Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002912.1

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Forward (+)

13210 .. 13850

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002912.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgcccaagctcgacctccactgcgctgccaccgagcccaagctccagggaggccgcttcgaggagggcatcaccgatgccatcgagctcttcaccgacgccgtcgagcccttcaccgagtccatctccttcgacaaagccctctacaagcatgacatcatgggcagcaaggcccacgcctcaatgctccccaaacagcttccagctcgatttctcaacttccataatgccgctcggctcttctccgatgcggctcctccctccggagagcctccgtcgattccactgcctccttcaattaatatggttctatgcctcagacaccctatactccgcgccgccttcaatctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004056 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016842 GO:0019752 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 map00220 map00250 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

ASL_C2 Lyase_1

Protein Analysis

117

Amino Acids

12.85

Weight (kDa)

6.17

Isoelectric Point (pI)

60.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	233
AccII	CGCG	1 cut(s)	336
AccIII	TCCGGA	1 cut(s)	263
AciI	CCGC	5 cut(s)	55, 231, 251, 334, 339
AcyI	GRCGYC	1 cut(s)	99
AfiI	CCNNNNNNNGG	2 cut(s)	61, 263
AgsI	TTSAA	2 cut(s)	297, 346
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	5 cut(s)	10, 43, 88, 199, 206
AluI	AGCT	5 cut(s)	10, 43, 88, 199, 206
Alw21I	GWGCWC	1 cut(s)	90
Aor13HI	TCCGGA	1 cut(s)	263
AoxI	GGCC	2 cut(s)	52, 171
ApeKI	GCWGC	2 cut(s)	26, 165
AseI	ATTAAT	1 cut(s)	300
AspLEI	GCGC	2 cut(s)	26, 338
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	3 cut(s)	64, 85, 106
BanII	GRGCYC	3 cut(s)	39, 90, 111
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	13, 177
BccI	CCATC	2 cut(s)	89, 131
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BciT130I	CCWGG	1 cut(s)	47
BisI	GCNGC	6 cut(s)	27, 55, 166, 231, 252, 339
BlsI	GCNGC	6 cut(s)	28, 56, 167, 232, 253, 340
Bme1390I	CCNGG	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	3 cut(s)	67, 78, 238
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
BpmI	CTGGAG	1 cut(s)	29
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	46
BsaWI	WCCGGW	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 263
BseAI	TCCGGA	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	46
BseLI	CCNNNNNNNGG	2 cut(s)	61, 263
BseMII	CTCAG	1 cut(s)	331
BseRI	GAGGAG	2 cut(s)	77, 246
BseXI	GCAGC	2 cut(s)	13, 177
Bsh1236I	CGCG	1 cut(s)	336
BshFI	GGCC	2 cut(s)	54, 173
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	264
BslI	CCNNNNNNNGG	2 cut(s)	61, 263
BsnI	GGCC	2 cut(s)	54, 173
Bsp1286I	GDGCHC	3 cut(s)	39, 90, 111
Bsp13I	TCCGGA	1 cut(s)	263
BspACI	CCGC	5 cut(s)	55, 231, 251, 334, 339
BspANI	GGCC	2 cut(s)	54, 173
BspCNI	CTCAG	1 cut(s)	330
BspEI	TCCGGA	1 cut(s)	263
BspFNI	CGCG	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	255
BspQI	GCTCTTC	2 cut(s)	95, 245
BsrBI	CCGCTC	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	46
BssNI	GRCGYC	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	47
Bst6I	CTCTTC	2 cut(s)	95, 245
BstACI	GRCGYC	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	317
BstFNI	CGCG	1 cut(s)	336
BstHHI	GCGC	2 cut(s)	26, 338
