Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004354.1

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Forward (+)

81387 .. 83513

Gene Structure 2127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004354.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atgtcgatcacaccctcctcttacaaatccatgcccaagctcgacctccactgcgctgccactgagcccaaggaggccaagctccagggaggccgcttcgaggagggcatcaccgacaccatcgagcgcttcatcgacgccgtcgagcccttcaccgagtccatctccttcgacaaagccctctacaagcatgacatcatgggcagcaaggcccacgcctcaatgctccccaaacagtctttagcttccagctcaatttctcaactttcaaaatgccgctcggctcttctccgatgcgccttcgacctccggagagcctccgtcgattccaccgcctcaaaactagggctggcaaattctcccgaaccaaaccgtaccaaccgcatccgagccgaaccaagtgaattggtagccgaaaactcggtaaccgaagtcttggtacgccctactcaaaaccctttgtctccctcgtcgtcgtctttgaaccaggcagagctcgctaagttcgccgccattgccagaacctggagggatccattatctgctagaccatttgcagggctcaagtttattgatgttggctgtggtggtggaattctgtctgaggtatattatgcatcatctttattttccgctttaacgcacaaccatagtttcaaattagtcatttacgcattttggcaatggggatcaaatggtgttgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004056 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016842 GO:0019752 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 map00220 map00250 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

ASL_C2 Lyase_1

Protein Analysis

235

Amino Acids

25.62

Weight (kDa)

8.66

Isoelectric Point (pI)

