Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003282

Physical Location & Seq

Genomic Coordinates Forward (+)

24358110 .. 24359754

Gene Structure 1645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023473

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGATAACAGTGCAGGCCTAGGCTTGTGGGTTCTCTTCTTTCTCTCTTTGACCAGTGCGAGCCCGAACGTGGAGAGAGCAGAGCTTTCTGATTCTGTTGGGATGGACTGGCTGCGTTTCTTTGACCGCGGTGGTGGATTGAGGTCTGGAAGCGAATGGCTGGTTTTAATGGCCGACTACTGGCTTTGTACTTTTCGGCCCAAGGTTTGTGGTGGATGCATTGGCCTCGACGATCGACGAGCTGGCTGTTATGACACCAGTGATGGTGCTCAGGGTAGCGGGATTGATGCGTTTGCTGCGCAGTTGCAGGCCAGGGCTGATACCAGTGGCTGGGGTAGATATGGTTCTAACATTGCAGTCTCTTCGGCGGTGATCAACGGCGGAGGCGGCGACTTGATTGGCTGGGGTGGAAGTGAAGTGTCCTTAGTGATTTTGATTAATTGGGCCAACTGGGCCTGGTATTGGTTGGAGAGTCTGTTACAGGGCTGGTTGTGGGTGGGCGGAGTCCTAACTTTTGTTAAGGCCTTGTCGGCCTTTGAGATGAGAGTCGAGAGCGAAAGCGTGCCCTCTCAAAACCCTAGCGCCGCCTCGTGTAGGCTGCTTCCAGGGAGGTCTTCGGCACCTCCAGTTCCAGGTTCCTCTCAACAATTATGCCTTGCGGCGGATCGGTTCCATTCTCGGTGCAAGGAATGGTGGGTTGCGGTTTGTGTAGCGGCGATCCTCTTCATTCTCCGGCCGAGACGTAAACGACTTCGTGACCATAGTCTAAGGAGGAGATCTGGGATCTGGTATGGATCGGGGCATCATTCCTCTAGGGTTTGGCAGGCCTTTGATGGCGGGCCAAGGTTGCAGGTGGTGGCGCTGCAGAGCGGTGGCAGTGTAACGTCCCGGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

299

Amino Acids

32.44

Weight (kDa)

