Rh2AG435100

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003282
Physical Location & Seq
Reverse (-)
64592016 .. 64595859
3844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG435100.1

Sequence Viewer

Length: 945 bp
ATGAAGATGATGGCTGGACTGGTAGTCGGAGGTGGCAATCTTGCAAATGCGGTGGCTAGCGTCAGATATGATGCTGGTATTGGAATTTGCAGAGGCGACATTTCCTTGCTGATGTGTAGTGTTGCAGCCGATCTTGTTGGTGGCGAGGACAACTATGGTAAATATTTTGTTAAGAGTGGTTATTGGGCTGCACATGCTATTCATGACCATATGGCAGGTGATGAGGATCTTCAATCTCTGTGGTGGATGAAAGCTTATAGGTTGTTGGAGGACTTTGCTAGTACTAATATTGGGAGCATCTTACCTGTTGATCAGCAAAGAAACTTGCAGCCATCTCACTCTACATGTCCCAAATGGGTGAAGCATGTTTTCCCTTTTGTGAAAATCAATGTTGATGGTGCATTTAATATGGAGAATGGGCGTAGGGGCTTAGGGGTTGTGATTTGCCATTTGGATGGTTTTGTATTACTGGTTGCTGTCAAAGGTTTAACTGAAAATTTCTCTCCAAGGGCAACAGAGCTATATGCTGCATCTTTGGGTCTTAATTTAGCAAGGAATGGAGGGTACACTCATGTATTGCTTGAGATGGATGTCAAAGAGGAATTTGTCTTGGGGATGCAGGGTCGACGTCCTCCTAGCCGCCGATGTGATGGAGATCTAGGGGTTGATTTAGACCTAGTTTGGCCTGAGATTGGAAACTCTCGTGTTGGGATGATTACTCTCTCGTCCAGCACAACCGGTTTTAGTAGAAGTGGGATACTGGGTTTGGTGATGCCAACGAAGCAACTTTGCTCGAGGACGACTTCTACATCTCAACTTTTGGCCATGGTCGTGGGTCGCTTCTGCTTTGGTGGTGGTAAAGGTGGTGTGGCCACCGGCGGCATATCTGACGACGATAGAGGTAGTGCAGGTGGTGTCGGCAGCGGGTCTTTAGCGGCGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

314

Amino Acids

33.33

Weight (kDa)