51.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	525
AccBSI	CCGCTC	1 cut(s)	279
AccIII	TCCGGA	1 cut(s)	309
AciI	CCGC	6 cut(s)	94, 277, 333, 382, 510, 633
AclWI	GGATC	3 cut(s)	527, 540, 697
AcsI	RAATTY	2 cut(s)	355, 594
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	2 cut(s)	376, 441
AfeI	AGCGCT	1 cut(s)	128
AfiI	CCNNNNNNNGG	3 cut(s)	100, 525, 557
AgsI	TTSAA	3 cut(s)	270, 484, 658
AjnI	CCWGG	3 cut(s)	84, 486, 524
AluBI	AGCT	5 cut(s)	40, 82, 245, 252, 496
AluI	AGCT	5 cut(s)	40, 82, 245, 252, 496
Alw21I	GWGCWC	1 cut(s)	498
Alw26I	GTCTC	1 cut(s)	468
AlwI	GGATC	3 cut(s)	527, 540, 697
AlwNI	CAGNNNCTG	1 cut(s)	525
Aor13HI	TCCGGA	1 cut(s)	309
Aor51HI	AGCGCT	1 cut(s)	128
AoxI	GGCC	3 cut(s)	75, 91, 210
ApeKI	GCWGC	2 cut(s)	56, 204
ApoI	RAATTY	2 cut(s)	355, 594
AspLEI	GCGC	3 cut(s)	56, 129, 299
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	2 cut(s)	103, 145
BamHI	GGATCC	1 cut(s)	532
BanII	GRGCYC	4 cut(s)	69, 150, 498, 564
BarI	GAAGNNNNNNTAC	2 cut(s)	423, 455
Bbv12I	GWGCWC	1 cut(s)	498
BbvI	GCAGC	2 cut(s)	43, 216
BccI	CCATC	2 cut(s)	128, 170
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	3 cut(s)	86, 488, 526
BcoDI	GTCTC	1 cut(s)	468
BfaI	CTAG	3 cut(s)	344, 546, 706
BfoI	RGCGCY	1 cut(s)	130
BisI	GCNGC	5 cut(s)	57, 94, 205, 277, 510
BlsI	GCNGC	5 cut(s)	58, 95, 206, 278, 511
Bme1390I	CCNGG	3 cut(s)	86, 488, 526
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	534
BmrFI	CCNGG	3 cut(s)	86, 488, 526
BmsI	GCATC	4 cut(s)	117, 284, 393, 626
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
BpmI	CTGGAG	2 cut(s)	68, 547
BpuEI	CTTGAG	1 cut(s)	548
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	69, 85
BsaWI	WCCGGW	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 525, 557
Bse3DI	GCAATG	2 cut(s)	513, 689
BseAI	TCCGGA	1 cut(s)	309
BseBI	CCWGG	3 cut(s)	86, 488, 526
BseDI	CCNNGG	2 cut(s)	69, 85
BseGI	GGATG	1 cut(s)	384
BseLI	CCNNNNNNNGG	3 cut(s)	100, 525, 557
BseMI	GCAATG	2 cut(s)	513, 689
BseMII	CTCAG	2 cut(s)	54, 594
BseRI	GAGGAG	2 cut(s)	7, 116
BseXI	GCAGC	2 cut(s)	43, 216
BshFI	GGCC	3 cut(s)	77, 93, 212
BsiHKAI	GWGCWC	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	310
BslI	CCNNNNNNNGG	3 cut(s)	100, 525, 557
BsmAI	GTCTC	1 cut(s)	468
BsnI	GGCC	3 cut(s)	77, 93, 212
Bsp1286I	GDGCHC	4 cut(s)	69, 150, 498, 564
Bsp13I	TCCGGA	1 cut(s)	309
Bsp143I	GATC	3 cut(s)	6, 532, 689
BspACI	CCGC	6 cut(s)	94, 277, 333, 382, 510, 633
BspANI	GGCC	3 cut(s)	77, 93, 212
BspCNI	CTCAG	2 cut(s)	55, 595
BspEI	TCCGGA	1 cut(s)	309
BspLI	GGNNCC	1 cut(s)	534
BspPI	GGATC	3 cut(s)	527, 540, 697
BspQI	GCTCTTC	1 cut(s)	291
BsrBI	CCGCTC	1 cut(s)	279
BsrDI	GCAATG	2 cut(s)	513, 689
BssECI	CCNNGG	2 cut(s)	69, 85
BssMI	GATC	3 cut(s)	6, 532, 689
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	3 cut(s)	86, 488, 526
Bst4CI	ACNGT	2 cut(s)	237, 374
Bst6I	CTCTTC	1 cut(s)	291
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	2 cut(s)	351, 498
BstDEI	CTNAG	3 cut(s)	63, 501, 603
BstEII	GGTNACC	1 cut(s)	424
BstF5I	GGATG	1 cut(s)	384
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	3 cut(s)	56, 129, 299
BstKTI	GATC	3 cut(s)	9, 535, 692
BstMAI	GTCTC	1 cut(s)	468
BstMBI	GATC	3 cut(s)	6, 532, 689
BstMWI	GCNNNNNNNGC	3 cut(s)	497, 506, 515
BstNI	CCWGG	3 cut(s)	86, 488, 526
BstPI	GGTNACC	1 cut(s)	424
BstSCI	CCNGG	3 cut(s)	84, 486, 524
BstV1I	GCAGC	2 cut(s)	43, 216
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BsuRI	GGCC	3 cut(s)	77, 93, 212
BtsCI	GGATG	1 cut(s)	384
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	2 cut(s)	49, 60
Cac8I	GCNNGC	2 cut(s)	351, 498
CaiI	CAGNNNCTG	1 cut(s)	525
CfoI	GCGC	3 cut(s)	56, 129, 299
Cfr13I	GGNCC	1 cut(s)	211
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	375, 440
CviAII	CATG	3 cut(s)	31, 191, 199
CviQI	GTAC	2 cut(s)	375, 440
DdeI	CTNAG	3 cut(s)	63, 501, 603
DpnI	GATC	3 cut(s)	8, 534, 691
DpnII	GATC	3 cut(s)	6, 532, 689
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	4 cut(s)	69, 150, 498, 564
Eco47III	AGCGCT	1 cut(s)	128
Eco53kI	GAGCTC	1 cut(s)	496
Eco91I	GGTNACC	1 cut(s)	424
EcoICRI	GAGCTC	1 cut(s)	496
EcoO65I	GGTNACC	1 cut(s)	424
EcoRI	GAATTC	1 cut(s)	594