8.87

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003282)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334151 RchiOBHm_Chr6g0275401
rosa_laevigata	RLG00000012330 RLG00000023103 RLG00000023473 RLG00000023476 RLG00000028751 RLG00000029476
rosa_multiflora	Rmu_co8467563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019700 Rroxscaffold_1G00039360 Rroxscaffold_3G00249990 Rroxscaffold_3G00275150 Rroxscaffold_6G00395480 Rroxscaffold_7G00190930
rosa_rugosa	Rorug03G0305200
rosa_samantha	Rh2AG435100 Rh2DG453400 Rh2DG691400 Rh3AG051100 Rh3BG052300 Rh3BG303700 Rh3CG052000 Rh3DG052700 Rh4AG232800 Rh4AG393900 Rh4BG028000 Rh4DG030700 Rh4DG400900 Rh5AG348100 Rh5AG355400 Rh5DG570200 Rh6AG205300 Rh6BG208300 Rh6BG518000 Rh7AG242500 Rh7AG438800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	841
Acc16I	TGCGCA	1 cut(s)	300
Acc36I	ACCTGC	1 cut(s)	841
AccB1I	GGYRCC	1 cut(s)	619
AccB7I	CCANNNNNTGG	1 cut(s)	330
AccBSI	CCGCTC	1 cut(s)	870
AccII	CGCG	1 cut(s)	129
AclWI	GGATC	4 cut(s)	672, 712, 791, 802
AcoI	YGGCCR	2 cut(s)	171, 734
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	7 cut(s)	70, 180, 330, 462, 594, 632, 661
AjnI	CCWGG	4 cut(s)	311, 455, 604, 631
AluBI	AGCT	2 cut(s)	85, 242
AluI	AGCT	2 cut(s)	85, 242
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	2 cut(s)	364, 733
AlwI	GGATC	4 cut(s)	672, 712, 791, 802
AlwNI	CAGNNNCTG	1 cut(s)	330
ApeKI	GCWGC	4 cut(s)	112, 296, 598, 862
AseI	ATTAAT	1 cut(s)	438
AspA2I	CCTAGG	1 cut(s)	19
AspLEI	GCGC	3 cut(s)	301, 584, 862
AspS9I	GGNCC	5 cut(s)	198, 444, 453, 839, 891
AsuC2I	CCSGG	1 cut(s)	889
AsuHPI	GGTGA	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	891
AvrII	CCTAGG	1 cut(s)	19
BaeGI	GKGCMC	1 cut(s)	567
BanI	GGYRCC	1 cut(s)	619
BanII	GRGCYC	1 cut(s)	65
BauI	CACGAG	1 cut(s)	589
BbsI	GAAGAC	1 cut(s)	606
Bbv12I	GWGCWC	1 cut(s)	271
BbvI	GCAGC	4 cut(s)	99, 283, 585, 849
BccI	CCATC	3 cut(s)	97, 257, 827
BceAI	ACGGC	1 cut(s)	394
BcgI	CGANNNNNNTGC	4 cut(s)	208, 242, 345, 379
BciT130I	CCWGG	4 cut(s)	313, 457, 606, 633
BclI	TGATCA	1 cut(s)	372
BcnI	CCSGG	1 cut(s)	889
BcoDI	GTCTC	2 cut(s)	364, 733
BfaI	CTAG	3 cut(s)	20, 579, 813
BfmI	CTRYAG	1 cut(s)	863
BfoI	RGCGCY	2 cut(s)	585, 863
BfuAI	ACCTGC	1 cut(s)	841
BglI	GCCNNNNNGGC	2 cut(s)	452, 530
BglII	AGATCT	1 cut(s)	776
BisI	GCNGC	8 cut(s)	113, 297, 388, 585, 599, 660, 714, 863
BlnI	CCTAGG	1 cut(s)	19
BlsI	GCNGC	8 cut(s)	114, 298, 389, 586, 600, 661, 715, 864
Bme1390I	CCNGG	5 cut(s)	313, 457, 606, 633, 889
Bme18I	GGWCC	1 cut(s)	891
BmgT120I	GGNCC	5 cut(s)	198, 444, 453, 839, 891
BmiI	GGNNCC	3 cut(s)	621, 637, 671
BmrFI	CCNGG	5 cut(s)	313, 457, 606, 633, 889
BmrI	ACTGGG	1 cut(s)	460
BmsI	GCATC	3 cut(s)	206, 277, 811
BmuI	ACTGGG	1 cut(s)	460
BoxI	GACNNNNGTC	1 cut(s)	762
BpiI	GAAGAC	1 cut(s)	606
BpmI	CTGGAG	1 cut(s)	609
Bpu10I	CCTNAGC	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	889
