Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001293.1

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Reverse (-)

127517 .. 137278

Gene Structure 9762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001293.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggaagagccagacttgtggcatagagtgaaactgaggagtaaggggcagcgtggaggttgggtcaagtcgtcatcgctatggagcaataccttgtcaaagtcctcgatctttatcagatcagatatctattataccttgactcttttttctatttggctttgtatccatgcccttgacctccactgcgctaccaccgagcccaaggaggccaagctccagggaggccgcttcgaggagggcatcaccgacgccatcaagcgcttcactgacgccgttgagcccttcaccgagtccatctcctttgacaaagccctctacaagcatgacatcataggcagcaaggcccacgcctcaatgctccctaaacagttcctaacagccaccaccaagacagtagcagggcgctccaacgacaaccttctctctctgcccgttctagctgttaggatcccaaacgttcatcttcctcttcgactcagagactccgatcctacagatcgacgtgaacagagatcgctactcgtctctaagaagctgggaaccaatggtgttgatgagtcggcggcagtgacgtcatctctatctcttcgaaaaatgctatgtcttagtaggggtaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004056 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016842 GO:0019752 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 map00220 map00250 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

ASL_C2 Lyase_1

Protein Analysis

207

Amino Acids

23.21

Weight (kDa)

9.64

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	578
AciI	CCGC	2 cut(s)	229, 566
AclI	AACGTT	1 cut(s)	459
AclWI	GGATC	3 cut(s)	445, 458, 485
AcyI	GRCGYC	3 cut(s)	252, 273, 575
AfeI	AGCGCT	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	235
AjiI	CACGTC	1 cut(s)	506
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	3 cut(s)	217, 443, 538
AluI	AGCT	3 cut(s)	217, 443, 538
Alw26I	GTCTC	2 cut(s)	477, 532
AlwI	GGATC	3 cut(s)	445, 458, 485
Aor51HI	AGCGCT	1 cut(s)	263
AoxI	GGCC	3 cut(s)	210, 226, 345
ApeKI	GCWGC	2 cut(s)	49, 339
AspLEI	GCGC	3 cut(s)	191, 264, 408
AspS9I	GGNCC	1 cut(s)	346
AsuHPI	GGTGA	2 cut(s)	238, 280
AsuII	TTCGAA	1 cut(s)	592
BamHI	GGATCC	1 cut(s)	450
BanII	GRGCYC	2 cut(s)	204, 285
BbvI	GCAGC	2 cut(s)	61, 351
BccI	CCATC	2 cut(s)	263, 305
BceAI	ACGGC	1 cut(s)	260
BciT130I	CCWGG	1 cut(s)	221
BciVI	GTATCC	1 cut(s)	176
BcoDI	GTCTC	2 cut(s)	477, 532
BfaI	CTAG	1 cut(s)	440
BfmI	CTRYAG	1 cut(s)	495
BfoI	RGCGCY	2 cut(s)	265, 409
BfuI	GTATCC	1 cut(s)	176
BisI	GCNGC	4 cut(s)	50, 229, 340, 567
BlsI	GCNGC	4 cut(s)	51, 230, 341, 568
Bme1390I	CCNGG	1 cut(s)	221
BmgBI	CACGTC	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	2 cut(s)	452, 544
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	252
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
BpmI	CTGGAG	1 cut(s)	203
Bpu14I	TTCGAA	1 cut(s)	592
BsaBI	GATNNNNATC	1 cut(s)	113
BsaHI	GRCGYC	3 cut(s)	252, 273, 575
BsaJI	CCNNGG	2 cut(s)	204, 220
