Rh3BG052300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0003282
Physical Location & Seq
Forward (+)
3581920 .. 3582216
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG052300.1

Sequence Viewer

Length: 297 bp
ATGATTACTCCCTCCTCCAACATAGCCAGTTTTGGTAGAAGTGGGATATTGGATTCGGTGATGCCAGCGGAGCAATGCTACTCGTGGATGGCTTCGGCGGGGCAACCTCTGACCGGGGTCGTTAGTCGTTCTTGCTTTGGTGGCGGTAAAGGTGGCATGGCTATCGGCGGCATCTCTGACGGCGATGGAGGCAATGCAGGTGGAGTCGGCGACCGGTCTTTGGCAGCGACAAGGTTGGTGCTCCTAGGGCGAACTGGATATCTTGGTGGGGTTGTGTTCAGTTGGGTTTGGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

9.79

Weight (kDa)

7.8

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 188
Acc36I ACCTGC 1 cut(s) 188
AciI CCGC 4 cut(s) 68, 98, 144, 168
AfiI CCNNNNNNNGG 2 cut(s) 113, 220
AgeI ACCGGT 1 cut(s) 213
Alw21I GWGCWC 1 cut(s) 243
AoxI GGCC 1 cut(s) 291
ApeKI GCWGC 1 cut(s) 224
AsiGI ACCGGT 1 cut(s) 213
AspA2I CCTAGG 1 cut(s) 244
AspS9I GGNCC 1 cut(s) 291
AsuC2I CCSGG 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 70
AvrII CCTAGG 1 cut(s) 244
BauI CACGAG 1 cut(s) 82
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 236
BccI CCATC 2 cut(s) 82, 179
BceAI ACGGC 1 cut(s) 196
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BcnI CCSGG 1 cut(s) 115
BfaI CTAG 2 cut(s) 245, 295
BfuAI ACCTGC 1 cut(s) 188
BisI GCNGC 2 cut(s) 169, 225
BlnI CCTAGG 1 cut(s) 244
BlsI GCNGC 2 cut(s) 170, 226
Bme1390I CCNGG 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 2 cut(s) 51, 180
BoxI GACNNNNGTC 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 114, 244
BsaWI WCCGGW 1 cut(s) 213
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 220
Bse118I RCCGGY 1 cut(s) 213
Bse1I ACTGG 2 cut(s) 27, 259
Bse3DI GCAATG 2 cut(s) 80, 199
BseDI CCNNGG 2 cut(s) 114, 244
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 2 cut(s) 113, 220
BseMI GCAATG 2 cut(s) 80, 199
BseNI ACTGG 2 cut(s) 27, 259
BseRI GAGGAG 1 cut(s) 4
BseXI GCAGC 1 cut(s) 236
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 1 cut(s) 293
BshTI ACCGGT 1 cut(s) 213
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 2 cut(s) 114, 214
BslI CCNNNNNNNGG 2 cut(s) 113, 220
BsnI GGCC 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 243
BspACI CCGC 4 cut(s) 68, 98, 144, 168
BspANI GGCC 1 cut(s) 293
BspMI ACCTGC 1 cut(s) 188
BsrDI GCAATG 2 cut(s) 80, 199
BsrFI RCCGGY 1 cut(s) 213
BsrI ACTGG 2 cut(s) 27, 259
BssAI RCCGGY 1 cut(s) 213
BssECI CCNNGG 2 cut(s) 114, 244
BssSI CACGAG 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 244
Bst2BI CACGAG 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 66
BstF5I GGATG 1 cut(s) 93
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 4 cut(s) 70, 141, 189, 247
BstPAI GACNNNNGTC 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 236
BsuRI GGCC 1 cut(s) 293
BtgZI GCGATG 1 cut(s) 198
BtsCI GGATG 1 cut(s) 93
BveI ACCTGC 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 291
CspAI ACCGGT 1 cut(s) 213
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 1 cut(s) 157
CviJI RGCY 4 cut(s) 26, 92, 161, 293
CviKI_1 RGCY 4 cut(s) 26, 92, 161, 293
Eco130I CCWWGG 1 cut(s) 244
Eco32I GATATC 1 cut(s) 260
EcoRV GATATC 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 1 cut(s) 160
FaiI YATR 2 cut(s) 23, 158
FatI CATG 1 cut(s) 156
FauI CCCGC 1 cut(s) 91
Fnu4HI GCNGC 2 cut(s) 169, 225
FokI GGATG 1 cut(s) 100
Fsp4HI GCNGC 2 cut(s) 169, 225
FspBI CTAG 2 cut(s) 245, 295
GluI GCNGC 2 cut(s) 169, 225
HaeIII GGCC 1 cut(s) 293
HapII CCGG 2 cut(s) 114, 214
Hin1II CATG 1 cut(s) 160
HinfI GANTC 2 cut(s) 53, 204
HpaII CCGG 2 cut(s) 114, 214
HphI GGTGA 1 cut(s) 70
Hpy188I TCNGA 2 cut(s) 111, 178
HpyCH4V TGCA 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 141, 189, 247
Hsp92II CATG 1 cut(s) 160
LmnI GCTCC 2 cut(s) 70, 246
LpnPI CCDG 6 cut(s) 40, 78, 127, 183, 227, 240
Lsp1109I GCAGC 1 cut(s) 236
LweI GCATC 2 cut(s) 51, 180
MaeI CTAG 2 cut(s) 245, 295
MhlI GDGCHC 1 cut(s) 243
MlyI GAGTC 1 cut(s) 213
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 4 cut(s) 22, 25, 117, 182
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 2 cut(s) 114, 214
MspR9I CCNGG 1 cut(s) 115
MwoI GCNNNNNNNGC 4 cut(s) 70, 141, 189, 247
NciI CCSGG 1 cut(s) 115
NlaIII CATG 1 cut(s) 160
PaqCI CACCTGC 1 cut(s) 188
PfeI GAWTC 1 cut(s) 53
PinAI ACCGGT 1 cut(s) 213
PkrI GCNGC 2 cut(s) 170, 226
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PshAI GACNNNNGTC 1 cut(s) 116
PspPI GGNCC 1 cut(s) 291
SatI GCNGC 2 cut(s) 169, 225
Sau96I GGNCC 1 cut(s) 291
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 1 cut(s) 115
SduI GDGCHC 1 cut(s) 243
SetI ASST 4 cut(s) 109, 154, 202, 236
SfaNI GCATC 2 cut(s) 51, 180
SsiI CCGC 4 cut(s) 68, 98, 144, 168
SspMI CTAG 2 cut(s) 245, 295
StyD4I CCNGG 1 cut(s) 113
StyI CCWWGG 1 cut(s) 244
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 1 cut(s) 53
TseI GCWGC 1 cut(s) 224
XmaJI CCTAGG 1 cut(s) 244
XspI CTAG 2 cut(s) 245, 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.