Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000177

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Forward (+)

18716 .. 19342

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_177G00434090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCCCAAGCTCTACCTCCACTGCGCTGCCATCGAGCCCAAGCTCCAGGGAGGCCGCTTCGAGGAGGGCATCACCGATGCCATCGAGCTCTTCACTGACGTCGTCGAGCCCTTCACCGAGTCCATCTCCTTCGACAAAGCCCTCTACAAGCATGACATCATGGGCAGCAAGGCCCACGCCTCAATGCTCCCCAAACAGCTTCCAGCTCGATTTCTCAACTTCCATAATGCCGCTCGGCTCTTCTCCGATGCGCCTCCTCCCTCCGGAGAGCCTCCGTCGATTCCATTGCCTCCTTCAATTAATATGGTTCTATGCCTCAGACACCCTATACTCCGCGCCGCCTTTAATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004056 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016842 GO:0019752 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 map00220 map00250 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

ASL_C2 Lyase_1

Protein Analysis

117

Amino Acids

12.96

Weight (kDa)

6.5

Isoelectric Point (pI)

64.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
AccBSI	CCGCTC	1 cut(s)	233
AccII	CGCG	1 cut(s)	336
AccIII	TCCGGA	1 cut(s)	263
AciI	CCGC	4 cut(s)	55, 231, 334, 339
AcyI	GRCGYC	1 cut(s)	99
AfiI	CCNNNNNNNGG	2 cut(s)	61, 263
AgsI	TTSAA	1 cut(s)	297
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	5 cut(s)	10, 43, 88, 199, 206
AluI	AGCT	5 cut(s)	10, 43, 88, 199, 206
Alw21I	GWGCWC	1 cut(s)	90
Aor13HI	TCCGGA	1 cut(s)	263
AoxI	GGCC	2 cut(s)	52, 171
ApeKI	GCWGC	2 cut(s)	26, 165
AseI	ATTAAT	1 cut(s)	300
AspLEI	GCGC	3 cut(s)	26, 253, 338
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	2 cut(s)	64, 106
BanII	GRGCYC	3 cut(s)	39, 90, 111
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	13, 177
BccI	CCATC	3 cut(s)	38, 89, 131
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BciT130I	CCWGG	1 cut(s)	47
BisI	GCNGC	5 cut(s)	27, 55, 166, 231, 339
BlsI	GCNGC	5 cut(s)	28, 56, 167, 232, 340
Bme1390I	CCNGG	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	172
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	3 cut(s)	67, 78, 238
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
BpmI	CTGGAG	1 cut(s)	29
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	46
BsaWI	WCCGGW	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 263
Bse3DI	GCAATG	1 cut(s)	284
BseAI	TCCGGA	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	46
BseLI	CCNNNNNNNGG	2 cut(s)	61, 263
BseMI	GCAATG	1 cut(s)	284
BseMII	CTCAG	1 cut(s)	331
BseRI	GAGGAG	2 cut(s)	77, 246
BseXI	GCAGC	2 cut(s)	13, 177
Bsh1236I	CGCG	1 cut(s)	336
BshFI	GGCC	2 cut(s)	54, 173
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	264
BslI	CCNNNNNNNGG	2 cut(s)	61, 263
BsnI	GGCC	2 cut(s)	54, 173
Bsp1286I	GDGCHC	3 cut(s)	39, 90, 111
Bsp13I	TCCGGA	1 cut(s)	263
BspACI	CCGC	4 cut(s)	55, 231, 334, 339
BspANI	GGCC	2 cut(s)	54, 173
BspCNI	CTCAG	1 cut(s)	330
BspEI	TCCGGA	1 cut(s)	263
BspFNI	CGCG	1 cut(s)	336
BspQI	GCTCTTC	2 cut(s)	95, 245
BsrBI	CCGCTC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	46
BssNI	GRCGYC	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	47
Bst6I	CTCTTC	2 cut(s)	95, 245
BstACI	GRCGYC	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	317
BstFNI	CGCG	1 cut(s)	336
BstHHI	GCGC	3 cut(s)	26, 253, 338
