Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003282

Physical Location & Seq

Genomic Coordinates Forward (+)

17514060 .. 17516407

Gene Structure 2348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012330

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTTCAAAGCTAGGGTGTCTGCTACTCCTATACCTTCTCCATTTTTCATGGATAACAATGCAGGCCTAGGCCTATGGGTTCGCTTCTTTCTCTCTTTGACCGGTACGAGCTTGATGGTGGAGAGGGCGGAGCTTTCTGATTCTGTTGGAATGGACTGGCTGGGTTTCTTTGACCGCGGTGGTGGATTGAGGTGTGGATTAGTGATCAAACCTTGGGTCAGTGCTGATGTCCGGGTTAACACGAGAAGCGAATGGCTGGTTTTAATGGTCGACTACTGGCTCTGTACTTTTCGGCCCAAGTTGCTAGCCAGGGCTGATACCAGTGGCTGGGGTAGAGATGGTTGTAACATTGCAGTCTCTTTGACGGTGATCAACGGCGAAGGCGACGGCTTGATTGGCTGGGGTGGAAGTGGAGTGTCCTTAGTGATTTTGATCAATTGGGCCAACTGGGCCTGTGATAGGTGTGTGGCCGATCGAATTTGGGATCGGAGGTGCTTTGGAATGAGGGCAGGGGTCGTCTCGACCTGCAGTGGTGGATGGTTTGGCAACAAAGACGACTGGGCTGGCTTTCAGTCGTCGTCTGGGGCTTTACCAGTTGATGGATATGATGGAGATCTAGGGGTTGATTTAGGGCTGGTTTGGCTTGAGATTGGAAGCTATCGTGTTGGGATGATTACTCCCTCATCCAGAACAGCCAGTTTTGGTAGAAGTGGGATGTTGGATTCGGTGATGCAAGCGGAGCAACGCTGCTCGTGGATGGTTTCGGCGATGCAACCTCTGGCCGAGGCCGTTGGTCTCTTGCTTTGGTGGCTGTCAAGGTGGCATGGCTATCGGCGGCACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

282

Amino Acids

30.97

Weight (kDa)

