Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Reverse (-)

4550633 .. 4557015

Gene Structure 6383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG032900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAGATTGAACGAGAAGTATGATATAGGTTTGAATCCTGACTGCACCTTGTACATTGCTTTGATTGATGGATTCTTGAAAGAAAATAACGTGGATAAGGCCCTCAGGATCAAAGAAGAGATGGTCGCTCGAGGAGTTAAGTTGTGTGGTGTCACATATAATGTGATTTTTGCAGGGATCTGTAAAATAGGTAAGATGGAGAAGGCAGAATCTCTTTTGAATGAGATGAATGCTATGGGAATTGAACCTAATACCCAGACATATAACTATTTAATTGATGGGTATTGTCGGGAGCAAAATGTAAACAAGGCTTATGCATTACTTAATGAGATGAAGCAAAGGTTCCATGTTATTCAAAGTTCTCAAGCTTCTTTAAGTAAAGCATGTCATCCTCCAGAAGTGTCCAACATACTTCCAATTTTCCAAAGAATCGGCTTCTTTCTTTCTGAGGGAAACATTCTGTACCAGTTTCCATCTCTACGGCGCATAGCTTCTAGGAAGATAAGAATATGTACAGAGTTTGTGGAAGAGCTGATAATTTTTTTAAGGAGAAATGGCAATTCAGGTCCTTATTCTATTTGCCTTTTCCAATTGTTCCGTGAGTTCCATCTGCAATTAAATTTAGCAATTAAGTTTTCTCTTTGCAGAAACACTAGTATTGCTAAGAGAGCAATGGTTGTTGGACTTGGTGAACTGCCAGTATTTGGGGTTCTCATTCTGAGAGGCCTATTAAAATATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

28.19

Weight (kDa)