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	2 cut(s)	13, 177
BsuRI	GGCC	2 cut(s)	54, 173
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	19, 93
CfoI	GCGC	3 cut(s)	26, 253, 338
Cfr13I	GGNCC	1 cut(s)	172
CviAII	CATG	2 cut(s)	152, 160
DdeI	CTNAG	1 cut(s)	317
Eam1104I	CTCTTC	2 cut(s)	95, 245
EarI	CTCTTC	2 cut(s)	95, 245
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	3 cut(s)	39, 90, 111
Eco53kI	GAGCTC	1 cut(s)	88
EcoICRI	GAGCTC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	45
EcoT38I	GRGCYC	3 cut(s)	39, 90, 111
FaeI	CATG	2 cut(s)	155, 163
FaiI	YATR	6 cut(s)	153, 161, 225, 305, 313, 329
FatI	CATG	2 cut(s)	151, 159
Fnu4HI	GCNGC	5 cut(s)	27, 55, 166, 231, 339
FriOI	GRGCYC	3 cut(s)	39, 90, 111
Fsp4HI	GCNGC	5 cut(s)	27, 55, 166, 231, 339
GlaI	GCGC	3 cut(s)	25, 252, 337
GluI	GCNGC	5 cut(s)	27, 55, 166, 231, 339
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	54, 173
HapII	CCGG	1 cut(s)	264
HhaI	GCGC	3 cut(s)	26, 253, 338
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	2 cut(s)	155, 163
Hin6I	GCGC	3 cut(s)	24, 251, 336
HinP1I	GCGC	3 cut(s)	24, 251, 336
HinfI	GANTC	2 cut(s)	119, 280
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	2 cut(s)	64, 106
Hpy188I	TCNGA	2 cut(s)	247, 320
Hpy188III	TCNNGA	1 cut(s)	264
Hpy99I	CGWCG	3 cut(s)	104, 107, 280
HpyAV	CCTTC	3 cut(s)	121, 139, 303
HpyCH4IV	ACGT	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	155, 163
HspAI	GCGC	3 cut(s)	24, 251, 336
Kpn2I	TCCGGA	1 cut(s)	263
LguI	GCTCTTC	2 cut(s)	95, 245
LmnI	GCTCC	2 cut(s)	48, 192
LpnPI	CCDG	4 cut(s)	32, 59, 216, 277
Lsp1109I	GCAGC	2 cut(s)	13, 177
LweI	GCATC	3 cut(s)	67, 78, 238
MaeII	ACGT	1 cut(s)	99
MbiI	CCGCTC	1 cut(s)	233
MboII	GAAGA	2 cut(s)	82, 232
MhlI	GDGCHC	3 cut(s)	39, 90, 111
MluCI	AATT	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	128
MroI	TCCGGA	1 cut(s)	263
MseI	TTAA	2 cut(s)	300, 345
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	336
NlaIII	CATG	2 cut(s)	155, 163
NmeAIII	GCCGAG	1 cut(s)	214
PciSI	GCTCTTC	2 cut(s)	95, 245
PfeI	GAWTC	1 cut(s)	280
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	5 cut(s)	28, 56, 167, 232, 340
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PshBI	ATTAAT	1 cut(s)	300
Psp124BI	GAGCTC	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	172
PsyI	GACNNNGTC	1 cut(s)	101
SacI	GAGCTC	1 cut(s)	90
SapI	GCTCTTC	2 cut(s)	95, 245
SaqAI	TTAA	2 cut(s)	300, 345
SatI	GCNGC	5 cut(s)	27, 55, 166, 231, 339
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	3 cut(s)	39, 90, 111
SetI	ASST	7 cut(s)	12, 18, 45, 90, 102, 201, 208
SfaNI	GCATC	3 cut(s)	67, 78, 238
Sse9I	AATT	1 cut(s)	297
SsiI	CCGC	4 cut(s)	55, 231, 334, 339
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	45
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	7 cut(s)	33, 60, 84, 105, 132, 208, 278
TasI	AATT	1 cut(s)	297
TauI	GCSGC	3 cut(s)	57, 233, 341
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	2 cut(s)	300, 345
Tru9I	TTAA	2 cut(s)	300, 345
TscAI	CASTG	2 cut(s)	26, 100
TseI	GCWGC	2 cut(s)	26, 165
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	2 cut(s)	26, 100
Tth111I	GACNNNGTC	1 cut(s)	101
VspI	ATTAAT	1 cut(s)	300
ZraI	GACGTC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.