Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003282

Physical Location & Seq

Genomic Coordinates Reverse (-)

18128382 .. 18128998

Gene Structure 617 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023103

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCTTTGCCCTAGCCGCCGCTTGCTAGGTTCCCAATGGCGCTCTCTTGCGTCAATCCAAATCGGTGCTATTTCTTTTCCTCGAGAGGAGAAGAATGTATGCCACCCTAAGAGCGTCGAGAATGCGCCTCTGCAGGCCGAACTTGTGCGCCGATCTTCAAAGGACGTCATTGTTGTGCGTCCAACAACAAGTGAAGTGCGATCAAAGGATCTCTTCCGTCCCCAAAACAAGGCGGTGGCGATCGGATTTTCAAGCAATGCAGCAATTCGGCTTCGAATTGCTGGAGCTGTGAGGTCAAGCCTTGGTCTCACCATAGAGATGTTGTGTCCAGATGCAGTGAGAAGACCATGGAGGTGGTGCATCGCGGCAATGCTTGGTGAGGGTACTAATGCTGATCGGAAGGTGGTAGCAAGGTTGGAGGATGTGCCTAGAGTGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.21

Weight (kDa)

10.75

Isoelectric Point (pI)

65.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003282)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334151 RchiOBHm_Chr6g0275401
rosa_laevigata	RLG00000012330 RLG00000023103 RLG00000023473 RLG00000023476 RLG00000028751 RLG00000029476
rosa_multiflora	Rmu_co8467563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019700 Rroxscaffold_1G00039360 Rroxscaffold_3G00249990 Rroxscaffold_3G00275150 Rroxscaffold_6G00395480 Rroxscaffold_7G00190930
rosa_rugosa	Rorug03G0305200
rosa_samantha	Rh2AG435100 Rh2DG453400 Rh2DG691400 Rh3AG051100 Rh3BG052300 Rh3BG303700 Rh3CG052000 Rh3DG052700 Rh4AG232800 Rh4AG393900 Rh4BG028000 Rh4DG030700 Rh4DG400900 Rh5AG348100 Rh5AG355400 Rh5DG570200 Rh6AG205300 Rh6BG208300 Rh6BG518000 Rh7AG242500 Rh7AG438800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	168
AccII	CGCG	1 cut(s)	365
AciI	CCGC	4 cut(s)	16, 19, 233, 365
AclWI	GGATC	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	1 cut(s)	385
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	159, 252
AluBI	AGCT	1 cut(s)	287
AluI	AGCT	1 cut(s)	287
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	1 cut(s)	311
Alw44I	GTGCAC	1 cut(s)	434
AlwI	GGATC	1 cut(s)	216
Ama87I	CYCGRG	1 cut(s)	81
AoxI	GGCC	1 cut(s)	135
ApaLI	GTGCAC	1 cut(s)	434
ApeKI	GCWGC	1 cut(s)	260
AspLEI	GCGC	3 cut(s)	42, 127, 150
AsuHPI	GGTGA	2 cut(s)	301, 389
AsuII	TTCGAA	1 cut(s)	274
AvaI	CYCGRG	1 cut(s)	81
BaeGI	GKGCMC	1 cut(s)	438
BbsI	GAAGAC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	4 cut(s)	12, 26, 429, 439
BfmI	CTRYAG	1 cut(s)	131
BfoI	RGCGCY	1 cut(s)	43
BisI	GCNGC	4 cut(s)	16, 19, 261, 366
BlsI	GCNGC	4 cut(s)	17, 20, 262, 367
BmeT110I	CYCGRG	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	31
BmsI	GCATC	2 cut(s)	322, 369
BpiI	GAAGAC	1 cut(s)	349
BpmI	CTGGAG	1 cut(s)	303
Bpu14I	TTCGAA	1 cut(s)	274
BsaHI	GRCGYC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	301, 347
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse3DI	GCAATG	2 cut(s)	262, 375
BseDI	CCNNGG	2 cut(s)	301, 347
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	2 cut(s)	262, 375
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	438
BseXI	GCAGC	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	365
Bsh1285I	CGRYCG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	137
BsiEI	CGRYCG	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	438
BsiHKCI	CYCGRG	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	204
BsmI	GAATGC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	137
Bso31I	GGTCTC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	81
Bsp119I	TTCGAA	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp143I	GATC	5 cut(s)	152, 200, 208, 240, 394
Bsp19I	CCATGG	1 cut(s)	347
BspACI	CCGC	4 cut(s)	16, 19, 233, 365
BspANI	GGCC	1 cut(s)	137
BspFNI	CGCG	1 cut(s)	365
BspLI	GGNNCC	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	135
BspPI	GGATC	1 cut(s)	216
BspT104I	TTCGAA	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	311
BsrDI	GCAATG	2 cut(s)	262, 375
BssECI	CCNNGG	2 cut(s)	301, 347
BssMI	GATC	5 cut(s)	152, 200, 208, 240, 394
BssNI	GRCGYC	1 cut(s)	165
BssT1I	CCWWGG	2 cut(s)	301, 347
Bst6I	CTCTTC	1 cut(s)	218
BstACI	GRCGYC	1 cut(s)	165
BstBI	TTCGAA	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	23, 135
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	427
BstFNI	CGCG	1 cut(s)	365
BstH2I	RGCGCY	1 cut(s)	43
BstHHI	GCGC	3 cut(s)	42, 127, 150
BstKTI	GATC	5 cut(s)	155, 203, 211, 243, 397
