Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Forward (+)

19568117 .. 19568654

Gene Structure 538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG092000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCCTAAGCTTGACCTCCACTGCGCTGCCACCGAGCCCAAGGAGGCTAAGCTCCAGGGAGGCCGCTTCGAGGAGGGCATCACCGACGCCATCGAGCGCTTCACCGGCGCCATTGAGCCCTTCACCGAGTCAATCTCCTTCGACAAAGCCCTCTGCAAGCATGACATCATGGGCAGCAAGGCCCACGCCTCAATGCTCCCTAAACAGTGGACTGCAGAGGTTATCAGTATCTTTTTGTTTATTATATGTGTTATCTTTGGGAGCAAAGTTTCAAACACTTGCTGGTTGGTAATATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004056 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016842 GO:0019752 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 map00220 map00250 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

ASL_C2 Lyase_1

Protein Analysis

99

Amino Acids

10.97

Weight (kDa)

5.86

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AciI	CCGC	1 cut(s)	64
AcyI	GRCGYC	2 cut(s)	87, 108
AfeI	AGCGCT	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	273
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	2 cut(s)	10, 52
AluI	AGCT	2 cut(s)	10, 52
Aor51HI	AGCGCT	1 cut(s)	98
AoxI	GGCC	2 cut(s)	61, 180
ApeKI	GCWGC	2 cut(s)	26, 174
AspLEI	GCGC	3 cut(s)	26, 99, 110
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	3 cut(s)	73, 94, 115
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	2 cut(s)	39, 120
BbvI	GCAGC	2 cut(s)	13, 186
BccI	CCATC	1 cut(s)	98
BciT130I	CCWGG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	213
BfoI	RGCGCY	2 cut(s)	100, 111
BisI	GCNGC	3 cut(s)	27, 64, 175
BlpI	GCTNAGC	1 cut(s)	48
BlsI	GCNGC	3 cut(s)	28, 65, 176
Bme1390I	CCNGG	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	87
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	6
Bpu1102I	GCTNAGC	1 cut(s)	48
BsaHI	GRCGYC	2 cut(s)	87, 108
BsaJI	CCNNGG	2 cut(s)	39, 55
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse118I	RCCGGY	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	39, 55
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	13, 186
BshFI	GGCC	2 cut(s)	63, 182
BshNI	GGYRCC	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	70
BsnI	GGCC	2 cut(s)	63, 182
Bsp1286I	GDGCHC	2 cut(s)	39, 120
Bsp1720I	GCTNAGC	1 cut(s)	48
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	2 cut(s)	63, 182
BspLI	GGNNCC	1 cut(s)	109
BspMAI	CTGCAG	1 cut(s)	217
BspT107I	GGYRCC	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	2 cut(s)	39, 55
BssNI	GRCGYC	2 cut(s)	87, 108
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	207
BstACI	GRCGYC	2 cut(s)	87, 108
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	2 cut(s)	6, 48
BstH2I	RGCGCY	2 cut(s)	100, 111
BstHHI	GCGC	3 cut(s)	26, 99, 110
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	213
BstV1I	GCAGC	2 cut(s)	13, 186
BsuRI	GGCC	2 cut(s)	63, 182
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	19, 212
Cac8I	GCNNGC	1 cut(s)	158
CfoI	GCGC	3 cut(s)	26, 99, 110
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	181
CseI	GACGC	1 cut(s)	95
CviAII	CATG	2 cut(s)	161, 169
CviJI	RGCY	8 cut(s)	10, 37, 47, 52, 63, 118, 149, 182
CviKI_1	RGCY	8 cut(s)	10, 37, 47, 52, 63, 118, 149, 182
DdeI	CTNAG	2 cut(s)	6, 48
DinI	GGCGCC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	2 cut(s)	39, 120
Eco47III	AGCGCT	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	2 cut(s)	39, 120
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	2 cut(s)	164, 172
FaiI	YATR	5 cut(s)	162, 170, 245, 247, 298
FatI	CATG	2 cut(s)	160, 168
Fnu4HI	GCNGC	3 cut(s)	27, 64, 175
FriOI	GRGCYC	2 cut(s)	39, 120
Fsp4HI	GCNGC	3 cut(s)	27, 64, 175
GlaI	GCGC	3 cut(s)	25, 98, 109
GluI	GCNGC	3 cut(s)	27, 64, 175
GsuI	CTGGAG	1 cut(s)	38
HaeII	RGCGCY	2 cut(s)	100, 111
HaeIII	GGCC	2 cut(s)	63, 182
HapII	CCGG	1 cut(s)	105
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	3 cut(s)	26, 99, 110
Hin1I	GRCGYC	2 cut(s)	87, 108
Hin1II	CATG	2 cut(s)	164, 172
Hin6I	GCGC	3 cut(s)	24, 97, 108
HinP1I	GCGC	3 cut(s)	24, 97, 108
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	3 cut(s)	73, 94, 115
Hpy166II	GTNNAC	1 cut(s)	210
Hpy8I	GTNNAC	1 cut(s)	210
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	130, 148
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4V	TGCA	2 cut(s)	156, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	2 cut(s)	6, 48
Hsp92I	GRCGYC	2 cut(s)	87, 108
Hsp92II	CATG	2 cut(s)	164, 172
HspAI	GCGC	3 cut(s)	24, 97, 108
KasI	GGCGCC	1 cut(s)	107
LmnI	GCTCC	3 cut(s)	57, 201, 261
LpnPI	CCDG	4 cut(s)	41, 68, 118, 268
Lsp1109I	GCAGC	2 cut(s)	13, 186
LweI	GCATC	1 cut(s)	87
MhlI	GDGCHC	2 cut(s)	39, 120
Mly113I	GGCGCC	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	8 cut(s)	26, 37, 53, 64, 67, 161, 199, 211
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	105
NarI	GGCGCC	1 cut(s)	108
NlaIII	CATG	2 cut(s)	164, 172
NlaIV	GGNNCC	1 cut(s)	109
PkrI	GCNGC	3 cut(s)	28, 65, 176
PleI	GAGTC	1 cut(s)	136
PluTI	GGCGCC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	217
SatI	GCNGC	3 cut(s)	27, 64, 175
Sau96I	GGNCC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	2 cut(s)	39, 120
SetI	ASST	4 cut(s)	12, 18, 54, 222
SfaNI	GCATC	1 cut(s)	87
SfcI	CTRYAG	1 cut(s)	213
SfoI	GGCGCC	1 cut(s)	109
SgrAI	CRCCGGYG	1 cut(s)	104
SsiI	CCGC	1 cut(s)	64
SspDI	GGCGCC	1 cut(s)	107
SspI	AATATT	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	207
TaqI	TCGA	3 cut(s)	69, 93, 141
TauI	GCSGC	1 cut(s)	66
TscAI	CASTG	2 cut(s)	26, 212
TseI	GCWGC	2 cut(s)	26, 174
TspRI	CASTG	2 cut(s)	26, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.