EcoRII	CCWGG	3 cut(s)	84, 486, 524
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	619
EcoT38I	GRGCYC	4 cut(s)	69, 150, 498, 564
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	3 cut(s)	34, 194, 202
FaiI	YATR	6 cut(s)	32, 192, 200, 610, 615, 651
FatI	CATG	3 cut(s)	30, 190, 198
Fnu4HI	GCNGC	5 cut(s)	57, 94, 205, 277, 510
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	4 cut(s)	69, 150, 498, 564
Fsp4HI	GCNGC	5 cut(s)	57, 94, 205, 277, 510
FspBI	CTAG	3 cut(s)	344, 546, 706
GlaI	GCGC	3 cut(s)	55, 128, 298
GluI	GCNGC	5 cut(s)	57, 94, 205, 277, 510
GsuI	CTGGAG	2 cut(s)	68, 547
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	3 cut(s)	77, 93, 212
HapII	CCGG	1 cut(s)	310
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	3 cut(s)	56, 129, 299
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	3 cut(s)	34, 194, 202
Hin6I	GCGC	3 cut(s)	54, 127, 297
HinP1I	GCGC	3 cut(s)	54, 127, 297
HinfI	GANTC	2 cut(s)	158, 326
HpaII	CCGG	1 cut(s)	310
HphI	GGTGA	2 cut(s)	103, 145
Hpy188I	TCNGA	3 cut(s)	293, 389, 604
Hpy188III	TCNNGA	2 cut(s)	310, 362
Hpy99I	CGWCG	5 cut(s)	140, 146, 326, 475, 478
HpyAV	CCTTC	3 cut(s)	160, 178, 310
HpyCH4III	ACNGT	2 cut(s)	237, 374
HpyCH4V	TGCA	2 cut(s)	557, 617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	497, 506, 515
HpyF3I	CTNAG	3 cut(s)	63, 501, 603
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	34, 194, 202
HspAI	GCGC	3 cut(s)	54, 127, 297
Kpn2I	TCCGGA	1 cut(s)	309
Kzo9I	GATC	3 cut(s)	6, 532, 689
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	2 cut(s)	87, 231
Lsp1109I	GCAGC	2 cut(s)	43, 216
LweI	GCATC	4 cut(s)	117, 284, 393, 626
MaeI	CTAG	3 cut(s)	344, 546, 706
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	3 cut(s)	8, 534, 691
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	3 cut(s)	6, 532, 689
MboII	GAAGA	1 cut(s)	278
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	4 cut(s)	69, 150, 498, 564
MluCI	AATT	5 cut(s)	255, 355, 404, 594, 659
MlyI	GAGTC	1 cut(s)	167
Mph1103I	ATGCAT	1 cut(s)	619
MroI	TCCGGA	1 cut(s)	309
MseI	TTAA	1 cut(s)	638
MspI	CCGG	1 cut(s)	310
MspR9I	CCNGG	3 cut(s)	86, 488, 526
MvaI	CCWGG	3 cut(s)	86, 488, 526
MwoI	GCNNNNNNNGC	3 cut(s)	497, 506, 515
NdeII	GATC	3 cut(s)	6, 532, 689
NlaIII	CATG	3 cut(s)	34, 194, 202
NlaIV	GGNNCC	1 cut(s)	534
NmeAIII	GCCGAG	1 cut(s)	260
NsiI	ATGCAT	1 cut(s)	619
PciSI	GCTCTTC	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	326
PflFI	GACNNNGTC	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	525
PkrI	GCNGC	5 cut(s)	58, 95, 206, 278, 511
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp124BI	GAGCTC	1 cut(s)	498
Psp6I	CCWGG	3 cut(s)	84, 486, 524
PspEI	GGTNACC	1 cut(s)	424
PspGI	CCWGG	3 cut(s)	84, 486, 524
PspN4I	GGNNCC	1 cut(s)	534
PspPI	GGNCC	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	525
PsuI	RGATCY	1 cut(s)	532
PsyI	GACNNNGTC	1 cut(s)	140
RsaI	GTAC	2 cut(s)	376, 441
RsaNI	GTAC	2 cut(s)	375, 440
SacI	GAGCTC	1 cut(s)	498
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	638
SatI	GCNGC	5 cut(s)	57, 94, 205, 277, 510
Sau3AI	GATC	3 cut(s)	6, 532, 689
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	3 cut(s)	86, 488, 526
SduI	GDGCHC	4 cut(s)	69, 150, 498, 564
SetI	ASST	9 cut(s)	42, 48, 84, 247, 254, 309, 498, 527, 609
SfaNI	GCATC	4 cut(s)	117, 284, 393, 626
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	5 cut(s)	255, 355, 404, 594, 659
SsiI	CCGC	6 cut(s)	94, 277, 333, 382, 510, 633
SspMI	CTAG	3 cut(s)	344, 546, 706
SstI	GAGCTC	1 cut(s)	498
StyD4I	CCNGG	3 cut(s)	84, 486, 524
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	237, 374
TaqI	TCGA	9 cut(s)	5, 42, 99, 123, 135, 144, 171, 303, 324
TasI	AATT	5 cut(s)	255, 355, 404, 594, 659
TauI	GCSGC	3 cut(s)	96, 279, 512
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	1 cut(s)	638
Tru9I	TTAA	1 cut(s)	638
TscAI	CASTG	2 cut(s)	56, 67
TseI	GCWGC	2 cut(s)	56, 204
TspDTI	ATGAA	1 cut(s)	121
TspGWI	ACGGA	1 cut(s)	310
TspRI	CASTG	2 cut(s)	56, 67
Tth111I	GACNNNGTC	1 cut(s)	140
Van91I	CCANNNNNTGG	1 cut(s)	525
XapI	RAATTY	2 cut(s)	355, 594
XspI	CTAG	3 cut(s)	344, 546, 706
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.