6.65

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 130 - 200 1.7e-09 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 206, 899
AatII GACGTC 1 cut(s) 631
Acc36I ACCTGC 2 cut(s) 206, 899
AccI GTMKAC 1 cut(s) 625
AciI CCGC 5 cut(s) 50, 640, 879, 924, 935
AclWI GGATC 1 cut(s) 234
AcoI YGGCCR 2 cut(s) 822, 870
AcsI RAATTY 3 cut(s) 84, 496, 602
AcyI GRCGYC 1 cut(s) 628
AfaI GTAC 2 cut(s) 283, 566
AfiI CCNNNNNNNGG 1 cut(s) 692
AflIII ACRYGT 1 cut(s) 344
AgeI ACCGGT 1 cut(s) 737
AgsI TTSAA 1 cut(s) 233
AhdI GACNNNNNGTC 1 cut(s) 23
AluBI AGCT 2 cut(s) 254, 520
AluI AGCT 2 cut(s) 254, 520
AlwI GGATC 1 cut(s) 234
Ama87I CYCGRG 1 cut(s) 793
AoxI GGCC 3 cut(s) 683, 822, 870
ApeKI GCWGC 5 cut(s) 125, 188, 328, 527, 921
ApoI RAATTY 3 cut(s) 84, 496, 602
AsiGI ACCGGT 1 cut(s) 737
AsuHPI GGTGA 3 cut(s) 230, 370, 781
AsuNHI GCTAGC 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 793
BalI TGGCCA 2 cut(s) 824, 872
BauI CACGAG 1 cut(s) 702
BbvI GCAGC 5 cut(s) 137, 175, 340, 514, 933
BccI CCATC 6 cut(s) 4, 340, 389, 449, 580, 644
BciVI GTATCC 1 cut(s) 750
BclI TGATCA 1 cut(s) 310
BfaI CTAG 5 cut(s) 57, 279, 636, 659, 677
BfuAI ACCTGC 2 cut(s) 206, 899
BfuI GTATCC 1 cut(s) 750
BglII AGATCT 1 cut(s) 655
BisI GCNGC 8 cut(s) 126, 189, 329, 528, 640, 880, 922, 936
BlsI GCNGC 8 cut(s) 127, 190, 330, 529, 641, 881, 923, 937
BmcAI AGTACT 1 cut(s) 283
BmeRI GACNNNNNGTC 1 cut(s) 23
BmeT110I CYCGRG 1 cut(s) 793
BmrI ACTGGG 1 cut(s) 770
BmsI GCATC 5 cut(s) 61, 306, 539, 606, 762
BmtI GCTAGC 1 cut(s) 60
BmuI ACTGGG 1 cut(s) 770
Bpu10I CCTNAGC 1 cut(s) 430
BpuEI CTTGAG 1 cut(s) 602
BsaBI GATNNNNATC 2 cut(s) 225, 654
BsaHI GRCGYC 1 cut(s) 628
BsaJI CCNNGG 2 cut(s) 506, 825
BsaWI WCCGGW 1 cut(s) 737
Bsc4I CCNNNNNNNGG 1 cut(s) 692
Bse118I RCCGGY 2 cut(s) 737, 875
Bse1I ACTGG 3 cut(s) 24, 474, 765
Bse8I GATNNNNATC 2 cut(s) 225, 654
BseDI CCNNGG 2 cut(s) 506, 825
BseGI GGATG 5 cut(s) 252, 460, 595, 621, 717
BseJI GATNNNNATC 2 cut(s) 225, 654
BseLI CCNNNNNNNGG 1 cut(s) 692
BseMII CTCAG 1 cut(s) 678
BseNI ACTGG 3 cut(s) 24, 474, 765
BseXI GCAGC 5 cut(s) 137, 175, 340, 514, 933
BsgI GTGCAG 2 cut(s) 174, 927
BshFI GGCC 3 cut(s) 685, 824, 872
BshTI ACCGGT 1 cut(s) 737
BsiHKCI CYCGRG 1 cut(s) 793
BsiSI CCGG 2 cut(s) 738, 876
BslFI GGGAC 1 cut(s) 333
BslI CCNNNNNNNGG 1 cut(s) 692
BsmFI GGGAC 1 cut(s) 333
BsnI GGCC 3 cut(s) 685, 824, 872
BsoBI CYCGRG 1 cut(s) 793
Bsp143I GATC 4 cut(s) 130, 226, 310, 655
Bsp19I CCATGG 1 cut(s) 825
BspACI CCGC 5 cut(s) 50, 640, 879, 924, 935
BspANI GGCC 3 cut(s) 685, 824, 872
BspCNI CTCAG 1 cut(s) 679
BspHI TCATGA 1 cut(s) 202
BspMI ACCTGC 2 cut(s) 206, 899
BspOI GCTAGC 1 cut(s) 60