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse8I	GATNNNNATC	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	204, 220
BseJI	GATNNNNATC	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMII	CTCAG	2 cut(s)	26, 493
BseRI	GAGGAG	2 cut(s)	52, 251
BseXI	GCAGC	2 cut(s)	61, 351
BseYI	CCCAGC	1 cut(s)	538
BshFI	GGCC	3 cut(s)	212, 228, 347
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	2 cut(s)	477, 532
BsmBI	CGTCTC	1 cut(s)	532
BsnI	GGCC	3 cut(s)	212, 228, 347
Bsp119I	TTCGAA	1 cut(s)	592
Bsp1286I	GDGCHC	2 cut(s)	204, 285
Bsp143I	GATC	6 cut(s)	108, 119, 450, 490, 499, 515
BspACI	CCGC	2 cut(s)	229, 566
BspANI	GGCC	3 cut(s)	212, 228, 347
BspCNI	CTCAG	2 cut(s)	27, 492
BspLI	GGNNCC	2 cut(s)	452, 544
BspPI	GGATC	3 cut(s)	445, 458, 485
BspT104I	TTCGAA	1 cut(s)	592
BssECI	CCNNGG	2 cut(s)	204, 220
BssMI	GATC	6 cut(s)	108, 119, 450, 490, 499, 515
BssNI	GRCGYC	3 cut(s)	252, 273, 575
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	2 cut(s)	372, 397
Bst6I	CTCTTC	2 cut(s)	477, 594
BstACI	GRCGYC	3 cut(s)	252, 273, 575
BstBI	TTCGAA	1 cut(s)	592
BstDEI	CTNAG	4 cut(s)	35, 479, 531, 608
BstH2I	RGCGCY	2 cut(s)	265, 409
BstHHI	GCGC	3 cut(s)	191, 264, 408
BstKTI	GATC	6 cut(s)	111, 122, 453, 493, 502, 518
BstMAI	GTCTC	2 cut(s)	477, 532
BstMBI	GATC	6 cut(s)	108, 119, 450, 490, 499, 515
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	495
BstV1I	GCAGC	2 cut(s)	61, 351
BstX2I	RGATCY	1 cut(s)	450
BstXI	CCANNNNNNTGG	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	450
BsuI	GTATCC	1 cut(s)	176
BsuRI	GGCC	3 cut(s)	212, 228, 347
BtgZI	GCGATG	1 cut(s)	60
BtrI	CACGTC	1 cut(s)	506
BtsI	GCAGTG	2 cut(s)	184, 576
BtsIMutI	CAGTG	3 cut(s)	184, 267, 576
CfoI	GCGC	3 cut(s)	191, 264, 408
Cfr13I	GGNCC	1 cut(s)	346
CseI	GACGC	2 cut(s)	260, 281
CviAII	CATG	2 cut(s)	170, 326
DdeI	CTNAG	4 cut(s)	35, 479, 531, 608
DpnI	GATC	6 cut(s)	110, 121, 452, 492, 501, 517
DpnII	GATC	6 cut(s)	108, 119, 450, 490, 499, 515
Eam1104I	CTCTTC	2 cut(s)	477, 594
EarI	CTCTTC	2 cut(s)	477, 594
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	2 cut(s)	204, 285
Eco32I	GATATC	1 cut(s)	127
Eco47III	AGCGCT	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	219
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	2 cut(s)	204, 285
ErhI	CCWWGG	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	532
FaeI	CATG	2 cut(s)	173, 329
FaiI	YATR	7 cut(s)	24, 82, 135, 171, 327, 335, 604
FatI	CATG	2 cut(s)	169, 325
Fnu4HI	GCNGC	4 cut(s)	50, 229, 340, 567
FriOI	GRGCYC	2 cut(s)	204, 285
Fsp4HI	GCNGC	4 cut(s)	50, 229, 340, 567
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	3 cut(s)	190, 263, 407
GluI	GCNGC	4 cut(s)	50, 229, 340, 567
GsaI	CCCAGC	1 cut(s)	542
GsuI	CTGGAG	1 cut(s)	203
HaeII	RGCGCY	2 cut(s)	265, 409
