No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0334151 RchiOBHm_Chr6g0275401 |
| rosa_laevigata | RLG00000012330 RLG00000023103 RLG00000023473 RLG00000023476 RLG00000028751 RLG00000029476 |
| rosa_multiflora | Rmu_co8467563.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00019700 Rroxscaffold_1G00039360 Rroxscaffold_3G00249990 Rroxscaffold_3G00275150 Rroxscaffold_6G00395480 Rroxscaffold_7G00190930 |
| rosa_rugosa | Rorug03G0305200 |
| rosa_samantha | Rh2AG435100 Rh2DG453400 Rh2DG691400 Rh3AG051100 Rh3BG052300 Rh3BG303700 Rh3CG052000 Rh3DG052700 Rh4AG232800 Rh4AG393900 Rh4BG028000 Rh4DG030700 Rh4DG400900 Rh5AG348100 Rh5AG355400 Rh5DG570200 Rh6AG205300 Rh6BG208300 Rh6BG518000 Rh7AG242500 Rh7AG438800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 59 |
| AciI | CCGC | 4 cut(s) | 5, 59, 87, 128 |
| AclWI | GGATC | 1 cut(s) | 176 |
| AcsI | RAATTY | 1 cut(s) | 91 |
| AfaI | GTAC | 1 cut(s) | 346 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 191, 208, 280 |
| AgsI | TTSAA | 1 cut(s) | 257 |
| AlwI | GGATC | 1 cut(s) | 176 |
| Ama87I | CYCGRG | 1 cut(s) | 264 |
| AoxI | GGCC | 1 cut(s) | 199 |
| ApeKI | GCWGC | 1 cut(s) | 81 |
| ApoI | RAATTY | 1 cut(s) | 91 |
| AspLEI | GCGC | 2 cut(s) | 86, 214 |
| AsuHPI | GGTGA | 3 cut(s) | 142, 170, 199 |
| AvaI | CYCGRG | 1 cut(s) | 264 |
| BanII | GRGCYC | 3 cut(s) | 239, 314, 333 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 153, 185 |
| BauI | CACGAG | 1 cut(s) | 335 |
| BbsI | GAAGAC | 1 cut(s) | 210 |
| BbvI | GCAGC | 1 cut(s) | 93 |
| BccI | CCATC | 1 cut(s) | 71 |
| BciVI | GTATCC | 1 cut(s) | 33 |
| BfmI | CTRYAG | 1 cut(s) | 145 |
| BfoI | RGCGCY | 1 cut(s) | 87 |
| BfuI | GTATCC | 1 cut(s) | 33 |
| BisI | GCNGC | 2 cut(s) | 82, 87 |
| BlsI | GCNGC | 2 cut(s) | 83, 88 |
| BmeT110I | CYCGRG | 1 cut(s) | 264 |
| BmiI | GGNNCC | 2 cut(s) | 262, 332 |
| BmsI | GCATC | 1 cut(s) | 293 |
| BpiI | GAAGAC | 1 cut(s) | 210 |
| BsaAI | YACGTR | 1 cut(s) | 173 |
| BsaJI | CCNNGG | 1 cut(s) | 265 |
| BsaWI | WCCGGW | 1 cut(s) | 184 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 191, 208, 280 |
| Bse118I | RCCGGY | 1 cut(s) | 191 |
| BseDI | CCNNGG | 1 cut(s) | 265 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 191, 208, 280 |
| BseRI | GAGGAG | 1 cut(s) | 323 |
| BseXI | GCAGC | 1 cut(s) | 93 |
