Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003282

Physical Location & Seq

Genomic Coordinates Reverse (-)

61646446 .. 61646928

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG400900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAGGGCAGAGGTCGTCTCGACCTACAGTGGTGGCTGGTTTGGAAGCAAAGACGACTGGTCTGGCATTCTGCCGTCGTCTGGGGCTTTACCAGTTGATGGATGTGATGGAGATCCAGGGGTTGATTTAGGGCTGGTTTGGCCTGAGATTGGAAGCTATCGTGTTGGGATGATTACTCCCTCGTCCAGCACAGCCAGTTTTGGTAGAAGTGGGATATTGGATTCGGTGATGCCAGCGGAGCAACGCTGCTTGTGGATGGCTTCAGCGACGCAACCTCTGGCCAGGGTCGTTGGTCGTTCTTGCTTTGGTGGCGGTAAAGGTGGCATGGCTATCGGTGGCATCTCTGACGGCGATAGAGGCAGTGCAAGTGGAGTCGGCGGCCGGCCTTTGGCCGCGACAGGGTTGGTGCTCCTAGGACGAACTGGATATCTTGGTGGGGCTGTGTTCAGTTTGGTTTGGGCCTGGTGTGCTAAGGTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

16.19

Weight (kDa)

6.15

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003282)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334151 RchiOBHm_Chr6g0275401
rosa_laevigata	RLG00000012330 RLG00000023103 RLG00000023473 RLG00000023476 RLG00000028751 RLG00000029476
rosa_multiflora	Rmu_co8467563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019700 Rroxscaffold_1G00039360 Rroxscaffold_3G00249990 Rroxscaffold_3G00275150 Rroxscaffold_6G00395480 Rroxscaffold_7G00190930
rosa_rugosa	Rorug03G0305200
rosa_samantha	Rh2AG435100 Rh2DG453400 Rh2DG691400 Rh3AG051100 Rh3BG052300 Rh3BG303700 Rh3CG052000 Rh3DG052700 Rh4AG232800 Rh4AG393900 Rh4BG028000 Rh4DG030700 Rh4DG400900 Rh5AG348100 Rh5AG355400 Rh5DG570200 Rh6AG205300 Rh6BG208300 Rh6BG518000 Rh7AG242500 Rh7AG438800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	98
AccII	CGCG	1 cut(s)	395
AciI	CCGC	4 cut(s)	236, 312, 378, 393
AclWI	GGATC	1 cut(s)	107
AcoI	YGGCCR	3 cut(s)	279, 379, 390
AcuI	CTGAAG	1 cut(s)	246
AfiI	CCNNNNNNNGG	5 cut(s)	80, 98, 149, 388, 399
AhdI	GACNNNNNGTC	1 cut(s)	58
AjnI	CCWGG	3 cut(s)	115, 281, 461
AluBI	AGCT	1 cut(s)	156
AluI	AGCT	1 cut(s)	156
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	1 cut(s)	107
AoxI	GGCC	6 cut(s)	140, 279, 379, 383, 390, 459
ApeKI	GCWGC	1 cut(s)	246
AspA2I	CCTAGG	1 cut(s)	412
AspS9I	GGNCC	1 cut(s)	459
AsuHPI	GGTGA	1 cut(s)	238
AvrII	CCTAGG	1 cut(s)	412
BalI	TGGCCA	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	3 cut(s)	92, 101, 250
BceAI	ACGGC	2 cut(s)	58, 364
BcgI	CGANNNNNNTGC	2 cut(s)	313, 347
BciT130I	CCWGG	3 cut(s)	117, 283, 463
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	1 cut(s)	413
BfmI	CTRYAG	1 cut(s)	25
BisI	GCNGC	3 cut(s)	247, 379, 393
BlnI	CCTAGG	1 cut(s)	412
BlsI	GCNGC	3 cut(s)	248, 380, 394
Bme1390I	CCNGG	3 cut(s)	117, 283, 463
BmeRI	GACNNNNNGTC	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	459
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	3 cut(s)	117, 283, 463
BmsI	GCATC	2 cut(s)	219, 348
BplI	GAGNNNNNCTC	1 cut(s)	34
Bpu10I	CCTNAGC	1 cut(s)	471
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	3 cut(s)	116, 282, 412
Bsc4I	CCNNNNNNNGG	5 cut(s)	80, 98, 149, 388, 399
Bse118I	RCCGGY	1 cut(s)	381
Bse1I	ACTGG	4 cut(s)	62, 92, 195, 427
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	3 cut(s)	117, 283, 463
BseDI	CCNNGG	3 cut(s)	116, 282, 412
BseGI	GGATG	3 cut(s)	107, 174, 261
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	5 cut(s)	80, 98, 149, 388, 399
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	4 cut(s)	62, 92, 195, 427
BseX3I	CGGCCG	1 cut(s)	379
BseXI	GCAGC	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	395
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	6 cut(s)	142, 281, 381, 385, 392, 461
BsiEI	CGRYCG	1 cut(s)	382
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	382
BslI	CCNNNNNNNGG	5 cut(s)	80, 98, 149, 388, 399
BsmAI	GTCTC	1 cut(s)	22
BsmBI	CGTCTC	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	66
BsnI	GGCC	6 cut(s)	142, 281, 381, 385, 392, 461
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	4 cut(s)	236, 312, 378, 393
BspANI	GGCC	6 cut(s)	142, 281, 381, 385, 392, 461
BspCNI	CTCAG	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	1 cut(s)	477
BspPI	GGATC	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	381
BsrI	ACTGG	4 cut(s)	62, 92, 195, 427
BssAI	RCCGGY	1 cut(s)	381
BssECI	CCNNGG	3 cut(s)	116, 282, 412
