Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Reverse (-)

1903987 .. 1906282

Gene Structure 2296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG011500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCCCAAGCTTGACCTCCACTGCGTTGCCACCGAGCCCAAGGAGGCCAAGCTCCAGGGAGGTCACTTCGAGGAGGGCATCACCGACGCCATCGAGCGCTTCACTGACGCCGTCGAGCCCTTCACCGAGTCCATCTCCTTCAACAAAGCCCTCTACAAGCATGACATCATGGGCAGCAAGGCCCATGCCTCAATGCTTCCCAAACAGCTTCCAGCTCGATTTCTCAACTTCCATAATGCCGCTCGACTCTTCTCCGATGCGCCTCCTCCCTCCGGAGAGCCTCCATCGATTCCACCGCCTCAAAACCCTCTGTCTCCCTCGTCATCGAGGGATCCATTATCTGCTAGGCCATTTGAAGGGCTCAAGTTTATTGATGTTGGCTGTGGTGGTGGAATTCTGTCTGAGAATTGTATCGATGCAATTCTGATGCAGATTAAGCAGCAGCAGGTTTTTGATGGTCTGTTTGGTGACAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004056 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016842 GO:0019752 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 map00220 map00250 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

ASL_C2 Lyase_1

Protein Analysis

159

Amino Acids

17.33

Weight (kDa)

5.34

Isoelectric Point (pI)