BsaJI	CCNNGG	6 cut(s)	19, 127, 201, 312, 605, 842
BsaXI	ACNNNNNCTCC	2 cut(s)	461, 491
Bsc4I	CCNNNNNNNGG	7 cut(s)	70, 180, 330, 462, 594, 632, 661
Bse1I	ACTGG	7 cut(s)	54, 113, 185, 258, 324, 455, 626
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	4 cut(s)	313, 457, 606, 633
BseDI	CCNNGG	6 cut(s)	19, 127, 201, 312, 605, 842
BseGI	GGATG	2 cut(s)	108, 221
BseLI	CCNNNNNNNGG	7 cut(s)	70, 180, 330, 462, 594, 632, 661
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	7 cut(s)	54, 113, 185, 258, 324, 455, 626
BseRI	GAGGAG	1 cut(s)	787
BseSI	GKGCMC	1 cut(s)	567
BseX3I	CGGCCG	1 cut(s)	734
BseXI	GCAGC	4 cut(s)	99, 283, 585, 849
BseYI	CCCAGC	2 cut(s)	330, 402
BsgI	GTGCAG	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	129
Bsh1285I	CGRYCG	2 cut(s)	235, 737
BshNI	GGYRCC	1 cut(s)	619
BsiEI	CGRYCG	2 cut(s)	235, 737
BsiHKAI	GWGCWC	1 cut(s)	271
BsiSI	CCGG	2 cut(s)	733, 889
BslFI	GGGAC	1 cut(s)	871
BslI	CCNNNNNNNGG	7 cut(s)	70, 180, 330, 462, 594, 632, 661
BsmAI	GTCTC	2 cut(s)	364, 733
BsmBI	CGTCTC	1 cut(s)	733
BsmFI	GGGAC	1 cut(s)	871
Bsp1286I	GDGCHC	3 cut(s)	65, 271, 567
Bsp143I	GATC	7 cut(s)	232, 372, 664, 717, 776, 783, 794
BspCNI	CTCAG	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	3 cut(s)	621, 637, 671
BspMAI	CTGCAG	1 cut(s)	867
BspMI	ACCTGC	1 cut(s)	841
BspPI	GGATC	4 cut(s)	672, 712, 791, 802
BspT107I	GGYRCC	1 cut(s)	619
BsrBI	CCGCTC	1 cut(s)	870
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	7 cut(s)	54, 113, 185, 258, 324, 455, 626
BssECI	CCNNGG	6 cut(s)	19, 127, 201, 312, 605, 842
BssMI	GATC	7 cut(s)	232, 372, 664, 717, 776, 783, 794
BssSI	CACGAG	1 cut(s)	589
BssT1I	CCWWGG	3 cut(s)	19, 201, 842
Bst2BI	CACGAG	1 cut(s)	589
Bst2UI	CCWGG	4 cut(s)	313, 457, 606, 633
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	3 cut(s)	41, 367, 728
BstC8I	GCNNGC	7 cut(s)	16, 61, 244, 309, 563, 825, 839
BstDEI	CTNAG	3 cut(s)	270, 424, 767
BstDSI	CCRYGG	1 cut(s)	127
BstENI	CCTNNNNNAGG	1 cut(s)	592
BstF5I	GGATG	2 cut(s)	108, 221
BstFNI	CGCG	1 cut(s)	129
BstH2I	RGCGCY	2 cut(s)	585, 863
BstHHI	GCGC	3 cut(s)	301, 584, 862
BstKTI	GATC	7 cut(s)	235, 375, 667, 720, 779, 786, 797
BstMAI	GTCTC	2 cut(s)	364, 733
BstMBI	GATC	7 cut(s)	232, 372, 664, 717, 776, 783, 794
BstMCI	CGRYCG	2 cut(s)	235, 737
BstMWI	GCNNNNNNNGC	5 cut(s)	296, 387, 452, 530, 847
BstNI	CCWGG	4 cut(s)	313, 457, 606, 633
BstPAI	GACNNNNGTC	1 cut(s)	762
BstSCI	CCNGG	5 cut(s)	311, 455, 604, 631, 887
BstSFI	CTRYAG	1 cut(s)	863
BstSLI	GKGCMC	1 cut(s)	567
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	4 cut(s)	99, 283, 585, 849
BstV2I	GAAGAC	1 cut(s)	606
BstX2I	RGATCY	2 cut(s)	776, 783
BstYI	RGATCY	2 cut(s)	776, 783
BstZI	CGGCCG	1 cut(s)	734
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	108, 221
BtsI	GCAGTG	1 cut(s)	883
BtsIMutI	CAGTG	5 cut(s)	16, 61, 265, 331, 883