| Bsh1236I | CGCG | 1 cut(s) | 59 |
| Bsh1285I | CGRYCG | 1 cut(s) | 63 |
| BshFI | GGCC | 1 cut(s) | 201 |
| BsiEI | CGRYCG | 1 cut(s) | 63 |
| BsiHKCI | CYCGRG | 1 cut(s) | 264 |
| BsiSI | CCGG | 2 cut(s) | 185, 192 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 191, 208, 280 |
| BsnI | GGCC | 1 cut(s) | 201 |
| BsoBI | CYCGRG | 1 cut(s) | 264 |
| Bsp1286I | GDGCHC | 3 cut(s) | 239, 314, 333 |
| Bsp143I | GATC | 2 cut(s) | 103, 181 |
| BspACI | CCGC | 4 cut(s) | 5, 59, 87, 128 |
| BspANI | GGCC | 1 cut(s) | 201 |
| BspFNI | CGCG | 1 cut(s) | 59 |
| BspLI | GGNNCC | 2 cut(s) | 262, 332 |
| BspPI | GGATC | 1 cut(s) | 176 |
| BsrFI | RCCGGY | 1 cut(s) | 191 |
| BssAI | RCCGGY | 1 cut(s) | 191 |
| BssECI | CCNNGG | 1 cut(s) | 265 |
| BssMI | GATC | 2 cut(s) | 103, 181 |
| BssSI | CACGAG | 1 cut(s) | 335 |
| Bst2BI | CACGAG | 1 cut(s) | 335 |
| Bst4CI | ACNGT | 1 cut(s) | 155 |
| BstBAI | YACGTR | 1 cut(s) | 173 |
| BstDEI | CTNAG | 1 cut(s) | 178 |
| BstEII | GGTNACC | 1 cut(s) | 187 |
| BstFNI | CGCG | 1 cut(s) | 59 |
| BstH2I | RGCGCY | 1 cut(s) | 87 |
| BstHHI | GCGC | 2 cut(s) | 86, 214 |
| BstKTI | GATC | 2 cut(s) | 106, 184 |
| BstMBI | GATC | 2 cut(s) | 103, 181 |
| BstMCI | CGRYCG | 1 cut(s) | 63 |
| BstPI | GGTNACC | 1 cut(s) | 187 |
| BstSFI | CTRYAG | 1 cut(s) | 145 |
| BstUI | CGCG | 1 cut(s) | 59 |
| BstV1I | GCAGC | 1 cut(s) | 93 |
| BstV2I | GAAGAC | 1 cut(s) | 210 |
| BstX2I | RGATCY | 1 cut(s) | 181 |
| BstYI | RGATCY | 1 cut(s) | 181 |
| BsuI | GTATCC | 1 cut(s) | 33 |
| BsuRI | GGCC | 1 cut(s) | 201 |
| CfoI | GCGC | 2 cut(s) | 86, 214 |
| Cfr10I | RCCGGY | 1 cut(s) | 191 |
| Csp6I | GTAC | 1 cut(s) | 345 |
| CviQI | GTAC | 1 cut(s) | 345 |
| DdeI | CTNAG | 1 cut(s) | 178 |
| DpnI | GATC | 2 cut(s) | 105, 183 |
| DpnII | GATC | 2 cut(s) | 103, 181 |
| Eco24I | GRGCYC | 3 cut(s) | 239, 314, 333 |
| Eco88I | CYCGRG | 1 cut(s) | 264 |
| Eco91I | GGTNACC | 1 cut(s) | 187 |
| EcoO65I | GGTNACC | 1 cut(s) | 187 |
| EcoT38I | GRGCYC | 3 cut(s) | 239, 314, 333 |
| FaiI | YATR | 4 cut(s) | 35, 98, 147, 278 |
| Fnu4HI | GCNGC | 2 cut(s) | 82, 87 |
| FriOI | GRGCYC | 3 cut(s) | 239, 314, 333 |
| Fsp4HI | GCNGC | 2 cut(s) | 82, 87 |
| GlaI | GCGC | 2 cut(s) | 85, 213 |
| GluI | GCNGC | 2 cut(s) | 82, 87 |
| HaeII | RGCGCY | 1 cut(s) | 87 |