HaeIII	GGCC	3 cut(s)	212, 228, 347
HgaI	GACGC	2 cut(s)	260, 281
HhaI	GCGC	3 cut(s)	191, 264, 408
Hin1I	GRCGYC	3 cut(s)	252, 273, 575
Hin1II	CATG	2 cut(s)	173, 329
Hin6I	GCGC	3 cut(s)	189, 262, 406
HinP1I	GCGC	3 cut(s)	189, 262, 406
HinfI	GANTC	5 cut(s)	142, 293, 477, 485, 560
HphI	GGTGA	2 cut(s)	238, 280
Hpy166II	GTNNAC	1 cut(s)	509
Hpy188I	TCNGA	4 cut(s)	119, 124, 482, 490
Hpy8I	GTNNAC	1 cut(s)	509
Hpy99I	CGWCG	2 cut(s)	254, 507
HpyAV	CCTTC	2 cut(s)	295, 431
HpyCH4III	ACNGT	2 cut(s)	372, 397
HpyCH4IV	ACGT	3 cut(s)	459, 505, 575
HpyF3I	CTNAG	4 cut(s)	35, 479, 531, 608
HpySE526I	ACGT	3 cut(s)	459, 505, 575
Hsp92I	GRCGYC	3 cut(s)	252, 273, 575
Hsp92II	CATG	2 cut(s)	173, 329
HspAI	GCGC	3 cut(s)	189, 262, 406
Kzo9I	GATC	6 cut(s)	108, 119, 450, 490, 499, 515
LmnI	GCTCC	4 cut(s)	84, 222, 366, 413
LpnPI	CCDG	5 cut(s)	24, 206, 233, 387, 524
Lsp1109I	GCAGC	2 cut(s)	61, 351
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	3 cut(s)	459, 505, 575
MaeIII	GTNAC	1 cut(s)	571
MalI	GATC	6 cut(s)	110, 121, 452, 492, 501, 517
MboI	GATC	6 cut(s)	108, 119, 450, 490, 499, 515
MboII	GAAGA	4 cut(s)	17, 458, 464, 581
MflI	RGATCY	1 cut(s)	450
MhlI	GDGCHC	2 cut(s)	204, 285
MlyI	GAGTC	5 cut(s)	136, 302, 471, 479, 569
MmeI	TCCRAC	1 cut(s)	435
MslI	CAYNNNNRTG	1 cut(s)	79
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
NdeII	GATC	6 cut(s)	108, 119, 450, 490, 499, 515
NlaIII	CATG	2 cut(s)	173, 329
NlaIV	GGNNCC	2 cut(s)	452, 544
NmuCI	GTSAC	1 cut(s)	571
NspV	TTCGAA	1 cut(s)	592
PkrI	GCNGC	4 cut(s)	51, 230, 341, 568
PleI	GAGTC	5 cut(s)	136, 301, 471, 479, 568
PpsI	GAGTC	5 cut(s)	136, 301, 471, 479, 568
Psp1406I	AACGTT	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	219
PspFI	CCCAGC	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	2 cut(s)	452, 544
PspPI	GGNCC	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	450
RseI	CAYNNNNRTG	1 cut(s)	79
SatI	GCNGC	4 cut(s)	50, 229, 340, 567
Sau3AI	GATC	6 cut(s)	108, 119, 450, 490, 499, 515
Sau96I	GGNCC	1 cut(s)	346
SchI	GAGTC	5 cut(s)	136, 302, 471, 479, 569
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	2 cut(s)	204, 285
SfaNI	GCATC	1 cut(s)	252
SfcI	CTRYAG	1 cut(s)	495
SfuI	TTCGAA	1 cut(s)	592
SmiMI	CAYNNNNRTG	1 cut(s)	79
SsiI	CCGC	2 cut(s)	229, 566
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	372, 397
TaiI	ACGT	3 cut(s)	462, 508, 578
TaqI	TCGA	5 cut(s)	107, 234, 475, 502, 592
TauI	GCSGC	2 cut(s)	231, 569
TscAI	CASTG	3 cut(s)	191, 274, 576
TseFI	GTSAC	1 cut(s)	571
TseI	GCWGC	2 cut(s)	49, 339
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	1 cut(s)	452
TspRI	CASTG	3 cut(s)	191, 274, 576
XspI	CTAG	1 cut(s)	440
ZraI	GACGTC	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.