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	2 cut(s)	13, 177
BsuRI	GGCC	2 cut(s)	54, 173
BtsI	GCAGTG	2 cut(s)	19, 284
BtsIMutI	CAGTG	2 cut(s)	19, 284
CfoI	GCGC	2 cut(s)	26, 338
Cfr13I	GGNCC	1 cut(s)	172
CseI	GACGC	1 cut(s)	107
CviAII	CATG	2 cut(s)	152, 160
DdeI	CTNAG	1 cut(s)	317
Eam1104I	CTCTTC	2 cut(s)	95, 245
EarI	CTCTTC	2 cut(s)	95, 245
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	3 cut(s)	39, 90, 111
Eco53kI	GAGCTC	1 cut(s)	88
EcoICRI	GAGCTC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	45
EcoT38I	GRGCYC	3 cut(s)	39, 90, 111
FaeI	CATG	2 cut(s)	155, 163
FaiI	YATR	6 cut(s)	153, 161, 225, 305, 313, 329
FatI	CATG	2 cut(s)	151, 159
Fnu4HI	GCNGC	6 cut(s)	27, 55, 166, 231, 252, 339
FriOI	GRGCYC	3 cut(s)	39, 90, 111
Fsp4HI	GCNGC	6 cut(s)	27, 55, 166, 231, 252, 339
GlaI	GCGC	2 cut(s)	25, 337
GluI	GCNGC	6 cut(s)	27, 55, 166, 231, 252, 339
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	54, 173
HapII	CCGG	1 cut(s)	264
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	2 cut(s)	26, 338
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	2 cut(s)	155, 163
Hin6I	GCGC	2 cut(s)	24, 336
HinP1I	GCGC	2 cut(s)	24, 336
HinfI	GANTC	2 cut(s)	119, 280
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	3 cut(s)	64, 85, 106
Hpy188I	TCNGA	2 cut(s)	247, 320
Hpy188III	TCNNGA	1 cut(s)	264
Hpy99I	CGWCG	3 cut(s)	101, 107, 280
HpyAV	CCTTC	4 cut(s)	121, 139, 303, 352
HpyF3I	CTNAG	1 cut(s)	317
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	155, 163
HspAI	GCGC	2 cut(s)	24, 336
Kpn2I	TCCGGA	1 cut(s)	263
LguI	GCTCTTC	2 cut(s)	95, 245
LmnI	GCTCC	3 cut(s)	48, 192, 259
LpnPI	CCDG	4 cut(s)	32, 59, 216, 277
Lsp1109I	GCAGC	2 cut(s)	13, 177
LweI	GCATC	3 cut(s)	67, 78, 238
MbiI	CCGCTC	1 cut(s)	233
MboII	GAAGA	2 cut(s)	82, 232
MhlI	GDGCHC	3 cut(s)	39, 90, 111
MluCI	AATT	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	128
MroI	TCCGGA	1 cut(s)	263
MseI	TTAA	1 cut(s)	300
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	336
NlaIII	CATG	2 cut(s)	155, 163
NlaIV	GGNNCC	1 cut(s)	255
NmeAIII	GCCGAG	1 cut(s)	214
PciSI	GCTCTTC	2 cut(s)	95, 245
PfeI	GAWTC	1 cut(s)	280
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	6 cut(s)	28, 56, 167, 232, 253, 340
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PshBI	ATTAAT	1 cut(s)	300
Psp124BI	GAGCTC	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	172
PsyI	GACNNNGTC	1 cut(s)	101
SacI	GAGCTC	1 cut(s)	90
SapI	GCTCTTC	2 cut(s)	95, 245
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	6 cut(s)	27, 55, 166, 231, 252, 339
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	3 cut(s)	39, 90, 111
SetI	ASST	6 cut(s)	12, 18, 45, 90, 201, 208
SfaNI	GCATC	3 cut(s)	67, 78, 238
Sse9I	AATT	1 cut(s)	297
SsiI	CCGC	5 cut(s)	55, 231, 251, 334, 339
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	45
TaqI	TCGA	7 cut(s)	12, 60, 84, 105, 132, 208, 278
TasI	AATT	1 cut(s)	297
TauI	GCSGC	4 cut(s)	57, 233, 254, 341
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	2 cut(s)	26, 291
TseI	GCWGC	2 cut(s)	26, 165
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	2 cut(s)	26, 291
Tth111I	GACNNNGTC	1 cut(s)	101
VspI	ATTAAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.