6.72

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003282)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334151 RchiOBHm_Chr6g0275401
rosa_laevigata	RLG00000012330 RLG00000023103 RLG00000023473 RLG00000023476 RLG00000028751 RLG00000029476
rosa_multiflora	Rmu_co8467563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019700 Rroxscaffold_1G00039360 Rroxscaffold_3G00249990 Rroxscaffold_3G00275150 Rroxscaffold_6G00395480 Rroxscaffold_7G00190930
rosa_rugosa	Rorug03G0305200
rosa_samantha	Rh2AG435100 Rh2DG453400 Rh2DG691400 Rh3AG051100 Rh3BG052300 Rh3BG303700 Rh3CG052000 Rh3DG052700 Rh4AG232800 Rh4AG393900 Rh4BG028000 Rh4DG030700 Rh4DG400900 Rh5AG348100 Rh5AG355400 Rh5DG570200 Rh6AG205300 Rh6BG208300 Rh6BG518000 Rh7AG242500 Rh7AG438800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	533
AccB1I	GGYRCC	1 cut(s)	837
AccB7I	CCANNNNNTGG	2 cut(s)	327, 599
AccI	GTMKAC	1 cut(s)	270
AccII	CGCG	1 cut(s)	177
AciI	CCGC	5 cut(s)	128, 175, 177, 737, 835
AclWI	GGATC	1 cut(s)	492
AcoI	YGGCCR	2 cut(s)	468, 780
AcsI	RAATTY	1 cut(s)	477
AfaI	GTAC	2 cut(s)	106, 286
AfiI	CCNNNNNNNGG	3 cut(s)	327, 459, 599
AgeI	ACCGGT	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	7
AjnI	CCWGG	1 cut(s)	308
AluBI	AGCT	4 cut(s)	11, 111, 133, 657
AluI	AGCT	4 cut(s)	11, 111, 133, 657
Alw26I	GTCTC	3 cut(s)	361, 523, 800
AlwI	GGATC	1 cut(s)	492
AlwNI	CAGNNNCTG	1 cut(s)	327
AoxI	GGCC	8 cut(s)	64, 70, 293, 441, 450, 468, 780, 786
ApeKI	GCWGC	1 cut(s)	747
ApoI	RAATTY	1 cut(s)	477
ArsI	GACNNNNNNTTYG	2 cut(s)	201, 233
AsiGI	ACCGGT	1 cut(s)	101
AspA2I	CCTAGG	1 cut(s)	67
AspS9I	GGNCC	3 cut(s)	294, 441, 450
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	2 cut(s)	379, 739
AsuNHI	GCTAGC	1 cut(s)	304
AvrII	CCTAGG	1 cut(s)	67
BanI	GGYRCC	1 cut(s)	837
BauI	CACGAG	2 cut(s)	241, 751
BbvI	GCAGC	1 cut(s)	734
BccI	CCATC	6 cut(s)	109, 332, 531, 593, 602, 751
BceAI	ACGGC	3 cut(s)	391, 403, 773
BcgI	CGANNNNNNTGC	2 cut(s)	812, 846
BciT130I	CCWGG	1 cut(s)	310
BclI	TGATCA	3 cut(s)	204, 369, 432
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	3 cut(s)	361, 523, 800
BfaI	CTAG	4 cut(s)	12, 68, 305, 617
BfmI	CTRYAG	1 cut(s)	526
BfuAI	ACCTGC	1 cut(s)	533
BglI	GCCNNNNNGGC	1 cut(s)	449
BglII	AGATCT	1 cut(s)	613
BisI	GCNGC	2 cut(s)	748, 836
BlnI	CCTAGG	1 cut(s)	67
BlsI	GCNGC	2 cut(s)	749, 837
Bme1390I	CCNGG	2 cut(s)	233, 310
BmgT120I	GGNCC	3 cut(s)	294, 441, 450
BmiI	GGNNCC	1 cut(s)	839
BmrFI	CCNGG	2 cut(s)	233, 310
BmrI	ACTGGG	2 cut(s)	457, 568
BmsI	GCATC	2 cut(s)	720, 759
BmtI	GCTAGC	1 cut(s)	308
BmuI	ACTGGG	2 cut(s)	457, 568
BpuEI	CTTGAG	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	233
BsaBI	GATNNNNATC	2 cut(s)	431, 612
BsaI	GGTCTC	1 cut(s)	800
BsaJI	CCNNGG	5 cut(s)	67, 175, 212, 309, 783
BsaWI	WCCGGW	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	3 cut(s)	327, 459, 599
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	7 cut(s)	161, 281, 321, 452, 563, 593, 696
Bse3DI	GCAATG	1 cut(s)	348
Bse8I	GATNNNNATC	2 cut(s)	431, 612
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	5 cut(s)	67, 175, 212, 309, 783
BseGI	GGATG	5 cut(s)	542, 675, 683, 720, 762
BseJI	GATNNNNATC	2 cut(s)	431, 612
BseLI	CCNNNNNNNGG	3 cut(s)	327, 459, 599
BseMI	GCAATG	1 cut(s)	348
BseNI	ACTGG	7 cut(s)	161, 281, 321, 452, 563, 593, 696
BseXI	GCAGC	1 cut(s)	734
BseYI	CCCAGC	3 cut(s)	160, 327, 399
