RLG00000023476

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0003282
Physical Location & Seq
Forward (+)
24381065 .. 24381644
580 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023476

Sequence Viewer

Length: 465 bp
ATGGATAACAGTGCAGGCCTAGGCTTGTGGGTTCTCTTCTTTCTCTCTTTGACTGGTGCGAGTCCAATGGTGGAGAGGGCGGAGCTTTCTGATTCTGTTCGGATGGACTGGCTGGGTTTCTTTGACCGCGGTGGTGGATTAAGGATTGGTGATCAAACCCTGGGGTCTTGGGTCAACGCTGATGTCCGGGTTAACACGGGAAGCGAATGGCTGGTTTTAATGGTCGACTACTGGCTTTGTACTTTTCGGCCCAAGGTTTGTGGTGGATGCATTGGCCTCGTCGATGGACGAGCTGGCTATTATGACACCGGTGATGGTGCTCAGGGTAGTGGGATTGATGCATTTGCTGCGCAGTTGCTGGCCAGGGCGGATACCAGTGGCTGGGGTAGAGATGGTTCTAACATTGCAGTCTCTTCGGCAGTGATCAACGGCGGAGGTGACGGCTTGATTGTGTCACGACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.2

Weight (kDa)

4.4

Isoelectric Point (pI)