| HaeIII | GGCC | 1 cut(s) | 201 |
| HapII | CCGG | 2 cut(s) | 185, 192 |
| HhaI | GCGC | 2 cut(s) | 86, 214 |
| Hin6I | GCGC | 2 cut(s) | 84, 212 |
| HinP1I | GCGC | 2 cut(s) | 84, 212 |
| HpaII | CCGG | 2 cut(s) | 185, 192 |
| HphI | GGTGA | 3 cut(s) | 142, 170, 199 |
| Hpy188I | TCNGA | 1 cut(s) | 108 |
| Hpy188III | TCNNGA | 2 cut(s) | 14, 264 |
| Hpy99I | CGWCG | 1 cut(s) | 68 |
| HpyAV | CCTTC | 3 cut(s) | 64, 155, 251 |
| HpyCH4III | ACNGT | 1 cut(s) | 155 |
| HpyCH4IV | ACGT | 1 cut(s) | 172 |
| HpyF3I | CTNAG | 1 cut(s) | 178 |
| HpySE526I | ACGT | 1 cut(s) | 172 |
| HspAI | GCGC | 2 cut(s) | 84, 212 |
| Kzo9I | GATC | 2 cut(s) | 103, 181 |
| LmnI | GCTCC | 2 cut(s) | 266, 336 |
| LpnPI | CCDG | 2 cut(s) | 198, 205 |
| Lsp1109I | GCAGC | 1 cut(s) | 93 |
| LweI | GCATC | 1 cut(s) | 293 |
| MaeII | ACGT | 1 cut(s) | 172 |
| MaeIII | GTNAC | 3 cut(s) | 149, 168, 187 |
| MalI | GATC | 2 cut(s) | 105, 183 |
| MboI | GATC | 2 cut(s) | 103, 181 |
| MboII | GAAGA | 1 cut(s) | 210 |
| MflI | RGATCY | 1 cut(s) | 181 |
| MhlI | GDGCHC | 3 cut(s) | 239, 314, 333 |
| MluCI | AATT | 1 cut(s) | 91 |
| MnlI | CCTC | 5 cut(s) | 56, 212, 260, 344, 362 |
| MspI | CCGG | 2 cut(s) | 185, 192 |
| MvnI | CGCG | 1 cut(s) | 59 |
| NdeII | GATC | 2 cut(s) | 103, 181 |
| NlaIV | GGNNCC | 2 cut(s) | 262, 332 |
| NmuCI | GTSAC | 2 cut(s) | 149, 187 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 63 |
| PkrI | GCNGC | 2 cut(s) | 83, 88 |
| Ppu21I | YACGTR | 1 cut(s) | 173 |
| PspEI | GGTNACC | 1 cut(s) | 187 |
| PspN4I | GGNNCC | 2 cut(s) | 262, 332 |
| PsuI | RGATCY | 1 cut(s) | 181 |
| RsaI | GTAC | 1 cut(s) | 346 |
| RsaNI | GTAC | 1 cut(s) | 345 |
| SatI | GCNGC | 2 cut(s) | 82, 87 |
| Sau3AI | GATC | 2 cut(s) | 103, 181 |
| SduI | GDGCHC | 3 cut(s) | 239, 314, 333 |
| SetI | ASST | 3 cut(s) | 175, 255, 271 |
| SfaNI | GCATC | 1 cut(s) | 293 |
| SfcI | CTRYAG | 1 cut(s) | 145 |
| Sse9I | AATT | 1 cut(s) | 91 |
| SsiI | CCGC | 4 cut(s) | 5, 59, 87, 128 |
| TaaI | ACNGT | 1 cut(s) | 155 |
| TaiI | ACGT | 1 cut(s) | 175 |
| TaqI | TCGA | 2 cut(s) | 15, 314 |
| TasI | AATT | 1 cut(s) | 91 |
| TauI | GCSGC | 1 cut(s) | 89 |
| TseFI | GTSAC | 2 cut(s) | 149, 187 |
| TseI | GCWGC | 1 cut(s) | 81 |
| Tsp45I | GTSAC | 2 cut(s) | 149, 187 |
| XapI | RAATTY | 1 cut(s) | 91 |