BspPI GGATC 1 cut(s) 234
BsrFI RCCGGY 2 cut(s) 737, 875
BsrI ACTGG 3 cut(s) 24, 474, 765
BssAI RCCGGY 2 cut(s) 737, 875
BssECI CCNNGG 2 cut(s) 506, 825
BssMI GATC 4 cut(s) 130, 226, 310, 655
BssNI GRCGYC 1 cut(s) 628
BssSI CACGAG 1 cut(s) 702
BssT1I CCWWGG 2 cut(s) 506, 825
Bst2BI CACGAG 1 cut(s) 702
BstACI GRCGYC 1 cut(s) 628
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 430, 687
BstDSI CCRYGG 1 cut(s) 825
BstF5I GGATG 5 cut(s) 252, 460, 595, 621, 717
BstKTI GATC 4 cut(s) 133, 229, 313, 658
BstMBI GATC 4 cut(s) 130, 226, 310, 655
BstMWI GCNNNNNNNGC 2 cut(s) 194, 781
BstNSI RCATGY 3 cut(s) 197, 348, 368
BstV1I GCAGC 5 cut(s) 137, 175, 340, 514, 933
BstX2I RGATCY 2 cut(s) 226, 655
BstXI CCANNNNNNTGG 2 cut(s) 455, 832
BstYI RGATCY 2 cut(s) 226, 655
BsuI GTATCC 1 cut(s) 750
BsuRI GGCC 3 cut(s) 685, 824, 872
BtgI CCRYGG 1 cut(s) 825
BtsCI GGATG 5 cut(s) 252, 460, 595, 621, 717
BveI ACCTGC 2 cut(s) 206, 899
Cac8I GCNNGC 1 cut(s) 58
CciI TCATGA 1 cut(s) 202
Cfr10I RCCGGY 2 cut(s) 737, 875
CseI GACGC 1 cut(s) 49
Csp6I GTAC 2 cut(s) 282, 565
CspAI ACCGGT 1 cut(s) 737
CspCI CAANNNNNGTGG 4 cut(s) 33, 68, 221, 256
CviAII CATG 6 cut(s) 194, 203, 345, 365, 572, 826
CviQI GTAC 2 cut(s) 282, 565
DdeI CTNAG 2 cut(s) 430, 687
DpnI GATC 4 cut(s) 132, 228, 312, 657
DpnII GATC 4 cut(s) 130, 226, 310, 655
DriI GACNNNNNGTC 1 cut(s) 23
EaeI YGGCCR 2 cut(s) 822, 870
Eam1105I GACNNNNNGTC 1 cut(s) 23
Eco130I CCWWGG 2 cut(s) 506, 825
Eco88I CYCGRG 1 cut(s) 793
EcoT14I CCWWGG 2 cut(s) 506, 825
ErhI CCWWGG 2 cut(s) 506, 825
FaeI CATG 6 cut(s) 197, 206, 348, 368, 575, 829
FaqI GGGAC 1 cut(s) 333
FatI CATG 6 cut(s) 193, 202, 344, 364, 571, 825
FauI CCCGC 1 cut(s) 917
FauNDI CATATG 1 cut(s) 210
FbaI TGATCA 1 cut(s) 310
FblI GTMKAC 1 cut(s) 625
Fnu4HI GCNGC 8 cut(s) 126, 189, 329, 528, 640, 880, 922, 936
FokI GGATG 5 cut(s) 259, 467, 602, 628, 724
Fsp4HI GCNGC 8 cut(s) 126, 189, 329, 528, 640, 880, 922, 936
FspBI CTAG 5 cut(s) 57, 279, 636, 659, 677
GluI GCNGC 8 cut(s) 126, 189, 329, 528, 640, 880, 922, 936
HaeIII GGCC 3 cut(s) 685, 824, 872
HapII CCGG 2 cut(s) 738, 876
HgaI GACGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 628
Hin1II CATG 6 cut(s) 197, 206, 348, 368, 575, 829
HincII GTYRAC 1 cut(s) 626
HindII GTYRAC 1 cut(s) 626
HindIII AAGCTT 1 cut(s) 252
HpaII CCGG 2 cut(s) 738, 876
HphI GGTGA 3 cut(s) 230, 370, 781
Hpy166II GTNNAC 2 cut(s) 567, 626
Hpy188I TCNGA 3 cut(s) 29, 65, 889
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 2 cut(s) 567, 626
Hpy99I CGWCG 2 cut(s) 630, 896
HpyCH4IV ACGT 1 cut(s) 628
HpyCH4V TGCA 9 cut(s) 44, 90, 125, 191, 328, 401, 530, 619, 908
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 781
