Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003282

Physical Location & Seq

Genomic Coordinates Reverse (-)

5254450 .. 5256554

Gene Structure 2105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG030700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGAGATGAGATCCTCTGTCGATCGACCACGCAGAGGACGTCTGAAGAATCTAGATGATAGGCTTGCAAAGCTGAATGGGATCTGCTCTGGCCGGTTGTGGGATGCGAAGCAGAGTACTCTGCATTTGAGGAAAAGGTCAGACGAACTGTTTACCTTGATAACCTCTCTCCACAGGTTACTGAACCGGTTGTCAGAAAAGCTATCTCTCAGTTCGGGACAGTTAAAAATGTTCAATTCATTCCAAATTACTTGGAAACAAAGAACATCCCCGTTTCTGCATTGGTGGAGATGGAGAACCCGAGGCAAGCTAATGCCATTGTCTCAGAAATATCTCACAGGCCTTTTATGGTTGGTGGAATTCCAAGGCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

14.81

Weight (kDa)

11.46

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003282)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334151 RchiOBHm_Chr6g0275401
rosa_laevigata	RLG00000012330 RLG00000023103 RLG00000023473 RLG00000023476 RLG00000028751 RLG00000029476
rosa_multiflora	Rmu_co8467563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019700 Rroxscaffold_1G00039360 Rroxscaffold_3G00249990 Rroxscaffold_3G00275150 Rroxscaffold_6G00395480 Rroxscaffold_7G00190930
rosa_rugosa	Rorug03G0305200
rosa_samantha	Rh2AG435100 Rh2DG453400 Rh2DG691400 Rh3AG051100 Rh3BG052300 Rh3BG303700 Rh3CG052000 Rh3DG052700 Rh4AG232800 Rh4AG393900 Rh4BG028000 Rh4DG030700 Rh4DG400900 Rh5AG348100 Rh5AG355400 Rh5DG570200 Rh6AG205300 Rh6BG208300 Rh6BG518000 Rh7AG242500 Rh7AG438800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	43
AclWI	GGATC	2 cut(s)	6, 89
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	359
AcuI	CTGAAG	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	40
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	2 cut(s)	35, 100
AgeI	ACCGGT	1 cut(s)	186
AgsI	TTSAA	1 cut(s)	235
AluBI	AGCT	3 cut(s)	73, 202, 310
AluI	AGCT	3 cut(s)	73, 202, 310
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	2 cut(s)	6, 89
Ama87I	CYCGRG	1 cut(s)	300
AoxI	GGCC	3 cut(s)	91, 340, 367
ApoI	RAATTY	1 cut(s)	359
AsiGI	ACCGGT	1 cut(s)	186
AvaI	CYCGRG	1 cut(s)	300
BccI	CCATC	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	1 cut(s)	53
BmcAI	AGTACT	1 cut(s)	118
BmeT110I	CYCGRG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	94
BsaHI	GRCGYC	1 cut(s)	40
BsaJI	CCNNGG	2 cut(s)	301, 364
BsaWI	WCCGGW	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 100
Bse118I	RCCGGY	2 cut(s)	93, 186
BseDI	CCNNGG	2 cut(s)	301, 364
BseGI	GGATG	2 cut(s)	109, 266
BseLI	CCNNNNNNNGG	2 cut(s)	35, 100
BseMII	CTCAG	2 cut(s)	223, 338
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	3 cut(s)	93, 342, 369
BshTI	ACCGGT	1 cut(s)	186
BsiEI	CGRYCG	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	94, 187
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	2 cut(s)	35, 100
BsmAI	GTCTC	1 cut(s)	327
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	3 cut(s)	93, 342, 369
BsoBI	CYCGRG	1 cut(s)	300
Bsp143I	GATC	3 cut(s)	11, 22, 81
BspANI	GGCC	3 cut(s)	93, 342, 369
BspCNI	CTCAG	2 cut(s)	222, 337
BspPI	GGATC	2 cut(s)	6, 89
BsrFI	RCCGGY	2 cut(s)	93, 186
BssAI	RCCGGY	2 cut(s)	93, 186
BssECI	CCNNGG	2 cut(s)	301, 364