Bsh1236I	CGCG	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	475
BshFI	GGCC	8 cut(s)	66, 72, 295, 443, 452, 470, 782, 788
BshNI	GGYRCC	1 cut(s)	837
BshTI	ACCGGT	1 cut(s)	101
BsiEI	CGRYCG	1 cut(s)	475
BsiSI	CCGG	2 cut(s)	102, 232
BslI	CCNNNNNNNGG	3 cut(s)	327, 459, 599
BsmAI	GTCTC	3 cut(s)	361, 523, 800
BsmBI	CGTCTC	1 cut(s)	523
BsnI	GGCC	8 cut(s)	66, 72, 295, 443, 452, 470, 782, 788
Bso31I	GGTCTC	1 cut(s)	800
Bsp143I	GATC	6 cut(s)	204, 369, 432, 472, 484, 613
BspACI	CCGC	5 cut(s)	128, 175, 177, 737, 835
BspANI	GGCC	8 cut(s)	66, 72, 295, 443, 452, 470, 782, 788
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	839
BspMAI	CTGCAG	1 cut(s)	530
BspMI	ACCTGC	1 cut(s)	533
BspOI	GCTAGC	1 cut(s)	308
BspPI	GGATC	1 cut(s)	492
BspT107I	GGYRCC	1 cut(s)	837
BspTNI	GGTCTC	1 cut(s)	800
BsrDI	GCAATG	1 cut(s)	348
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	7 cut(s)	161, 281, 321, 452, 563, 593, 696
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	5 cut(s)	67, 175, 212, 309, 783
BssMI	GATC	6 cut(s)	204, 369, 432, 472, 484, 613
BssSI	CACGAG	2 cut(s)	241, 751
BssT1I	CCWWGG	2 cut(s)	67, 212
Bst2BI	CACGAG	2 cut(s)	241, 751
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	1 cut(s)	367
BstC8I	GCNNGC	4 cut(s)	64, 306, 565, 735
BstDEI	CTNAG	1 cut(s)	421
BstDSI	CCRYGG	1 cut(s)	175
BstENI	CCTNNNNNAGG	1 cut(s)	457
BstF5I	GGATG	5 cut(s)	542, 675, 683, 720, 762
BstFNI	CGCG	1 cut(s)	177
BstKTI	GATC	6 cut(s)	207, 372, 435, 475, 487, 616
BstMAI	GTCTC	3 cut(s)	361, 523, 800
BstMBI	GATC	6 cut(s)	204, 369, 432, 472, 484, 613
BstMCI	CGRYCG	1 cut(s)	475
BstMWI	GCNNNNNNNGC	6 cut(s)	301, 396, 449, 640, 739, 808
BstNI	CCWGG	1 cut(s)	310
BstSCI	CCNGG	2 cut(s)	231, 308
BstSFI	CTRYAG	1 cut(s)	526
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	734
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BsuRI	GGCC	8 cut(s)	66, 72, 295, 443, 452, 470, 782, 788
BtgI	CCRYGG	1 cut(s)	175
BtgZI	GCGATG	1 cut(s)	782
BtsCI	GGATG	5 cut(s)	542, 675, 683, 720, 762
BtsI	GCAGTG	1 cut(s)	535
BtsIMutI	CAGTG	3 cut(s)	226, 328, 535
BveI	ACCTGC	1 cut(s)	533
Cac8I	GCNNGC	4 cut(s)	64, 306, 565, 735
CaiI	CAGNNNCTG	1 cut(s)	327
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	3 cut(s)	294, 441, 450
Cfr42I	CCGCGG	1 cut(s)	178
Csp6I	GTAC	2 cut(s)	105, 285
CspAI	ACCGGT	1 cut(s)	101
CviAII	CATG	2 cut(s)	49, 824
CviQI	GTAC	2 cut(s)	105, 285
DdeI	CTNAG	1 cut(s)	421
DpnI	GATC	6 cut(s)	206, 371, 434, 474, 486, 615
DpnII	GATC	6 cut(s)	204, 369, 432, 472, 484, 613
EaeI	YGGCCR	2 cut(s)	468, 780
EciI	GGCGGA	1 cut(s)	143
Eco130I	CCWWGG	2 cut(s)	67, 212
Eco147I	AGGCCT	2 cut(s)	66, 72
Eco31I	GGTCTC	1 cut(s)	800
EcoNI	CCTNNNNNAGG	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	308
EcoT14I	CCWWGG	2 cut(s)	67, 212
ErhI	CCWWGG	2 cut(s)	67, 212
Esp3I	CGTCTC	1 cut(s)	523
FaeI	CATG	2 cut(s)	52, 827
FaiI	YATR	5 cut(s)	32, 50, 76, 606, 825
FatI	CATG	2 cut(s)	48, 823
FbaI	TGATCA	3 cut(s)	204, 369, 432
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	748, 836
FokI	GGATG	5 cut(s)	549, 670, 682, 727, 769
Fsp4HI	GCNGC	2 cut(s)	748, 836
FspBI	CTAG	4 cut(s)	12, 68, 305, 617
GluI	GCNGC	2 cut(s)	748, 836
GsaI	CCCAGC	3 cut(s)	164, 331, 403
HaeIII	GGCC	8 cut(s)	66, 72, 295, 443, 452, 470, 782, 788
HapII	CCGG	2 cut(s)	102, 232
Hin1II	CATG	2 cut(s)	52, 827
HincII	GTYRAC	2 cut(s)	238, 271
HindII	GTYRAC	2 cut(s)	238, 271
HinfI	GANTC	2 cut(s)	140, 722