BveI	ACCTGC	1 cut(s)	841
Cac8I	GCNNGC	7 cut(s)	16, 61, 244, 309, 563, 825, 839
CaiI	CAGNNNCTG	1 cut(s)	330
CfoI	GCGC	3 cut(s)	301, 584, 862
Cfr13I	GGNCC	5 cut(s)	198, 444, 453, 839, 891
Cfr42I	CCGCGG	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	189
CspCI	CAANNNNNGTGG	2 cut(s)	190, 225
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	3 cut(s)	270, 424, 767
DpnI	GATC	7 cut(s)	234, 374, 666, 719, 778, 785, 796
DpnII	GATC	7 cut(s)	232, 372, 664, 717, 776, 783, 794
EaeI	YGGCCR	2 cut(s)	171, 734
EagI	CGGCCG	1 cut(s)	734
Eam1104I	CTCTTC	3 cut(s)	41, 367, 728
EarI	CTCTTC	3 cut(s)	41, 367, 728
EciI	GGCGGA	3 cut(s)	396, 516, 677
EclXI	CGGCCG	1 cut(s)	734
Eco130I	CCWWGG	3 cut(s)	19, 201, 842
Eco147I	AGGCCT	3 cut(s)	18, 524, 827
Eco24I	GRGCYC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	891
Eco52I	CGGCCG	1 cut(s)	734
EcoNI	CCTNNNNNAGG	1 cut(s)	592
EcoRII	CCWGG	4 cut(s)	311, 455, 604, 631
EcoT14I	CCWWGG	3 cut(s)	19, 201, 842
EcoT22I	ATGCAT	1 cut(s)	221
EcoT38I	GRGCYC	1 cut(s)	65
ErhI	CCWWGG	3 cut(s)	19, 201, 842
Esp3I	CGTCTC	1 cut(s)	733
FaiI	YATR	5 cut(s)	252, 342, 652, 762, 792
FaqI	GGGAC	1 cut(s)	871
FauI	CCCGC	2 cut(s)	272, 830
FbaI	TGATCA	1 cut(s)	372
Fnu4HI	GCNGC	8 cut(s)	113, 297, 388, 585, 599, 660, 714, 863
FokI	GGATG	2 cut(s)	115, 228
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	8 cut(s)	113, 297, 388, 585, 599, 660, 714, 863
FspBI	CTAG	3 cut(s)	20, 579, 813
FspI	TGCGCA	1 cut(s)	300
GlaI	GCGC	3 cut(s)	300, 583, 861
GluI	GCNGC	8 cut(s)	113, 297, 388, 585, 599, 660, 714, 863
GsaI	CCCAGC	2 cut(s)	334, 406
GsuI	CTGGAG	1 cut(s)	609
HaeII	RGCGCY	2 cut(s)	585, 863
HapII	CCGG	2 cut(s)	733, 889
HhaI	GCGC	3 cut(s)	301, 584, 862
Hin6I	GCGC	3 cut(s)	299, 582, 860
HinP1I	GCGC	3 cut(s)	299, 582, 860
HinfI	GANTC	4 cut(s)	92, 472, 504, 546
HpaII	CCGG	2 cut(s)	733, 889
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	1 cut(s)	746
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	3 cut(s)	147, 550, 755
Hpy8I	GTNNAC	1 cut(s)	746
Hpy99I	CGWCG	2 cut(s)	233, 240
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	3 cut(s)	69, 742, 884
HpyCH4V	TGCA	7 cut(s)	14, 219, 307, 356, 684, 850, 865
HpyF10VI	GCNNNNNNNGC	5 cut(s)	296, 387, 452, 530, 847
HpyF3I	CTNAG	3 cut(s)	270, 424, 767
HpySE526I	ACGT	3 cut(s)	69, 742, 884
HspAI	GCGC	3 cut(s)	299, 582, 860
Ksp22I	TGATCA	1 cut(s)	372
KspI	CCGCGG	1 cut(s)	130
Kzo9I	GATC	7 cut(s)	232, 372, 664, 717, 776, 783, 794
Lsp1109I	GCAGC	4 cut(s)	99, 283, 585, 849
LweI	GCATC	3 cut(s)	206, 277, 811
MaeI	CTAG	3 cut(s)	20, 579, 813
MaeII	ACGT	3 cut(s)	69, 742, 884
MaeIII	GTNAC	3 cut(s)	477, 755, 880
MalI	GATC	7 cut(s)	234, 374, 666, 719, 778, 785, 796
MbiI	CCGCTC	1 cut(s)	870
MboI	GATC	7 cut(s)	232, 372, 664, 717, 776, 783, 794
MboII	GAAGA	4 cut(s)	28, 354, 606, 715
MflI	RGATCY	2 cut(s)	776, 783
MhlI	GDGCHC	3 cut(s)	65, 271, 567