HpyF3I CTNAG 2 cut(s) 430, 687
HpySE526I ACGT 1 cut(s) 628
Hsp92I GRCGYC 1 cut(s) 628
Hsp92II CATG 6 cut(s) 197, 206, 348, 368, 575, 829
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 4 cut(s) 130, 226, 310, 655
LmnI GCTCC 1 cut(s) 294
Lsp1109I GCAGC 5 cut(s) 137, 175, 340, 514, 933
LweI GCATC 5 cut(s) 61, 306, 539, 606, 762
MaeI CTAG 5 cut(s) 57, 279, 636, 659, 677
MaeII ACGT 1 cut(s) 628
MalI GATC 4 cut(s) 132, 228, 312, 657
MboI GATC 4 cut(s) 130, 226, 310, 655
MboII GAAGA 2 cut(s) 16, 221
MflI RGATCY 2 cut(s) 226, 655
MlsI TGGCCA 2 cut(s) 824, 872
MluCI AATT 4 cut(s) 84, 496, 544, 602
MluNI TGGCCA 2 cut(s) 824, 872
MmeI TCCRAC 2 cut(s) 7, 246
Mox20I TGGCCA 2 cut(s) 824, 872
MscI TGGCCA 2 cut(s) 824, 872
MseI TTAA 4 cut(s) 171, 405, 488, 543
MslI CAYNNNNRTG 2 cut(s) 453, 830
Msp20I TGGCCA 2 cut(s) 824, 872
MspA1I CMGCKG 1 cut(s) 924
MspI CCGG 2 cut(s) 738, 876
MwoI GCNNNNNNNGC 2 cut(s) 194, 781
NcoI CCATGG 1 cut(s) 825
NdeI CATATG 1 cut(s) 210
NdeII GATC 4 cut(s) 130, 226, 310, 655
NheI GCTAGC 1 cut(s) 56
NlaIII CATG 6 cut(s) 197, 206, 348, 368, 575, 829
NspI RCATGY 3 cut(s) 197, 348, 368
PaeR7I CTCGAG 1 cut(s) 793
PagI TCATGA 1 cut(s) 202
PaqCI CACCTGC 2 cut(s) 206, 899
PciI ACATGT 1 cut(s) 344
PinAI ACCGGT 1 cut(s) 737
PkrI GCNGC 8 cut(s) 127, 190, 330, 529, 641, 881, 923, 937
PscI ACATGT 1 cut(s) 344
PspXI VCTCGAGB 1 cut(s) 793
PsuI RGATCY 2 cut(s) 226, 655
RsaI GTAC 2 cut(s) 283, 566
RsaNI GTAC 2 cut(s) 282, 565
RseI CAYNNNNRTG 2 cut(s) 453, 830
SalI GTCGAC 1 cut(s) 624
SaqAI TTAA 4 cut(s) 171, 405, 488, 543
SatI GCNGC 8 cut(s) 126, 189, 329, 528, 640, 880, 922, 936
Sau3AI GATC 4 cut(s) 130, 226, 310, 655
ScaI AGTACT 1 cut(s) 283
SfaNI GCATC 5 cut(s) 61, 306, 539, 606, 762
Sfr274I CTCGAG 1 cut(s) 793
SgrAI CRCCGGYG 1 cut(s) 875
SlaI CTCGAG 1 cut(s) 793
SmiMI CAYNNNNRTG 2 cut(s) 453, 830
SmlI CTYRAG 2 cut(s) 581, 793
SmoI CTYRAG 2 cut(s) 581, 793
Sse9I AATT 4 cut(s) 84, 496, 544, 602
SsiI CCGC 5 cut(s) 50, 640, 879, 924, 935
SspI AATATT 2 cut(s) 164, 289
SspMI CTAG 5 cut(s) 57, 279, 636, 659, 677
StyI CCWWGG 2 cut(s) 506, 825
TaiI ACGT 1 cut(s) 631
TaqI TCGA 2 cut(s) 625, 794
TasI AATT 4 cut(s) 84, 496, 544, 602
TatI WGTACW 1 cut(s) 281
TauI GCSGC 3 cut(s) 642, 882, 938
Tru1I TTAA 4 cut(s) 171, 405, 488, 543
Tru9I TTAA 4 cut(s) 171, 405, 488, 543
TseI GCWGC 5 cut(s) 125, 188, 328, 527, 921
TspDTI ATGAA 3 cut(s) 17, 191, 263
XapI RAATTY 3 cut(s) 84, 496, 602
XceI RCATGY 3 cut(s) 197, 348, 368
XhoI CTCGAG 1 cut(s) 793
XmiI GTMKAC 1 cut(s) 625
XspI CTAG 5 cut(s) 57, 279, 636, 659, 677
ZraI GACGTC 1 cut(s) 629
ZrmI AGTACT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.