HpaI	GTTAAC	1 cut(s)	238
HpaII	CCGG	2 cut(s)	102, 232
HphI	GGTGA	2 cut(s)	379, 739
Hpy166II	GTNNAC	2 cut(s)	238, 271
Hpy188I	TCNGA	3 cut(s)	139, 489, 845
Hpy188III	TCNNGA	2 cut(s)	520, 687
Hpy8I	GTNNAC	2 cut(s)	238, 271
Hpy99I	CGWCG	2 cut(s)	389, 580
HpyAV	CCTTC	2 cut(s)	45, 374
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	5 cut(s)	62, 353, 528, 733, 772
HpyF10VI	GCNNNNNNNGC	6 cut(s)	301, 396, 449, 640, 739, 808
HpyF3I	CTNAG	1 cut(s)	421
Hsp92II	CATG	2 cut(s)	52, 827
Ksp22I	TGATCA	3 cut(s)	204, 369, 432
KspAI	GTTAAC	1 cut(s)	238
KspI	CCGCGG	1 cut(s)	178
Kzo9I	GATC	6 cut(s)	204, 369, 432, 472, 484, 613
LmnI	GCTCC	2 cut(s)	130, 739
Lsp1109I	GCAGC	1 cut(s)	734
LweI	GCATC	2 cut(s)	720, 759
MaeI	CTAG	4 cut(s)	12, 68, 305, 617
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	6 cut(s)	206, 371, 434, 474, 486, 615
MboI	GATC	6 cut(s)	204, 369, 432, 472, 484, 613
MfeI	CAATTG	1 cut(s)	436
MflI	RGATCY	1 cut(s)	613
MluCI	AATT	2 cut(s)	436, 477
MmeI	TCCRAC	2 cut(s)	127, 699
MnlI	CCTC	7 cut(s)	117, 183, 483, 498, 691, 778, 786
MseI	TTAA	2 cut(s)	237, 263
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	2 cut(s)	102, 232
MspR9I	CCNGG	2 cut(s)	233, 310
MunI	CAATTG	1 cut(s)	436
MvaI	CCWGG	1 cut(s)	310
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	6 cut(s)	301, 396, 449, 640, 739, 808
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	6 cut(s)	204, 369, 432, 472, 484, 613
NheI	GCTAGC	1 cut(s)	304
NlaIII	CATG	2 cut(s)	52, 827
NlaIV	GGNNCC	1 cut(s)	839
NmeAIII	GCCGAG	1 cut(s)	808
PceI	AGGCCT	2 cut(s)	66, 72
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	140, 722
PflMI	CCANNNNNTGG	2 cut(s)	327, 599
PinAI	ACCGGT	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	749, 837
Ple19I	CGATCG	1 cut(s)	475
Psp6I	CCWGG	1 cut(s)	308
PspFI	CCCAGC	3 cut(s)	160, 327, 399
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	1 cut(s)	839
PspPI	GGNCC	3 cut(s)	294, 441, 450
PstI	CTGCAG	1 cut(s)	530
PstNI	CAGNNNCTG	1 cut(s)	327
PsuI	RGATCY	1 cut(s)	613
PvuI	CGATCG	1 cut(s)	475
RsaI	GTAC	2 cut(s)	106, 286
RsaNI	GTAC	2 cut(s)	105, 285
SacII	CCGCGG	1 cut(s)	178
SalI	GTCGAC	1 cut(s)	269
SaqAI	TTAA	2 cut(s)	237, 263
SatI	GCNGC	2 cut(s)	748, 836
Sau3AI	GATC	6 cut(s)	204, 369, 432, 472, 484, 613
Sau96I	GGNCC	3 cut(s)	294, 441, 450
ScrFI	CCNGG	2 cut(s)	233, 310
SfaNI	GCATC	2 cut(s)	720, 759
SfcI	CTRYAG	1 cut(s)	526
SfiI	GGCCNNNNNGGCC	1 cut(s)	449
Sfr303I	CCGCGG	1 cut(s)	178
SgrBI	CCGCGG	1 cut(s)	178
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	2 cut(s)	436, 477
SseBI	AGGCCT	2 cut(s)	66, 72
SsiI	CCGC	5 cut(s)	128, 175, 177, 737, 835
SspMI	CTAG	4 cut(s)	12, 68, 305, 617
StuI	AGGCCT	2 cut(s)	66, 72
StyD4I	CCNGG	2 cut(s)	231, 308
StyI	CCWWGG	2 cut(s)	67, 212
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	3 cut(s)	270, 475, 521
TasI	AATT	2 cut(s)	436, 477
TatI	WGTACW	1 cut(s)	284
TauI	GCSGC	1 cut(s)	838
TfiI	GAWTC	2 cut(s)	140, 722
Tru1I	TTAA	2 cut(s)	237, 263
Tru9I	TTAA	2 cut(s)	237, 263
TscAI	CASTG	3 cut(s)	226, 328, 535
TseI	GCWGC	1 cut(s)	747
TspDTI	ATGAA	1 cut(s)	37
TspRI	CASTG	3 cut(s)	226, 328, 535
Van91I	CCANNNNNTGG	2 cut(s)	327, 599
XagI	CCTNNNNNAGG	1 cut(s)	457
XapI	RAATTY	1 cut(s)	477
XmaJI	CCTAGG	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	270
XspI	CTAG	4 cut(s)	12, 68, 305, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.