MluCI	AATT	2 cut(s)	439, 647
MlyI	GAGTC	3 cut(s)	481, 513, 555
MmeI	TCCRAC	1 cut(s)	447
Mph1103I	ATGCAT	1 cut(s)	221
MseI	TTAA	3 cut(s)	167, 438, 519
MspA1I	CMGCKG	1 cut(s)	129
MspI	CCGG	2 cut(s)	733, 889
MspR9I	CCNGG	5 cut(s)	313, 457, 606, 633, 889
MvaI	CCWGG	4 cut(s)	313, 457, 606, 633
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	5 cut(s)	296, 387, 452, 530, 847
NciI	CCSGG	1 cut(s)	889
NdeII	GATC	7 cut(s)	232, 372, 664, 717, 776, 783, 794
NlaIV	GGNNCC	3 cut(s)	621, 637, 671
NmeAIII	GCCGAG	1 cut(s)	762
NmuCI	GTSAC	1 cut(s)	755
NsbI	TGCGCA	1 cut(s)	300
NsiI	ATGCAT	1 cut(s)	221
PaqCI	CACCTGC	1 cut(s)	841
PceI	AGGCCT	3 cut(s)	18, 524, 827
PfeI	GAWTC	1 cut(s)	92
PflMI	CCANNNNNTGG	1 cut(s)	330
PfoI	TCCNGGA	1 cut(s)	887
PkrI	GCNGC	8 cut(s)	114, 298, 389, 586, 600, 661, 715, 864
Ple19I	CGATCG	1 cut(s)	235
PleI	GAGTC	3 cut(s)	480, 512, 554
PpsI	GAGTC	3 cut(s)	480, 512, 554
PshAI	GACNNNNGTC	1 cut(s)	762
PshBI	ATTAAT	1 cut(s)	438
Psp6I	CCWGG	4 cut(s)	311, 455, 604, 631
PspFI	CCCAGC	2 cut(s)	330, 402
PspGI	CCWGG	4 cut(s)	311, 455, 604, 631
PspN4I	GGNNCC	3 cut(s)	621, 637, 671
PspPI	GGNCC	5 cut(s)	198, 444, 453, 839, 891
PsrI	GAACNNNNNNTAC	2 cut(s)	328, 360
PstI	CTGCAG	1 cut(s)	867
PstNI	CAGNNNCTG	1 cut(s)	330
PsuI	RGATCY	2 cut(s)	776, 783
PvuI	CGATCG	1 cut(s)	235
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
SacII	CCGCGG	1 cut(s)	130
SaqAI	TTAA	3 cut(s)	167, 438, 519
SatI	GCNGC	8 cut(s)	113, 297, 388, 585, 599, 660, 714, 863
Sau3AI	GATC	7 cut(s)	232, 372, 664, 717, 776, 783, 794
Sau96I	GGNCC	5 cut(s)	198, 444, 453, 839, 891
SchI	GAGTC	3 cut(s)	481, 513, 555
ScrFI	CCNGG	5 cut(s)	313, 457, 606, 633, 889
SduI	GDGCHC	3 cut(s)	65, 271, 567
SfaNI	GCATC	3 cut(s)	206, 277, 811
SfcI	CTRYAG	1 cut(s)	863
SfiI	GGCCNNNNNGGCC	2 cut(s)	452, 530
Sfr303I	CCGCGG	1 cut(s)	130
SgrBI	CCGCGG	1 cut(s)	130
SinI	GGWCC	1 cut(s)	891
Sse9I	AATT	2 cut(s)	439, 647
SseBI	AGGCCT	3 cut(s)	18, 524, 827
SspMI	CTAG	3 cut(s)	20, 579, 813
StuI	AGGCCT	3 cut(s)	18, 524, 827
StyD4I	CCNGG	5 cut(s)	311, 455, 604, 631, 887
StyI	CCWWGG	3 cut(s)	19, 201, 842
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	3 cut(s)	72, 745, 887
TaqI	TCGA	3 cut(s)	228, 235, 549
TasI	AATT	2 cut(s)	439, 647
TatI	WGTACW	1 cut(s)	188
TauI	GCSGC	4 cut(s)	390, 587, 662, 716
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	3 cut(s)	167, 438, 519
Tru9I	TTAA	3 cut(s)	167, 438, 519
TscAI	CASTG	5 cut(s)	16, 61, 265, 331, 883
TseFI	GTSAC	1 cut(s)	755
TseI	GCWGC	4 cut(s)	112, 296, 598, 862
Tsp45I	GTSAC	1 cut(s)	755
TspDTI	ATGAA	1 cut(s)	715
TspRI	CASTG	5 cut(s)	16, 61, 265, 331, 883
Van91I	CCANNNNNTGG	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	891
VspI	ATTAAT	1 cut(s)	438
XagI	CCTNNNNNAGG	1 cut(s)	592
XmaJI	CCTAGG	1 cut(s)	19
XspI	CTAG	3 cut(s)	20, 579, 813
Zsp2I	ATGCAT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.