22.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 351
AccB7I CCANNNNNTGG 1 cut(s) 381
AccI GTMKAC 1 cut(s) 225
AccII CGCG 1 cut(s) 129
AciI CCGC 5 cut(s) 80, 127, 129, 368, 432
AcoI YGGCCR 1 cut(s) 360
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 1 cut(s) 381
AgeI ACCGGT 1 cut(s) 308
AjnI CCWGG 2 cut(s) 159, 362
AluBI AGCT 2 cut(s) 85, 293
AluI AGCT 2 cut(s) 85, 293
Alw21I GWGCWC 1 cut(s) 322
Alw26I GTCTC 1 cut(s) 415
AlwNI CAGNNNCTG 2 cut(s) 358, 381
AoxI GGCC 4 cut(s) 16, 248, 274, 360
ApeKI GCWGC 1 cut(s) 347
AsiGI ACCGGT 1 cut(s) 308
AspA2I CCTAGG 1 cut(s) 19
AspLEI GCGC 1 cut(s) 352
AspS9I GGNCC 1 cut(s) 249
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 3 cut(s) 161, 323, 449
AvrII CCTAGG 1 cut(s) 19
BalI TGGCCA 1 cut(s) 362
Bbv12I GWGCWC 1 cut(s) 322
BbvI GCAGC 1 cut(s) 334
BccI CCATC 4 cut(s) 97, 278, 308, 386
BceAI ACGGC 2 cut(s) 445, 457
BcgI CGANNNNNNTGC 4 cut(s) 259, 293, 396, 430
BciT130I CCWGG 2 cut(s) 161, 364
BciVI GTATCC 1 cut(s) 364
BclI TGATCA 2 cut(s) 151, 423
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 415
BfaI CTAG 1 cut(s) 20
BfuI GTATCC 1 cut(s) 364
BisI GCNGC 1 cut(s) 348
BlnI CCTAGG 1 cut(s) 19
BlsI GCNGC 1 cut(s) 349
Bme1390I CCNGG 3 cut(s) 161, 188, 364
BmgT120I GGNCC 1 cut(s) 249
BmrFI CCNGG 3 cut(s) 161, 188, 364
BmsI GCATC 2 cut(s) 257, 328
Bpu10I CCTNAGC 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 188
BsaJI CCNNGG 6 cut(s) 19, 127, 159, 160, 252, 363
BsaWI WCCGGW 1 cut(s) 308
Bsc4I CCNNNNNNNGG 1 cut(s) 381
Bse118I RCCGGY 1 cut(s) 308
Bse1I ACTGG 4 cut(s) 58, 113, 236, 375
Bse3DI GCAATG 1 cut(s) 402
BseBI CCWGG 2 cut(s) 161, 364
BseDI CCNNGG 6 cut(s) 19, 127, 159, 160, 252, 363
BseGI GGATG 2 cut(s) 108, 272
BseLI CCNNNNNNNGG 1 cut(s) 381
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 1 cut(s) 335
BseNI ACTGG 4 cut(s) 58, 113, 236, 375
BseXI GCAGC 1 cut(s) 334
BseYI CCCAGC 2 cut(s) 112, 381
BsgI GTGCAG 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 4 cut(s) 18, 250, 276, 362
BshTI ACCGGT 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 322
BsiSI CCGG 2 cut(s) 187, 309
BslI CCNNNNNNNGG 1 cut(s) 381
BsmAI GTCTC 1 cut(s) 415
BsnI GGCC 4 cut(s) 18, 250, 276, 362
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 2 cut(s) 151, 423
BspACI CCGC 5 cut(s) 80, 127, 129, 368, 432
BspANI GGCC 4 cut(s) 18, 250, 276, 362
BspCNI CTCAG 1 cut(s) 334
BspFNI CGCG 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 402
BsrFI RCCGGY 1 cut(s) 308
BsrI ACTGG 4 cut(s) 58, 113, 236, 375
BssAI RCCGGY 1 cut(s) 308
BssECI CCNNGG 6 cut(s) 19, 127, 159, 160, 252, 363
BssMI GATC 2 cut(s) 151, 423
BssT1I CCWWGG 2 cut(s) 19, 252
Bst2UI CCWGG 2 cut(s) 161, 364
Bst4CI ACNGT 1 cut(s) 11
Bst6I CTCTTC 2 cut(s) 41, 418
BstAPI GCANNNNNTGC 1 cut(s) 347
BstC8I GCNNGC 3 cut(s) 16, 295, 360
BstDEI CTNAG 1 cut(s) 321
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 2 cut(s) 108, 272
BstFNI CGCG 1 cut(s) 129
BstHHI GCGC 1 cut(s) 352
BstKTI GATC 2 cut(s) 154, 426
BstMAI GTCTC 1 cut(s) 415
BstMBI GATC 2 cut(s) 151, 423
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstNI CCWGG 2 cut(s) 161, 364
BstSCI CCNGG 3 cut(s) 159, 186, 362
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 334
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 4 cut(s) 18, 250, 276, 362
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 2 cut(s) 108, 272
BtsI GCAGTG 1 cut(s) 426
BtsIMutI CAGTG 3 cut(s) 16, 382, 426
Cac8I GCNNGC 3 cut(s) 16, 295, 360
CaiI CAGNNNCTG 2 cut(s) 358, 381
CfoI GCGC 1 cut(s) 352
Cfr10I RCCGGY 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 249
Cfr42I CCGCGG 1 cut(s) 130
Csp6I GTAC 1 cut(s) 240
CspAI ACCGGT 1 cut(s) 308
CspCI CAANNNNNGTGG 2 cut(s) 241, 276
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 1 cut(s) 321
DpnI GATC 2 cut(s) 153, 425
DpnII GATC 2 cut(s) 151, 423
EaeI YGGCCR 1 cut(s) 360
