Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Reverse (-)

389964 .. 393603

Gene Structure 3640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21889

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTTGCCGTCGCAAACATATACATTTATTAAAAAACCACCTCTCTATCACTCCTCTTCCTCACTTACCCACCACTCCCTTCCCAAACCTCAACTGGCGATCACACCCTCCTCTCACAGATCCATGCCCAAGCTCGACCTCCACTGCGCTGCCACCGAGCCCAAGCTCCAGGGAGGCCGCTTCGAGGAGGGCATCACCGATGCCATCGAGCTCTTCACCGACGCCGTCGAGCCCTTCACCGAGTCTTTCTCCTTCGACAAAGCCCTCTACAAGCATGACATCATGGGCAGCAAGGCCCACGCCTCAATGCTCCCCAAACAGTCTTTAGCTTCCAGCTCGATTTCTCAACTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004056 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016842 GO:0019752 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 map00220 map00250 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

ASL_C2 Lyase_1

Protein Analysis

118

Amino Acids

13.0

Weight (kDa)

7.06

Isoelectric Point (pI)

66.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	178
AclWI	GGATC	1 cut(s)	114
AcyI	GRCGYC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	5 cut(s)	133, 166, 211, 329, 336
AluI	AGCT	5 cut(s)	133, 166, 211, 329, 336
Alw21I	GWGCWC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	114
AoxI	GGCC	2 cut(s)	175, 294
ApeKI	GCWGC	2 cut(s)	149, 288
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	3 cut(s)	187, 208, 229
BanII	GRGCYC	3 cut(s)	162, 213, 234
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	136, 300
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	170
BisI	GCNGC	3 cut(s)	150, 178, 289
BlsI	GCNGC	3 cut(s)	151, 179, 290
Bme1390I	CCNGG	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	295
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	2 cut(s)	190, 201
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
BpmI	CTGGAG	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseNI	ACTGG	1 cut(s)	99
BseRI	GAGGAG	3 cut(s)	43, 100, 200
BseXI	GCAGC	2 cut(s)	136, 300
BshFI	GGCC	2 cut(s)	177, 296
BsiHKAI	GWGCWC	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	184
BsnI	GGCC	2 cut(s)	177, 296
Bsp1286I	GDGCHC	3 cut(s)	162, 213, 234
Bsp143I	GATC	2 cut(s)	99, 119
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	2 cut(s)	177, 296
BspPI	GGATC	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	2 cut(s)	99, 119
BssNI	GRCGYC	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	321
Bst6I	CTCTTC	2 cut(s)	61, 218
BstACI	GRCGYC	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	2 cut(s)	102, 122
BstMBI	GATC	2 cut(s)	99, 119
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	136, 300
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	177, 296
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	142
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	295
CseI	GACGC	1 cut(s)	230
CviAII	CATG	3 cut(s)	124, 275, 283
DpnI	GATC	2 cut(s)	101, 121
DpnII	GATC	2 cut(s)	99, 119
Eam1104I	CTCTTC	2 cut(s)	61, 218
EarI	CTCTTC	2 cut(s)	61, 218
Ecl136II	GAGCTC	1 cut(s)	211
Eco24I	GRGCYC	3 cut(s)	162, 213, 234
Eco53kI	GAGCTC	1 cut(s)	211
EcoICRI	GAGCTC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	168
EcoT38I	GRGCYC	3 cut(s)	162, 213, 234
FaeI	CATG	3 cut(s)	127, 278, 286
FaiI	YATR	6 cut(s)	19, 21, 125, 276, 284, 355
FatI	CATG	3 cut(s)	123, 274, 282
Fnu4HI	GCNGC	3 cut(s)	150, 178, 289
FriOI	GRGCYC	3 cut(s)	162, 213, 234
Fsp4HI	GCNGC	3 cut(s)	150, 178, 289
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	3 cut(s)	150, 178, 289
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	177, 296
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	149
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	127, 278, 286
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	1 cut(s)	242
HphI	GGTGA	3 cut(s)	187, 208, 229
Hpy99I	CGWCG	3 cut(s)	13, 224, 230
HpyAV	CCTTC	3 cut(s)	89, 244, 262
HpyCH4III	ACNGT	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	127, 278, 286
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	99, 119
LguI	GCTCTTC	1 cut(s)	218
LmnI	GCTCC	2 cut(s)	171, 315
LpnPI	CCDG	4 cut(s)	80, 155, 182, 346
Lsp1109I	GCAGC	2 cut(s)	136, 300
LweI	GCATC	2 cut(s)	190, 201
MalI	GATC	2 cut(s)	101, 121
MboI	GATC	2 cut(s)	99, 119
MboII	GAAGA	2 cut(s)	48, 205
MflI	RGATCY	1 cut(s)	119
MhlI	GDGCHC	3 cut(s)	162, 213, 234
MlyI	GAGTC	1 cut(s)	251
MseI	TTAA	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
NdeII	GATC	2 cut(s)	99, 119
NlaIII	CATG	3 cut(s)	127, 278, 286
PciSI	GCTCTTC	1 cut(s)	218
PflFI	GACNNNGTC	1 cut(s)	224
PkrI	GCNGC	3 cut(s)	151, 179, 290
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	119
PsyI	GACNNNGTC	1 cut(s)	224
SacI	GAGCTC	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	3 cut(s)	150, 178, 289
Sau3AI	GATC	2 cut(s)	99, 119
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	3 cut(s)	162, 213, 234
SetI	ASST	8 cut(s)	43, 91, 135, 141, 168, 213, 331, 338
SfaNI	GCATC	2 cut(s)	190, 201
SsiI	CCGC	1 cut(s)	178
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	321
TaqI	TCGA	6 cut(s)	135, 183, 207, 228, 255, 338
TauI	GCSGC	1 cut(s)	180
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	149
TseI	GCWGC	2 cut(s)	149, 288
TspRI	CASTG	1 cut(s)	149
Tth111I	GACNNNGTC	1 cut(s)	224
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.