Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Reverse (-)

31922087 .. 31924847

Gene Structure 2761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56712

Sequence Viewer

CDS Protein Promoter (2k)

Length: 132 bp

ATGGGCAGCAAGGCCCACACCTCAATGCTCCCCAAACAGGGATTCATCACTGTCGAGAATAGGGTTAGCATTCATGAAGGGACTACGGAGATTCAGAGGCGAATTGAGGAGATAGGGAAGATGTGTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004056 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016842 GO:0019752 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 map00220 map00250 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

ASL_C2 Lyase_1

Protein Analysis

43

Amino Acids

4.88

Weight (kDa)

7.98

Isoelectric Point (pI)

74.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	2 cut(s)	37, 38
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	18
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 38
BseLI	CCNNNNNNNGG	2 cut(s)	37, 38
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	18
BshFI	GGCC	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	2 cut(s)	37, 38
BsmFI	GGGAC	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	69
BsnI	GGCC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	14
BspHI	TCATGA	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	48
CciI	TCATGA	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	13
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	1 cut(s)	14
CviKI_1	RGCY	1 cut(s)	14
FaeI	CATG	1 cut(s)	77
FaiI	YATR	2 cut(s)	75, 128
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	1 cut(s)	73
Fnu4HI	GCNGC	1 cut(s)	7
Fsp4HI	GCNGC	1 cut(s)	7
GluI	GCNGC	1 cut(s)	7
HaeIII	GGCC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	77
HinfI	GANTC	2 cut(s)	42, 91
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	2 cut(s)	55, 74
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	52
Hsp92II	CATG	1 cut(s)	77
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	1 cut(s)	23
Lsp1109I	GCAGC	1 cut(s)	18
MboII	GAAGA	1 cut(s)	130
MluCI	AATT	1 cut(s)	102
MnlI	CCTC	3 cut(s)	31, 90, 100
MslI	CAYNNNNRTG	1 cut(s)	23
Mva1269I	GAATGC	1 cut(s)	69
NlaIII	CATG	1 cut(s)	77
PagI	TCATGA	1 cut(s)	73
PctI	GAATGC	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	42, 91
PkrI	GCNGC	1 cut(s)	8
PspPI	GGNCC	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	23
SatI	GCNGC	1 cut(s)	7
Sau96I	GGNCC	1 cut(s)	13
SetI	ASST	1 cut(s)	23
SgeI	CNNG	4 cut(s)	22, 50, 67, 86
SmiMI	CAYNNNNRTG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	1 cut(s)	54
TasI	AATT	1 cut(s)	102
TfiI	GAWTC	2 cut(s)	42, 91
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	1 cut(s)	6
TspDTI	ATGAA	3 cut(s)	34, 62, 90
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.