Rh2DG691400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003282
Physical Location & Seq
Reverse (-)
90803136 .. 90803378
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG691400.1

Sequence Viewer

Length: 243 bp
ATGGGCTGCCCTGCTGATCCGGGTCGGATCCGACCACGCAAAGGACGATTGAAAGAGCCTGACAACGGGCATGCAGGGTTGAAGGAGATTGGCTTTTGTTGGTTGGTGGATGAGACAAAGGATCGGCTCTGTTCCTGGAACAAGGTGGGGGCAATTTGGCTTTCAGAAGCAGTGGCGGGCCGACTCCAACTTGCAAGAGCGATGCAATTCGCCTTCCGTACTAGGGTAGTCGGATTCCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.97

Weight (kDa)

9.91

Isoelectric Point (pI)

21.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 176
AclWI GGATC 4 cut(s) 11, 22, 35, 129
AfaI GTAC 1 cut(s) 220
AfiI CCNNNNNNNGG 3 cut(s) 41, 65, 223
AgsI TTSAA 2 cut(s) 52, 82
AjnI CCWGG 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 4 cut(s) 11, 22, 35, 129
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 178
AsuC2I CCSGG 1 cut(s) 21
BamHI GGATCC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 136
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 239
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
Bme1390I CCNGG 2 cut(s) 21, 136
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 2 cut(s) 21, 136
BmsI GCATC 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 65, 223
BseBI CCWGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 3 cut(s) 41, 65, 223
BshFI GGCC 1 cut(s) 180
BsiSI CCGG 1 cut(s) 20
BslI CCNNNNNNNGG 3 cut(s) 41, 65, 223
BsmAI GTCTC 1 cut(s) 107
BsnI GGCC 1 cut(s) 180
Bsp143I GATC 3 cut(s) 16, 27, 121
BspACI CCGC 1 cut(s) 176
BspANI GGCC 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 29
BspPI GGATC 4 cut(s) 11, 22, 35, 129
BssMI GATC 3 cut(s) 16, 27, 121
Bst2UI CCWGG 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 72, 178
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 3 cut(s) 19, 30, 124
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 3 cut(s) 16, 27, 121
BstNI CCWGG 1 cut(s) 136
BstNSI RCATGY 1 cut(s) 74
BstSCI CCNGG 2 cut(s) 19, 134
BstSFI CTRYAG 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BsuRI GGCC 1 cut(s) 180
BtgZI GCGATG 1 cut(s) 215
BtsCI GGATG 1 cut(s) 115
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 2 cut(s) 72, 178
Cfr13I GGNCC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 219
CviAII CATG 1 cut(s) 71
CviJI RGCY 6 cut(s) 6, 58, 93, 127, 160, 180
CviKI_1 RGCY 6 cut(s) 6, 58, 93, 127, 160, 180
CviQI GTAC 1 cut(s) 219
DpnI GATC 3 cut(s) 18, 29, 123
DpnII GATC 3 cut(s) 16, 27, 121
EcoRII CCWGG 1 cut(s) 134
FaeI CATG 1 cut(s) 74
FaiI YATR 1 cut(s) 72
FatI CATG 1 cut(s) 70
FauI CCCGC 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 7
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 7
FspBI CTAG 1 cut(s) 222
GluI GCNGC 1 cut(s) 7
HaeIII GGCC 1 cut(s) 180
HapII CCGG 1 cut(s) 20
Hin1II CATG 1 cut(s) 74
HinfI GANTC 2 cut(s) 183, 234
HpaII CCGG 1 cut(s) 20
Hpy188I TCNGA 4 cut(s) 27, 32, 166, 233
HpyAV CCTTC 2 cut(s) 76, 223
HpyCH4V TGCA 3 cut(s) 74, 194, 205
Hsp92II CATG 1 cut(s) 74
Kzo9I GATC 3 cut(s) 16, 27, 121
LpnPI CCDG 6 cut(s) 24, 33, 60, 72, 121, 148
LweI GCATC 1 cut(s) 192
MaeI CTAG 1 cut(s) 222
MalI GATC 3 cut(s) 18, 29, 123
MboI GATC 3 cut(s) 16, 27, 121
MflI RGATCY 1 cut(s) 27
MluCI AATT 2 cut(s) 153, 206
MlyI GAGTC 1 cut(s) 177
MmeI TCCRAC 4 cut(s) 5, 55, 211, 211
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 2 cut(s) 21, 136
MvaI CCWGG 1 cut(s) 136
NciI CCSGG 1 cut(s) 21
NdeII GATC 3 cut(s) 16, 27, 121
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 1 cut(s) 29
NspI RCATGY 1 cut(s) 74
PaeI GCATGC 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 43
PfeI GAWTC 1 cut(s) 234
PfoI TCCNGGA 1 cut(s) 134
PkrI GCNGC 1 cut(s) 8
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 1 cut(s) 178
PsuI RGATCY 1 cut(s) 27
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SatI GCNGC 1 cut(s) 7
Sau3AI GATC 3 cut(s) 16, 27, 121
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 2 cut(s) 21, 136
SetI ASST 1 cut(s) 147
SfaNI GCATC 1 cut(s) 192
SfcI CTRYAG 1 cut(s) 239
SphI GCATGC 1 cut(s) 74
Sse9I AATT 2 cut(s) 153, 206
SsiI CCGC 1 cut(s) 176
SspMI CTAG 1 cut(s) 222
StyD4I CCNGG 2 cut(s) 19, 134
TasI AATT 2 cut(s) 153, 206
TfiI GAWTC 1 cut(s) 234
TscAI CASTG 1 cut(s) 177
TseI GCWGC 1 cut(s) 6
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 1 cut(s) 177
XceI RCATGY 1 cut(s) 74
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.