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	5 cut(s)	152, 200, 208, 240, 394
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 433
BstSFI	CTRYAG	1 cut(s)	131
BstSLI	GKGCMC	1 cut(s)	438
BstUI	CGCG	1 cut(s)	365
BstV1I	GCAGC	1 cut(s)	272
BstV2I	GAAGAC	1 cut(s)	349
BstX2I	RGATCY	1 cut(s)	208
BstXI	CCANNNNNNTGG	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	137
BtgI	CCRYGG	1 cut(s)	347
BtgZI	GCGATG	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	427
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	2 cut(s)	23, 135
CfoI	GCGC	3 cut(s)	42, 127, 150
CseI	GACGC	3 cut(s)	39, 103, 167
Csp6I	GTAC	1 cut(s)	384
CviAII	CATG	1 cut(s)	348
CviJI	RGCY	5 cut(s)	15, 137, 271, 287, 300
CviKI_1	RGCY	5 cut(s)	15, 137, 271, 287, 300
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	5 cut(s)	154, 202, 210, 242, 396
DpnII	GATC	5 cut(s)	152, 200, 208, 240, 394
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco130I	CCWWGG	2 cut(s)	301, 347
Eco31I	GGTCTC	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	81
EcoT14I	CCWWGG	2 cut(s)	301, 347
ErhI	CCWWGG	2 cut(s)	301, 347
FaeI	CATG	1 cut(s)	351
FaiI	YATR	3 cut(s)	100, 314, 349
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	1 cut(s)	347
Fnu4HI	GCNGC	4 cut(s)	16, 19, 261, 366
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	4 cut(s)	16, 19, 261, 366
FspBI	CTAG	4 cut(s)	12, 26, 429, 439
GlaI	GCGC	3 cut(s)	41, 126, 149
GluI	GCNGC	4 cut(s)	16, 19, 261, 366
GsuI	CTGGAG	1 cut(s)	303
HaeII	RGCGCY	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	137
HgaI	GACGC	3 cut(s)	39, 103, 167
HhaI	GCGC	3 cut(s)	42, 127, 150
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	1 cut(s)	351
Hin6I	GCGC	3 cut(s)	40, 125, 148
HinP1I	GCGC	3 cut(s)	40, 125, 148
HphI	GGTGA	2 cut(s)	301, 389
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	2 cut(s)	245, 399
Hpy188III	TCNNGA	3 cut(s)	83, 118, 329
Hpy8I	GTNNAC	1 cut(s)	436
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	394
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	5 cut(s)	133, 260, 335, 360, 436
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 433
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	165
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	351
HspAI	GCGC	3 cut(s)	40, 125, 148
Kzo9I	GATC	5 cut(s)	152, 200, 208, 240, 394
LmnI	GCTCC	1 cut(s)	284
LpnPI	CCDG	3 cut(s)	119, 267, 342
Lsp1109I	GCAGC	1 cut(s)	272
LweI	GCATC	2 cut(s)	322, 369
MaeI	CTAG	4 cut(s)	12, 26, 429, 439
MaeII	ACGT	1 cut(s)	165
MalI	GATC	5 cut(s)	154, 202, 210, 242, 396
MboI	GATC	5 cut(s)	152, 200, 208, 240, 394
MboII	GAAGA	4 cut(s)	103, 147, 205, 354
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	438
MluCI	AATT	2 cut(s)	264, 276
MmeI	TCCRAC	2 cut(s)	206, 396
MnlI	CCTC	7 cut(s)	79, 90, 138, 285, 345, 373, 412
MslI	CAYNNNNRTG	3 cut(s)	173, 317, 352
Mva1269I	GAATGC	1 cut(s)	127
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	2 cut(s)	15, 433
NcoI	CCATGG	1 cut(s)	347
NdeII	GATC	5 cut(s)	152, 200, 208, 240, 394
NlaIII	CATG	1 cut(s)	351
NlaIV	GGNNCC	1 cut(s)	31
NspV	TTCGAA	1 cut(s)	274
PaeR7I	CTCGAG	1 cut(s)	81
PctI	GAATGC	1 cut(s)	127
PkrI	GCNGC	4 cut(s)	17, 20, 262, 367
Ple19I	CGATCG	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	31
PstI	CTGCAG	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	208
PvuI	CGATCG	1 cut(s)	243
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
RseI	CAYNNNNRTG	3 cut(s)	173, 317, 352
SatI	GCNGC	4 cut(s)	16, 19, 261, 366
Sau3AI	GATC	5 cut(s)	152, 200, 208, 240, 394
SduI	GDGCHC	1 cut(s)	438
SetI	ASST	7 cut(s)	31, 168, 289, 296, 356, 405, 416
SfaNI	GCATC	2 cut(s)	322, 369
SfcI	CTRYAG	1 cut(s)	131
Sfr274I	CTCGAG	1 cut(s)	81
SfuI	TTCGAA	1 cut(s)	274
SlaI	CTCGAG	1 cut(s)	81
SmiMI	CAYNNNNRTG	3 cut(s)	173, 317, 352
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	2 cut(s)	264, 276
SsiI	CCGC	4 cut(s)	16, 19, 233, 365
SspMI	CTAG	4 cut(s)	12, 26, 429, 439
StyI	CCWWGG	2 cut(s)	301, 347
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	3 cut(s)	82, 117, 274
TasI	AATT	2 cut(s)	264, 276
TauI	GCSGC	3 cut(s)	18, 21, 368
TscAI	CASTG	1 cut(s)	342
TseI	GCWGC	1 cut(s)	260
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	342
VneI	GTGCAC	1 cut(s)	434
XhoI	CTCGAG	1 cut(s)	81
XspI	CTAG	4 cut(s)	12, 26, 429, 439
ZraI	GACGTC	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.