Eam1104I CTCTTC 2 cut(s) 41, 418
EarI CTCTTC 2 cut(s) 41, 418
EciI GGCGGA 3 cut(s) 95, 383, 447
Eco130I CCWWGG 2 cut(s) 19, 252
Eco147I AGGCCT 1 cut(s) 18
EcoRII CCWGG 2 cut(s) 159, 362
EcoT14I CCWWGG 2 cut(s) 19, 252
EcoT22I ATGCAT 2 cut(s) 272, 343
ErhI CCWWGG 2 cut(s) 19, 252
FaiI YATR 1 cut(s) 303
FbaI TGATCA 2 cut(s) 151, 423
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 348
FokI GGATG 2 cut(s) 115, 279
Fsp4HI GCNGC 1 cut(s) 348
FspBI CTAG 1 cut(s) 20
FspI TGCGCA 1 cut(s) 351
GlaI GCGC 1 cut(s) 351
GluI GCNGC 1 cut(s) 348
GsaI CCCAGC 2 cut(s) 116, 385
HaeIII GGCC 4 cut(s) 18, 250, 276, 362
HapII CCGG 2 cut(s) 187, 309
HhaI GCGC 1 cut(s) 352
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HincII GTYRAC 3 cut(s) 175, 193, 226
HindII GTYRAC 3 cut(s) 175, 193, 226
HinfI GANTC 2 cut(s) 61, 92
HpaI GTTAAC 1 cut(s) 193
HpaII CCGG 2 cut(s) 187, 309
HphI GGTGA 3 cut(s) 161, 323, 449
Hpy166II GTNNAC 3 cut(s) 175, 193, 226
Hpy188I TCNGA 2 cut(s) 91, 102
Hpy188III TCNNGA 1 cut(s) 456
Hpy8I GTNNAC 3 cut(s) 175, 193, 226
Hpy99I CGWCG 1 cut(s) 284
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4V TGCA 4 cut(s) 14, 270, 341, 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 1 cut(s) 321
HspAI GCGC 1 cut(s) 350
Ksp22I TGATCA 2 cut(s) 151, 423
KspAI GTTAAC 1 cut(s) 193
KspI CCGCGG 1 cut(s) 130
Kzo9I GATC 2 cut(s) 151, 423
LmnI GCTCC 1 cut(s) 82
Lsp1109I GCAGC 1 cut(s) 334
LweI GCATC 2 cut(s) 257, 328
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 2 cut(s) 437, 453
MalI GATC 2 cut(s) 153, 425
MboI GATC 2 cut(s) 151, 423
MboII GAAGA 2 cut(s) 28, 405
MhlI GDGCHC 1 cut(s) 322
MlsI TGGCCA 1 cut(s) 362
MluNI TGGCCA 1 cut(s) 362
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 3 cut(s) 69, 287, 428
Mox20I TGGCCA 1 cut(s) 362
Mph1103I ATGCAT 2 cut(s) 272, 343
MscI TGGCCA 1 cut(s) 362
MseI TTAA 3 cut(s) 140, 192, 218
Msp20I TGGCCA 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 129
MspI CCGG 2 cut(s) 187, 309
MspR9I CCNGG 3 cut(s) 161, 188, 364
MvaI CCWGG 2 cut(s) 161, 364
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 347
NciI CCSGG 1 cut(s) 188
NdeII GATC 2 cut(s) 151, 423
NmuCI GTSAC 2 cut(s) 437, 453
NsbI TGCGCA 1 cut(s) 351
NsiI ATGCAT 2 cut(s) 272, 343
PasI CCCWGGG 1 cut(s) 160
PceI AGGCCT 1 cut(s) 18
PfeI GAWTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 381
PinAI ACCGGT 1 cut(s) 308
PkrI GCNGC 1 cut(s) 349
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
Psp6I CCWGG 2 cut(s) 159, 362
PspFI CCCAGC 2 cut(s) 112, 381
PspGI CCWGG 2 cut(s) 159, 362
PspPI GGNCC 1 cut(s) 249
PsrI GAACNNNNNNTAC 2 cut(s) 379, 411
PstNI CAGNNNCTG 2 cut(s) 358, 381
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SacII CCGCGG 1 cut(s) 130
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 3 cut(s) 140, 192, 218
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 2 cut(s) 151, 423
Sau96I GGNCC 1 cut(s) 249
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 3 cut(s) 161, 188, 364
SduI GDGCHC 1 cut(s) 322
SetI ASST 4 cut(s) 87, 258, 295, 439
SfaNI GCATC 2 cut(s) 257, 328
Sfr303I CCGCGG 1 cut(s) 130
SgrAI CRCCGGYG 1 cut(s) 308
SgrBI CCGCGG 1 cut(s) 130
SseBI AGGCCT 1 cut(s) 18
SsiI CCGC 5 cut(s) 80, 127, 129, 368, 432
SspMI CTAG 1 cut(s) 20
StuI AGGCCT 1 cut(s) 18
StyD4I CCNGG 3 cut(s) 159, 186, 362
StyI CCWWGG 2 cut(s) 19, 252
TaaI ACNGT 1 cut(s) 11
TaqI TCGA 2 cut(s) 225, 282
TatI WGTACW 1 cut(s) 239
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 3 cut(s) 140, 192, 218
Tru9I TTAA 3 cut(s) 140, 192, 218
TscAI CASTG 3 cut(s) 16, 382, 426
TseFI GTSAC 2 cut(s) 437, 453
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 2 cut(s) 437, 453
TspRI CASTG 3 cut(s) 16, 382, 426
Van91I CCANNNNNTGG 1 cut(s) 381
XmaJI CCTAGG 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 1 cut(s) 20
Zsp2I ATGCAT 2 cut(s) 272, 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.