9.17

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	27 - 112	4e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	36 - 95	3.7e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	51 - 97	1.8e-17	PPR repeat family
PPR	PF01535	51 - 81	2.3e-06	PPR repeat
PPR_3	PF13812	71 - 113	5.4e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	79 - 112	5.8e-13	PPR repeat
PPR_2	PF13041	87 - 114	2.6e-08	PPR repeat family
PPR	PF01535	87 - 114	6.2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	704
AclWI	GGATC	2 cut(s)	116, 185
AcsI	RAATTY	1 cut(s)	619
AfaI	GTAC	3 cut(s)	53, 464, 514
AfiI	CCNNNNNNNGG	1 cut(s)	704
AgsI	TTSAA	6 cut(s)	10, 34, 79, 220, 245, 356
AhlI	ACTAGT	1 cut(s)	653
AluBI	AGCT	3 cut(s)	368, 491, 532
AluI	AGCT	3 cut(s)	368, 491, 532
AlwI	GGATC	2 cut(s)	116, 185
Ama87I	CYCGRG	1 cut(s)	129
AoxI	GGCC	2 cut(s)	99, 724
ApoI	RAATTY	1 cut(s)	619
AspLEI	GCGC	1 cut(s)	486
AspS9I	GGNCC	2 cut(s)	100, 566
AsuHPI	GGTGA	1 cut(s)	701
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	566
AxyI	CCTNAGG	1 cut(s)	104
BccI	CCATC	6 cut(s)	62, 115, 190, 272, 481, 615
BceAI	ACGGC	1 cut(s)	497
BcuI	ACTAGT	1 cut(s)	653
BfaI	CTAG	2 cut(s)	495, 654
Bme18I	GGWCC	1 cut(s)	566
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	100, 566
BmiI	GGNNCC	1 cut(s)	344
BpmI	CTGGAG	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	1 cut(s)	704
Bse1I	ACTGG	2 cut(s)	466, 698
Bse21I	CCTNAGG	1 cut(s)	104
Bse3DI	GCAATG	2 cut(s)	54, 678
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	704
BseMI	GCAATG	2 cut(s)	54, 678
BseMII	CTCAG	3 cut(s)	118, 438, 710
BseNI	ACTGG	2 cut(s)	466, 698
BseRI	GAGGAG	1 cut(s)	147
BsgI	GTGCAG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	101, 726
BsiHKCI	CYCGRG	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	704
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	2 cut(s)	101, 726
BsoBI	CYCGRG	1 cut(s)	129
Bsp1407I	TGTACA	2 cut(s)	51, 512
Bsp143I	GATC	2 cut(s)	108, 177
BspANI	GGCC	2 cut(s)	101, 726
BspCNI	CTCAG	3 cut(s)	117, 439, 711
BspLI	GGNNCC	1 cut(s)	344
BspPI	GGATC	2 cut(s)	116, 185
BspQI	GCTCTTC	1 cut(s)	522
BsrDI	GCAATG	2 cut(s)	54, 678
BsrGI	TGTACA	2 cut(s)	51, 512
BsrI	ACTGG	2 cut(s)	466, 698
BssMI	GATC	2 cut(s)	108, 177
Bst6I	CTCTTC	2 cut(s)	111, 522
BstAUI	TGTACA	2 cut(s)	51, 512
BstDEI	CTNAG	4 cut(s)	104, 447, 663, 719
BstF5I	GGATG	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	486
BstKTI	GATC	2 cut(s)	111, 180
BstMBI	GATC	2 cut(s)	108, 177
BstMWI	GCNNNNNNNGC	1 cut(s)	668
BstNSI	RCATGY	1 cut(s)	387
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
Bsu36I	CCTNAGG	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	101, 726
BtsCI	GGATG	1 cut(s)	388
CfoI	GCGC	1 cut(s)	486
Cfr13I	GGNCC	2 cut(s)	100, 566
Csp6I	GTAC	3 cut(s)	52, 463, 513
CviAII	CATG	2 cut(s)	347, 384
CviJI	RGCY	7 cut(s)	101, 311, 368, 435, 491, 532, 726
CviKI_1	RGCY	7 cut(s)	101, 311, 368, 435, 491, 532, 726
CviQI	GTAC	3 cut(s)	52, 463, 513
DdeI	CTNAG	4 cut(s)	104, 447, 663, 719
DpnI	GATC	2 cut(s)	110, 179
DpnII	GATC	2 cut(s)	108, 177
Eam1104I	CTCTTC	2 cut(s)	111, 522
EarI	CTCTTC	2 cut(s)	111, 522
Eco147I	AGGCCT	1 cut(s)	726
Eco47I	GGWCC	1 cut(s)	566
Eco81I	CCTNAGG	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	129
EcoO109I	RGGNCCY	2 cut(s)	100, 566
EcoT22I	ATGCAT	1 cut(s)	319
FaeI	CATG	2 cut(s)	350, 387