58.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	436
AccBSI	CCGCTC	1 cut(s)	242
AccIII	TCCGGA	1 cut(s)	272
AciI	CCGC	2 cut(s)	240, 296
AclWI	GGATC	2 cut(s)	326, 339
AcsI	RAATTY	1 cut(s)	393
AcyI	GRCGYC	2 cut(s)	87, 108
AfeI	AGCGCT	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	272, 356
AgsI	TTSAA	2 cut(s)	142, 356
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	4 cut(s)	10, 52, 208, 215
AluI	AGCT	4 cut(s)	10, 52, 208, 215
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	2 cut(s)	326, 339
Aor13HI	TCCGGA	1 cut(s)	272
Aor51HI	AGCGCT	1 cut(s)	98
AoxI	GGCC	3 cut(s)	45, 180, 347
ApeKI	GCWGC	3 cut(s)	174, 439, 442
ApoI	RAATTY	1 cut(s)	393
AspLEI	GCGC	2 cut(s)	99, 262
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	3 cut(s)	73, 115, 479
BamHI	GGATCC	1 cut(s)	331
BanII	GRGCYC	3 cut(s)	39, 120, 363
BbvI	GCAGC	3 cut(s)	186, 451, 454
BccI	CCATC	4 cut(s)	98, 140, 292, 449
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	318
BfaI	CTAG	1 cut(s)	345
BfoI	RGCGCY	1 cut(s)	100
BfuAI	ACCTGC	1 cut(s)	436
BisI	GCNGC	4 cut(s)	175, 240, 440, 443
BlsI	GCNGC	4 cut(s)	176, 241, 441, 444
Bme1390I	CCNGG	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	4 cut(s)	87, 247, 406, 417
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	347
Bsa29I	ATCGAT	2 cut(s)	287, 414
BsaHI	GRCGYC	2 cut(s)	87, 108
BsaJI	CCNNGG	2 cut(s)	39, 55
BsaWI	WCCGGW	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 356
BseAI	TCCGGA	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	56
BseCI	ATCGAT	2 cut(s)	287, 414
BseDI	CCNNGG	2 cut(s)	39, 55
BseLI	CCNNNNNNNGG	2 cut(s)	272, 356
BseMII	CTCAG	1 cut(s)	393
BseRI	GAGGAG	2 cut(s)	86, 255
BseXI	GCAGC	3 cut(s)	186, 451, 454
BshFI	GGCC	3 cut(s)	47, 182, 349
BshVI	ATCGAT	2 cut(s)	287, 414
BsiSI	CCGG	1 cut(s)	273
BslI	CCNNNNNNNGG	2 cut(s)	272, 356
BsmAI	GTCTC	1 cut(s)	318
BsnI	GGCC	3 cut(s)	47, 182, 349
Bsp1286I	GDGCHC	3 cut(s)	39, 120, 363
Bsp13I	TCCGGA	1 cut(s)	272
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	2 cut(s)	240, 296
BspANI	GGCC	3 cut(s)	47, 182, 349
BspCNI	CTCAG	1 cut(s)	394
BspDI	ATCGAT	2 cut(s)	287, 414
BspEI	TCCGGA	1 cut(s)	272
BspLI	GGNNCC	1 cut(s)	333
BspMI	ACCTGC	1 cut(s)	436
BspPI	GGATC	2 cut(s)	326, 339
BsrBI	CCGCTC	1 cut(s)	242
BssECI	CCNNGG	2 cut(s)	39, 55
BssMI	GATC	1 cut(s)	331
BssNI	GRCGYC	2 cut(s)	87, 108
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	254
BstACI	GRCGYC	2 cut(s)	87, 108
BstDEI	CTNAG	1 cut(s)	402
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	2 cut(s)	99, 262
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	1 cut(s)	436
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	54
BstV1I	GCAGC	3 cut(s)	186, 451, 454
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
Bsu15I	ATCGAT	2 cut(s)	287, 414
BsuRI	GGCC	3 cut(s)	47, 182, 349
BsuTUI	ATCGAT	2 cut(s)	287, 414
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	19, 102
BveI	ACCTGC	1 cut(s)	436
CfoI	GCGC	2 cut(s)	99, 262
Cfr13I	GGNCC	1 cut(s)	181
ClaI	ATCGAT	2 cut(s)	287, 414
CseI	GACGC	2 cut(s)	95, 116
CviAII	CATG	3 cut(s)	161, 169, 185
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	3 cut(s)	39, 120, 363
Eco47III	AGCGCT	1 cut(s)	98
EcoRI	GAATTC	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	3 cut(s)	39, 120, 363
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	3 cut(s)	164, 172, 188
FaiI	YATR	4 cut(s)	162, 170, 186, 234
FatI	CATG	3 cut(s)	160, 168, 184
Fnu4HI	GCNGC	4 cut(s)	175, 240, 440, 443
FriOI	GRGCYC	3 cut(s)	39, 120, 363
Fsp4HI	GCNGC	4 cut(s)	175, 240, 440, 443
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	2 cut(s)	98, 261
GluI	GCNGC	4 cut(s)	175, 240, 440, 443
GsuI	CTGGAG	1 cut(s)	38
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	3 cut(s)	47, 182, 349
HapII	CCGG	1 cut(s)	273
HgaI	GACGC	2 cut(s)	95, 116
HhaI	GCGC	2 cut(s)	99, 262
Hin1I	GRCGYC	2 cut(s)	87, 108
Hin1II	CATG	3 cut(s)	164, 172, 188
Hin6I	GCGC	2 cut(s)	97, 260
HinP1I	GCGC	2 cut(s)	97, 260
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	3 cut(s)	128, 246, 289
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	3 cut(s)	73, 115, 479
Hpy188I	TCNGA	3 cut(s)	256, 403, 426
Hpy188III	TCNNGA	1 cut(s)	273
Hpy99I	CGWCG	2 cut(s)	89, 116
HpyAV	CCTTC	3 cut(s)	130, 148, 350
HpyCH4V	TGCA	2 cut(s)	419, 430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	436
HpyF3I	CTNAG	1 cut(s)	402
Hsp92I	GRCGYC	2 cut(s)	87, 108
Hsp92II	CATG	3 cut(s)	164, 172, 188
HspAI	GCGC	2 cut(s)	97, 260
Kpn2I	TCCGGA	1 cut(s)	272
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	1 cut(s)	57
LpnPI	CCDG	5 cut(s)	41, 68, 225, 286, 431
Lsp1109I	GCAGC	3 cut(s)	186, 451, 454
LweI	GCATC	4 cut(s)	87, 247, 406, 417
MaeI	CTAG	1 cut(s)	345
MaeIII	GTNAC	2 cut(s)	62, 467
MalI	GATC	1 cut(s)	333
MbiI	CCGCTC	1 cut(s)	242
MboI	GATC	1 cut(s)	331
MboII	GAAGA	1 cut(s)	241
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	3 cut(s)	39, 120, 363
MluCI	AATT	3 cut(s)	393, 406, 420
MlyI	GAGTC	2 cut(s)	137, 240
MroI	TCCGGA	1 cut(s)	272
MseI	TTAA	1 cut(s)	435
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	436
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	3 cut(s)	164, 172, 188
NlaIV	GGNNCC	1 cut(s)	333
NmuCI	GTSAC	2 cut(s)	62, 467
PfeI	GAWTC	1 cut(s)	289
PflFI	GACNNNGTC	1 cut(s)	110
PkrI	GCNGC	4 cut(s)	176, 241, 441, 444
PleI	GAGTC	2 cut(s)	136, 240
PpsI	GAGTC	2 cut(s)	136, 240
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	331
PsyI	GACNNNGTC	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	4 cut(s)	175, 240, 440, 443
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	1 cut(s)	181
SchI	GAGTC	2 cut(s)	137, 240
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	3 cut(s)	39, 120, 363
SetI	ASST	7 cut(s)	12, 18, 54, 64, 210, 217, 450
SfaNI	GCATC	4 cut(s)	87, 247, 406, 417
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	3 cut(s)	393, 406, 420
SsiI	CCGC	2 cut(s)	240, 296
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	39
TaqI	TCGA	8 cut(s)	69, 93, 114, 217, 244, 287, 326, 414
TasI	AATT	3 cut(s)	393, 406, 420
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	2 cut(s)	26, 109
TseFI	GTSAC	2 cut(s)	62, 467
TseI	GCWGC	3 cut(s)	174, 439, 442
Tsp45I	GTSAC	2 cut(s)	62, 467
TspRI	CASTG	2 cut(s)	26, 109
Tth111I	GACNNNGTC	1 cut(s)	110
XapI	RAATTY	1 cut(s)	393
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.