BssMI	GATC	3 cut(s)	11, 22, 81
BssNI	GRCGYC	1 cut(s)	40
BssT1I	CCWWGG	1 cut(s)	364
Bst4CI	ACNGT	2 cut(s)	150, 222
BstACI	GRCGYC	1 cut(s)	40
BstC8I	GCNNGC	2 cut(s)	66, 308
BstDEI	CTNAG	2 cut(s)	209, 324
BstF5I	GGATG	2 cut(s)	109, 266
BstKTI	GATC	3 cut(s)	14, 25, 84
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	3 cut(s)	11, 22, 81
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstX2I	RGATCY	2 cut(s)	11, 81
BstYI	RGATCY	2 cut(s)	11, 81
BsuRI	GGCC	3 cut(s)	93, 342, 369
BtsCI	GGATG	2 cut(s)	109, 266
Cac8I	GCNNGC	2 cut(s)	66, 308
Cfr10I	RCCGGY	2 cut(s)	93, 186
Csp6I	GTAC	1 cut(s)	117
CspAI	ACCGGT	1 cut(s)	186
CviJI	RGCY	7 cut(s)	64, 73, 93, 202, 310, 342, 369
CviKI_1	RGCY	7 cut(s)	64, 73, 93, 202, 310, 342, 369
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	2 cut(s)	209, 324
DpnI	GATC	3 cut(s)	13, 24, 83
DpnII	GATC	3 cut(s)	11, 22, 81
EaeI	YGGCCR	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	364
Eco147I	AGGCCT	2 cut(s)	342, 369
Eco57I	CTGAAG	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	300
EcoRI	GAATTC	1 cut(s)	359
EcoT14I	CCWWGG	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	364
FaiI	YATR	1 cut(s)	349
FaqI	GGGAC	1 cut(s)	231
FokI	GGATG	2 cut(s)	116, 253
FspBI	CTAG	1 cut(s)	53
HaeIII	GGCC	3 cut(s)	93, 342, 369
HapII	CCGG	2 cut(s)	94, 187
Hin1I	GRCGYC	1 cut(s)	40
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	2 cut(s)	94, 187
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	4 cut(s)	45, 142, 196, 327
Hpy188III	TCNNGA	2 cut(s)	53, 216
Hpy8I	GTNNAC	1 cut(s)	153
HpyCH4III	ACNGT	2 cut(s)	150, 222
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	3 cut(s)	68, 124, 280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	2 cut(s)	209, 324
HpySE526I	ACGT	1 cut(s)	40
Hsp92I	GRCGYC	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	11, 22, 81
LpnPI	CCDG	5 cut(s)	75, 107, 160, 200, 324
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	177
MalI	GATC	3 cut(s)	13, 24, 83
MboI	GATC	3 cut(s)	11, 22, 81
MboII	GAAGA	1 cut(s)	58
MflI	RGATCY	2 cut(s)	11, 81
MluCI	AATT	3 cut(s)	235, 246, 359
MnlI	CCTC	5 cut(s)	25, 29, 123, 175, 296
MseI	TTAA	1 cut(s)	224
MspI	CCGG	2 cut(s)	94, 187
MwoI	GCNNNNNNNGC	1 cut(s)	70
NdeII	GATC	3 cut(s)	11, 22, 81
PceI	AGGCCT	2 cut(s)	342, 369
PcsI	WCGNNNNNNNCGW	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	49
PinAI	ACCGGT	1 cut(s)	186
Ple19I	CGATCG	1 cut(s)	25
PsuI	RGATCY	2 cut(s)	11, 81
PvuI	CGATCG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	224
Sau3AI	GATC	3 cut(s)	11, 22, 81
ScaI	AGTACT	1 cut(s)	118
SetI	ASST	8 cut(s)	43, 75, 140, 158, 167, 179, 204, 312
SfaNI	GCATC	1 cut(s)	94
Sse9I	AATT	3 cut(s)	235, 246, 359
SseBI	AGGCCT	2 cut(s)	342, 369
SspMI	CTAG	1 cut(s)	53
StuI	AGGCCT	2 cut(s)	342, 369
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	2 cut(s)	150, 222
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	2 cut(s)	21, 25
TasI	AATT	3 cut(s)	235, 246, 359
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	228
XapI	RAATTY	1 cut(s)	359
XbaI	TCTAGA	1 cut(s)	52
XspI	CTAG	1 cut(s)	53
ZraI	GACGTC	1 cut(s)	41
ZrmI	AGTACT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.