FatI	CATG	2 cut(s)	346, 383
FokI	GGATG	1 cut(s)	375
FspBI	CTAG	2 cut(s)	495, 654
GlaI	GCGC	1 cut(s)	485
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	2 cut(s)	101, 726
HhaI	GCGC	1 cut(s)	486
Hin1II	CATG	2 cut(s)	350, 387
Hin6I	GCGC	1 cut(s)	484
HinP1I	GCGC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	366
HinfI	GANTC	4 cut(s)	34, 72, 209, 429
HphI	GGTGA	1 cut(s)	701
Hpy166II	GTNNAC	2 cut(s)	304, 692
Hpy188I	TCNGA	2 cut(s)	448, 720
Hpy188III	TCNNGA	5 cut(s)	38, 76, 106, 290, 395
Hpy8I	GTNNAC	2 cut(s)	304, 692
HpyAV	CCTTC	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	5 cut(s)	45, 173, 317, 613, 645
HpyF10VI	GCNNNNNNNGC	1 cut(s)	668
HpyF3I	CTNAG	4 cut(s)	104, 447, 663, 719
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	350, 387
HspAI	GCGC	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	108, 177
LguI	GCTCTTC	1 cut(s)	522
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	8 cut(s)	51, 91, 159, 269, 408, 479, 549, 711
MaeI	CTAG	2 cut(s)	495, 654
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	2 cut(s)	110, 179
MboI	GATC	2 cut(s)	108, 177
MboII	GAAGA	3 cut(s)	128, 511, 539
MfeI	CAATTG	1 cut(s)	590
MflI	RGATCY	1 cut(s)	177
MluCI	AATT	9 cut(s)	240, 273, 417, 537, 559, 590, 614, 619, 627
MmeI	TCCRAC	2 cut(s)	429, 661
MnlI	CCTC	5 cut(s)	113, 125, 402, 442, 716
Mph1103I	ATGCAT	1 cut(s)	319
MseI	TTAA	8 cut(s)	138, 272, 324, 374, 545, 617, 630, 731
MunI	CAATTG	1 cut(s)	590
Mva1269I	GAATGC	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	668
NdeII	GATC	2 cut(s)	108, 177
NlaIII	CATG	2 cut(s)	350, 387
NlaIV	GGNNCC	1 cut(s)	344
NmuCI	GTSAC	1 cut(s)	151
NsiI	ATGCAT	1 cut(s)	319
NspI	RCATGY	1 cut(s)	387
PaeR7I	CTCGAG	1 cut(s)	129
PceI	AGGCCT	1 cut(s)	726
PciSI	GCTCTTC	1 cut(s)	522
PctI	GAATGC	1 cut(s)	235
PfeI	GAWTC	4 cut(s)	34, 72, 209, 429
PflMI	CCANNNNNTGG	1 cut(s)	704
PpuMI	RGGWCCY	1 cut(s)	566
Psp5II	RGGWCCY	1 cut(s)	566
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	2 cut(s)	100, 566
PspPPI	RGGWCCY	1 cut(s)	566
PspXI	VCTCGAGB	1 cut(s)	129
PsrI	GAACNNNNNNTAC	2 cut(s)	693, 725
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	3 cut(s)	53, 464, 514
RsaNI	GTAC	3 cut(s)	52, 463, 513
SapI	GCTCTTC	1 cut(s)	522
SaqAI	TTAA	8 cut(s)	138, 272, 324, 374, 545, 617, 630, 731
Sau3AI	GATC	2 cut(s)	108, 177
Sau96I	GGNCC	2 cut(s)	100, 566
Sfr274I	CTCGAG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	566
SlaI	CTCGAG	1 cut(s)	129
SmlI	CTYRAG	2 cut(s)	129, 363
SmoI	CTYRAG	2 cut(s)	129, 363
SpeI	ACTAGT	1 cut(s)	653
Sse9I	AATT	9 cut(s)	240, 273, 417, 537, 559, 590, 614, 619, 627
SseBI	AGGCCT	1 cut(s)	726
SspMI	CTAG	2 cut(s)	495, 654
StuI	AGGCCT	1 cut(s)	726
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	130
TasI	AATT	9 cut(s)	240, 273, 417, 537, 559, 590, 614, 619, 627
TatI	WGTACW	2 cut(s)	51, 512
TfiI	GAWTC	4 cut(s)	34, 72, 209, 429
Tru1I	TTAA	8 cut(s)	138, 272, 324, 374, 545, 617, 630, 731
Tru9I	TTAA	8 cut(s)	138, 272, 324, 374, 545, 617, 630, 731
TseFI	GTSAC	1 cut(s)	151
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	2 cut(s)	242, 347
TspGWI	ACGGA	1 cut(s)	587
Van91I	CCANNNNNTGG	1 cut(s)	704
VpaK11BI	GGWCC	1 cut(s)	566
XapI	RAATTY	1 cut(s)	619
XceI	RCATGY	1 cut(s)	387
XhoI	CTCGAG	1 cut(s)	129
XspI	CTAG	2 cut(s)	495, 654
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.