BssMI	GATC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	412
Bst2UI	CCWGG	3 cut(s)	117, 283, 463
Bst4CI	ACNGT	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	234, 383
BstDEI	CTNAG	2 cut(s)	144, 471
BstF5I	GGATG	3 cut(s)	107, 174, 261
BstFNI	CGCG	1 cut(s)	395
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	112
BstMCI	CGRYCG	1 cut(s)	382
BstMWI	GCNNNNNNNGC	5 cut(s)	139, 238, 309, 357, 467
BstNI	CCWGG	3 cut(s)	117, 283, 463
BstSCI	CCNGG	3 cut(s)	115, 281, 461
BstSFI	CTRYAG	1 cut(s)	25
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BstZI	CGGCCG	1 cut(s)	379
BsuRI	GGCC	6 cut(s)	142, 281, 381, 385, 392, 461
BtsCI	GGATG	3 cut(s)	107, 174, 261
BtsI	GCAGTG	1 cut(s)	367
BtsIMutI	CAGTG	2 cut(s)	34, 367
Cac8I	GCNNGC	2 cut(s)	234, 383
Cfr10I	RCCGGY	1 cut(s)	381
Cfr13I	GGNCC	1 cut(s)	459
CseI	GACGC	1 cut(s)	277
CviAII	CATG	1 cut(s)	325
DdeI	CTNAG	2 cut(s)	144, 471
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
DriI	GACNNNNNGTC	1 cut(s)	58
EaeI	YGGCCR	3 cut(s)	279, 379, 390
EagI	CGGCCG	1 cut(s)	379
Eam1105I	GACNNNNNGTC	1 cut(s)	58
EclXI	CGGCCG	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	412
Eco32I	GATATC	1 cut(s)	428
Eco52I	CGGCCG	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	246
EcoRII	CCWGG	3 cut(s)	115, 281, 461
EcoRV	GATATC	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	412
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	1 cut(s)	328
FaiI	YATR	1 cut(s)	326
FatI	CATG	1 cut(s)	324
Fnu4HI	GCNGC	3 cut(s)	247, 379, 393
FokI	GGATG	3 cut(s)	114, 181, 268
FseI	GGCCGGCC	1 cut(s)	385
Fsp4HI	GCNGC	3 cut(s)	247, 379, 393
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	3 cut(s)	247, 379, 393
HaeIII	GGCC	6 cut(s)	142, 281, 381, 385, 392, 461
HapII	CCGG	1 cut(s)	382
HgaI	GACGC	1 cut(s)	277
Hin1II	CATG	1 cut(s)	328
HinfI	GANTC	2 cut(s)	221, 372
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	1 cut(s)	238
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	1 cut(s)	19
Hpy99I	CGWCG	2 cut(s)	79, 271
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4V	TGCA	1 cut(s)	365
HpyF10VI	GCNNNNNNNGC	5 cut(s)	139, 238, 309, 357, 467
HpyF3I	CTNAG	2 cut(s)	144, 471
Hsp92II	CATG	1 cut(s)	328
KroI	GCCGGC	1 cut(s)	381
KroNI	GCCGGC	1 cut(s)	383
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	2 cut(s)	238, 414
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	2 cut(s)	219, 348
MaeI	CTAG	1 cut(s)	413
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	411
MlsI	TGGCCA	1 cut(s)	281
MluNI	TGGCCA	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	381
MnlI	CCTC	4 cut(s)	4, 190, 285, 350
Mox20I	TGGCCA	1 cut(s)	281
MroNI	GCCGGC	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	281
Msp20I	TGGCCA	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	1 cut(s)	382
MspR9I	CCNGG	3 cut(s)	117, 283, 463
Mva1269I	GAATGC	1 cut(s)	66
MvaI	CCWGG	3 cut(s)	117, 283, 463
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	5 cut(s)	139, 238, 309, 357, 467
NaeI	GCCGGC	1 cut(s)	383
NdeII	GATC	1 cut(s)	112
NgoMIV	GCCGGC	1 cut(s)	381
NlaIII	CATG	1 cut(s)	328
NlaIV	GGNNCC	1 cut(s)	477
PctI	GAATGC	1 cut(s)	66
PdiI	GCCGGC	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	98
PkrI	GCNGC	3 cut(s)	248, 380, 394
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
Psp6I	CCWGG	3 cut(s)	115, 281, 461
PspGI	CCWGG	3 cut(s)	115, 281, 461
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	459
PsuI	RGATCY	1 cut(s)	112
RigI	GGCCGGCC	1 cut(s)	385
SatI	GCNGC	3 cut(s)	247, 379, 393
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	459
SchI	GAGTC	1 cut(s)	381
ScrFI	CCNGG	3 cut(s)	117, 283, 463
SduI	GDGCHC	1 cut(s)	411
SetI	ASST	6 cut(s)	15, 26, 158, 277, 322, 477
SfaNI	GCATC	2 cut(s)	219, 348
SfcI	CTRYAG	1 cut(s)	25
SsiI	CCGC	4 cut(s)	236, 312, 378, 393
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	3 cut(s)	115, 281, 461
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	1 cut(s)	29
TaqI	TCGA	1 cut(s)	20
TauI	GCSGC	2 cut(s)	381, 395
TfiI	GAWTC	1 cut(s)	221
TscAI	CASTG	2 cut(s)	34, 367
TseI	GCWGC	1 cut(s)	246
TspRI	CASTG	2 cut(s)	34, 367
Van91I	CCANNNNNTGG	1 cut(s)	98
XmaJI	CCTAGG	1 cut(s)	412
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.