Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Reverse (-)

60169037 .. 60172350

Gene Structure 3314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG426200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCCCAAGCTCGACCTCCACTGCGCTACCACCGAGCCCAAGCTCCAGGGAGGCCGCTTCGAGGAGGGCATCACCGATGCCATCGAGCTCTTCACTGACGCCGTCGAGCCCTTCACCGAGTCCATCTCCTTCGACAAATCCCTCTACAAGCATGACATCATGGGCAGCAAGGCCCACGCCTCAATGCTCCCCAAACAGGAGAAATGGCAATTCAGAAAAACTAGTATTGCTAAGAGAGCAATGGTCGTTGGACTTGGTGGACTCAAAGTATTTGGGGTTCTCATTCTGAGAGGCCTATTAAAGGATCCTATAGTTGCACAAGTTGGCTTTATCAAGTTTATTACAAGCATAAATCCTCTACTTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004056 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016842 GO:0019752 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 map00220 map00250 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

ASL_C2 Lyase_1

Protein Analysis

122

Amino Acids

13.54

Weight (kDa)

9.1

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	55
AclWI	GGATC	2 cut(s)	299, 312
AcuI	CTGAAG	1 cut(s)	347
AcyI	GRCGYC	1 cut(s)	99
AfiI	CCNNNNNNNGG	3 cut(s)	61, 196, 301
AhlI	ACTAGT	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	3 cut(s)	10, 43, 88
AluI	AGCT	3 cut(s)	10, 43, 88
Alw21I	GWGCWC	1 cut(s)	90
AlwI	GGATC	2 cut(s)	299, 312
AoxI	GGCC	3 cut(s)	52, 171, 292
ApeKI	GCWGC	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	2 cut(s)	64, 106
BamHI	GGATCC	1 cut(s)	304
BanII	GRGCYC	3 cut(s)	39, 90, 111
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	177
BccI	CCATC	2 cut(s)	89, 131
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	47
BcuI	ACTAGT	1 cut(s)	221
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	2 cut(s)	55, 166
BlsI	GCNGC	2 cut(s)	56, 167
Bme1390I	CCNGG	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	2 cut(s)	67, 78
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
BpmI	CTGGAG	1 cut(s)	29
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 196, 301
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	46
BseLI	CCNNNNNNNGG	3 cut(s)	61, 196, 301
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	278
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	177
BshFI	GGCC	3 cut(s)	54, 173, 294
BsiHKAI	GWGCWC	1 cut(s)	90
BslI	CCNNNNNNNGG	3 cut(s)	61, 196, 301
BsnI	GGCC	3 cut(s)	54, 173, 294
Bsp1286I	GDGCHC	3 cut(s)	39, 90, 111
Bsp143I	GATC	1 cut(s)	304
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	3 cut(s)	54, 173, 294
BspCNI	CTCAG	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	2 cut(s)	299, 312
BspQI	GCTCTTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	1 cut(s)	304
BssNI	GRCGYC	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	47
Bst6I	CTCTTC	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	99
BstDEI	CTNAG	2 cut(s)	231, 287
BstENI	CCTNNNNNAGG	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	3 cut(s)	54, 173, 294
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	19, 93
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	172
CseI	GACGC	1 cut(s)	107
CviAII	CATG	2 cut(s)	152, 160
CviJI	RGCY	9 cut(s)	10, 37, 43, 54, 88, 109, 173, 294, 327
CviKI_1	RGCY	9 cut(s)	10, 37, 43, 54, 88, 109, 173, 294, 327
DdeI	CTNAG	2 cut(s)	231, 287
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Ecl136II	GAGCTC	1 cut(s)	88
Eco147I	AGGCCT	1 cut(s)	294
Eco24I	GRGCYC	3 cut(s)	39, 90, 111
Eco53kI	GAGCTC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	347
EcoICRI	GAGCTC	1 cut(s)	88
EcoNI	CCTNNNNNAGG	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	45
EcoT38I	GRGCYC	3 cut(s)	39, 90, 111
FaeI	CATG	2 cut(s)	155, 163
FaiI	YATR	4 cut(s)	153, 161, 311, 350
FatI	CATG	2 cut(s)	151, 159
Fnu4HI	GCNGC	2 cut(s)	55, 166
FriOI	GRGCYC	3 cut(s)	39, 90, 111
Fsp4HI	GCNGC	2 cut(s)	55, 166
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	2 cut(s)	55, 166
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	3 cut(s)	54, 173, 294
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	2 cut(s)	155, 163
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	2 cut(s)	119, 261
HphI	GGTGA	2 cut(s)	64, 106
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	2 cut(s)	215, 288
Hpy8I	GTNNAC	1 cut(s)	260
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	2 cut(s)	121, 139
HpyCH4V	TGCA	1 cut(s)	317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	2 cut(s)	231, 287
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	155, 163
HspAI	GCGC	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	304
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	2 cut(s)	48, 192
LpnPI	CCDG	3 cut(s)	32, 59, 182
Lsp1109I	GCAGC	1 cut(s)	177
LweI	GCATC	2 cut(s)	67, 78
MaeI	CTAG	1 cut(s)	222
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	1 cut(s)	82
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	3 cut(s)	39, 90, 111
MluCI	AATT	1 cut(s)	209
MlyI	GAGTC	2 cut(s)	128, 255
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	8 cut(s)	26, 44, 55, 58, 152, 190, 284, 366
MseI	TTAA	1 cut(s)	299
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	2 cut(s)	155, 163
NlaIV	GGNNCC	1 cut(s)	306
PceI	AGGCCT	1 cut(s)	294
PciSI	GCTCTTC	1 cut(s)	95
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	56, 167
PleI	GAGTC	2 cut(s)	127, 255
PpsI	GAGTC	2 cut(s)	127, 255
Psp124BI	GAGCTC	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	172
PsrI	GAACNNNNNNTAC	2 cut(s)	261, 293
PsuI	RGATCY	1 cut(s)	304
PsyI	GACNNNGTC	1 cut(s)	101
SacI	GAGCTC	1 cut(s)	90
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	2 cut(s)	55, 166
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	2 cut(s)	128, 255
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	3 cut(s)	39, 90, 111
SetI	ASST	4 cut(s)	12, 18, 45, 90
SfaNI	GCATC	2 cut(s)	67, 78
SfcI	CTRYAG	1 cut(s)	309
SpeI	ACTAGT	1 cut(s)	221
Sse9I	AATT	1 cut(s)	209
SseBI	AGGCCT	1 cut(s)	294
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	1 cut(s)	222
SstI	GAGCTC	1 cut(s)	90
StuI	AGGCCT	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	45
TaqI	TCGA	5 cut(s)	12, 60, 84, 105, 132
TasI	AATT	1 cut(s)	209
TauI	GCSGC	1 cut(s)	57
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TscAI	CASTG	2 cut(s)	26, 100
TseI	GCWGC	1 cut(s)	165
TspRI	CASTG	2 cut(s)	26, 100
Tth111I	GACNNNGTC	1 cut(s)	101
XagI	CCTNNNNNAGG	1 cut(s)	299
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.