Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013073.1

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Reverse (-)

7529 .. 8164

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013073.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgcccaagctcgacctccactgcgctgccaccgagcccaataagctccagggaggccgcttcgaggagggcatcactgactccatcgagcgcttcaacgacgccgtcgagcccttcaccgagtccatctccttcgacaaagccctctacaagtatgacatcatgggcagcaaggcccacgcctcaatgctccccaaacagctcttctccgatgcacctcctccctccggagagcctccttcgattccaccacctccttcaattaatatggttctatgcctcagacaccctctactccgcgccgccttcaatctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004056 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016842 GO:0019752 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 map00220 map00250 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

ASL_C2 Lyase_1

Protein Analysis

105

Amino Acids

11.56

Weight (kDa)

5.5

Isoelectric Point (pI)

70.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	300
AccIII	TCCGGA	1 cut(s)	227
AciI	CCGC	3 cut(s)	58, 298, 303
AcyI	GRCGYC	1 cut(s)	102
AfeI	AGCGCT	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	64, 227
AgsI	TTSAA	3 cut(s)	97, 261, 310
AjnI	CCWGG	1 cut(s)	48
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	3 cut(s)	10, 46, 202
AluI	AGCT	3 cut(s)	10, 46, 202
Aor13HI	TCCGGA	1 cut(s)	227
Aor51HI	AGCGCT	1 cut(s)	92
AoxI	GGCC	2 cut(s)	55, 174
ApeKI	GCWGC	2 cut(s)	26, 168
AseI	ATTAAT	1 cut(s)	264
AspLEI	GCGC	3 cut(s)	26, 93, 302
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	109
BanII	GRGCYC	2 cut(s)	39, 114
BbvI	GCAGC	2 cut(s)	13, 180
BccI	CCATC	2 cut(s)	92, 134
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	50
BfoI	RGCGCY	1 cut(s)	94
BisI	GCNGC	4 cut(s)	27, 58, 169, 303
BlsI	GCNGC	4 cut(s)	28, 59, 170, 304
Bme1390I	CCNGG	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	2 cut(s)	81, 202
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BpmI	CTGGAG	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	49
BsaWI	WCCGGW	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 227
BseAI	TCCGGA	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	49
BseLI	CCNNNNNNNGG	2 cut(s)	64, 227
BseMII	CTCAG	1 cut(s)	295
BseRI	GAGGAG	2 cut(s)	80, 210
BseXI	GCAGC	2 cut(s)	13, 180
Bsh1236I	CGCG	1 cut(s)	300
BshFI	GGCC	2 cut(s)	57, 176
BsiSI	CCGG	1 cut(s)	228
BslI	CCNNNNNNNGG	2 cut(s)	64, 227
BsnI	GGCC	2 cut(s)	57, 176
Bsp1286I	GDGCHC	2 cut(s)	39, 114
Bsp13I	TCCGGA	1 cut(s)	227
BspACI	CCGC	3 cut(s)	58, 298, 303
BspANI	GGCC	2 cut(s)	57, 176
BspCNI	CTCAG	1 cut(s)	294
BspEI	TCCGGA	1 cut(s)	227
BspFNI	CGCG	1 cut(s)	300
BspQI	GCTCTTC	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	49
BssNI	GRCGYC	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	209
BstACI	GRCGYC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	281
BstFNI	CGCG	1 cut(s)	300
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	3 cut(s)	26, 93, 302
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	2 cut(s)	13, 180
BsuRI	GGCC	2 cut(s)	57, 176
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	19, 75
CfoI	GCGC	3 cut(s)	26, 93, 302
Cfr13I	GGNCC	1 cut(s)	175
CseI	GACGC	1 cut(s)	110
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	9 cut(s)	10, 37, 46, 57, 112, 143, 176, 202, 235
CviKI_1	RGCY	9 cut(s)	10, 37, 46, 57, 112, 143, 176, 202, 235
DdeI	CTNAG	1 cut(s)	281
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
Eco24I	GRGCYC	2 cut(s)	39, 114
Eco47III	AGCGCT	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	48
EcoT38I	GRGCYC	2 cut(s)	39, 114
FaeI	CATG	1 cut(s)	166
FaiI	YATR	4 cut(s)	156, 164, 269, 277
FatI	CATG	1 cut(s)	162
Fnu4HI	GCNGC	4 cut(s)	27, 58, 169, 303
FriOI	GRGCYC	2 cut(s)	39, 114
Fsp4HI	GCNGC	4 cut(s)	27, 58, 169, 303
GlaI	GCGC	3 cut(s)	25, 92, 301
GluI	GCNGC	4 cut(s)	27, 58, 169, 303
GsuI	CTGGAG	1 cut(s)	32
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	2 cut(s)	57, 176
HapII	CCGG	1 cut(s)	228
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	3 cut(s)	26, 93, 302
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	3 cut(s)	24, 91, 300
HinP1I	GCGC	3 cut(s)	24, 91, 300
HinfI	GANTC	3 cut(s)	80, 122, 244
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	1 cut(s)	109
Hpy188I	TCNGA	2 cut(s)	211, 284
Hpy188III	TCNNGA	1 cut(s)	228
Hpy99I	CGWCG	2 cut(s)	104, 110
HpyAV	CCTTC	5 cut(s)	124, 142, 249, 267, 316
HpyCH4V	TGCA	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	1 cut(s)	281
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	3 cut(s)	24, 91, 300
Kpn2I	TCCGGA	1 cut(s)	227
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	2 cut(s)	51, 195
LpnPI	CCDG	3 cut(s)	35, 62, 241
Lsp1109I	GCAGC	2 cut(s)	13, 180
LweI	GCATC	2 cut(s)	81, 202
MboII	GAAGA	1 cut(s)	196
MhlI	GDGCHC	2 cut(s)	39, 114
MluCI	AATT	1 cut(s)	261
MlyI	GAGTC	2 cut(s)	74, 131
MroI	TCCGGA	1 cut(s)	227
MseI	TTAA	1 cut(s)	264
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	166
PciSI	GCTCTTC	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	244
PflFI	GACNNNGTC	1 cut(s)	104
PkrI	GCNGC	4 cut(s)	28, 59, 170, 304
PleI	GAGTC	2 cut(s)	74, 130
PpsI	GAGTC	2 cut(s)	74, 130
PshBI	ATTAAT	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	175
PsyI	GACNNNGTC	1 cut(s)	104
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	4 cut(s)	27, 58, 169, 303
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	2 cut(s)	74, 131
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	2 cut(s)	39, 114
SetI	ASST	6 cut(s)	12, 18, 48, 204, 220, 256
SfaNI	GCATC	2 cut(s)	81, 202
Sse9I	AATT	1 cut(s)	261
SsiI	CCGC	3 cut(s)	58, 298, 303
StyD4I	CCNGG	1 cut(s)	48
TaqI	TCGA	6 cut(s)	12, 63, 87, 108, 135, 242
TasI	AATT	1 cut(s)	261
TauI	GCSGC	2 cut(s)	60, 305
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	26, 82
TseI	GCWGC	2 cut(s)	26, 168
TspRI	CASTG	2 cut(s)	26, 82
Tth111I	GACNNNGTC	1 cut(s)	104
VspI	ATTAAT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.