cut(s)	32
BspPI	GGATC	2 cut(s)	96, 109
BspT107I	GGYRCC	1 cut(s)	248
BsrI	ACTGG	4 cut(s)	62, 92, 105, 337
BssECI	CCNNGG	1 cut(s)	371
BssMI	GATC	1 cut(s)	101
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	144, 277
BstDEI	CTNAG	1 cut(s)	323
BstF5I	GGATG	2 cut(s)	41, 171
BstKTI	GATC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	101
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 148, 219, 276, 285, 325
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	371
BstSFI	CTRYAG	1 cut(s)	25
BstV1I	GCAGC	2 cut(s)	57, 143
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
Bsu36I	CCTNAGG	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	41, 171
BtsI	GCAGTG	2 cut(s)	34, 277
BtsIMutI	CAGTG	2 cut(s)	34, 277
BveI	ACCTGC	1 cut(s)	32
Cac8I	GCNNGC	2 cut(s)	144, 277
Cfr13I	GGNCC	1 cut(s)	369
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	1 cut(s)	235
CviJI	RGCY	6 cut(s)	73, 86, 170, 191, 239, 370
CviKI_1	RGCY	6 cut(s)	73, 86, 170, 191, 239, 370
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	1 cut(s)	103
DpnII	GATC	1 cut(s)	101
EciI	GGCGGA	1 cut(s)	294
Eco32I	GATATC	1 cut(s)	338
Eco81I	CCTNAGG	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	371
EcoRV	GATATC	1 cut(s)	338
FaeI	CATG	1 cut(s)	238
FaiI	YATR	1 cut(s)	236
FatI	CATG	1 cut(s)	234
Fnu4HI	GCNGC	4 cut(s)	46, 157, 247, 303
FokI	GGATG	2 cut(s)	48, 178
Fsp4HI	GCNGC	4 cut(s)	46, 157, 247, 303
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	4 cut(s)	46, 157, 247, 303
GsaI	CCCAGC	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	370
Hin1II	CATG	1 cut(s)	238
HinfI	GANTC	3 cut(s)	131, 178, 282
HphI	GGTGA	3 cut(s)	148, 187, 272
Hpy166II	GTNNAC	1 cut(s)	378
Hpy188I	TCNGA	1 cut(s)	256
Hpy8I	GTNNAC	1 cut(s)	378
Hpy99I	CGWCG	2 cut(s)	79, 293
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	2 cut(s)	27, 275
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 148, 219, 276, 285, 325
HpyF3I	CTNAG	1 cut(s)	323
Hsp92II	CATG	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	101
LmnI	GCTCC	2 cut(s)	148, 324
Lsp1109I	GCAGC	2 cut(s)	57, 143
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	1 cut(s)	103
MboI	GATC	1 cut(s)	101
MflI	RGATCY	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	321
MlyI	GAGTC	2 cut(s)	172, 291
MnlI	CCTC	3 cut(s)	28, 195, 262
MspA1I	CMGCKG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	373
MwoI	GCNNNNNNNGC	6 cut(s)	14, 148, 219, 276, 285, 325
NdeII	GATC	1 cut(s)	101
NlaIII	CATG	1 cut(s)	238
NlaIV	GGNNCC	3 cut(s)	103, 250, 387
NmuCI	GTSAC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	131
PflMI	CCANNNNNTGG	1 cut(s)	98
PkrI	GCNGC	4 cut(s)	47, 158, 248, 304
PleI	GAGTC	2 cut(s)	172, 290
PpsI	GAGTC	2 cut(s)	172, 290
Psp6I	CCWGG	1 cut(s)	371
PspFI	CCCAGC	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	3 cut(s)	103, 250, 387
PspPI	GGNCC	1 cut(s)	369
PstI	CTGCAG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	101
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
SatI	GCNGC	4 cut(s)	46, 157, 247, 303
Sau3AI	GATC	1 cut(s)	101
Sau96I	GGNCC	1 cut(s)	369
SchI	GAGTC	2 cut(s)	172, 291
ScrFI	CCNGG	1 cut(s)	373
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	4 cut(s)	26, 187, 232, 254
SfaNI	GCATC	1 cut(s)	129
SfcI	CTRYAG	1 cut(s)	25
SsiI	CCGC	5 cut(s)	146, 222, 246, 279, 302
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	1 cut(s)	371
TaaI	ACNGT	1 cut(s)	260
TaqI	TCGA	1 cut(s)	20
TatI	WGTACW	1 cut(s)	377
TauI	GCSGC	2 cut(s)	249, 305
TfiI	GAWTC	1 cut(s)	131
TscAI	CASTG	2 cut(s)	34, 277
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	2 cut(s)	45, 156
Tsp45I	GTSAC	1 cut(s)	175
TspRI	CASTG	2 cut(s)	34, 277
Van91I	CCANNNNNTGG	1 cut(s)	98
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.