Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Reverse (-)

34199448 .. 34200697

Gene Structure 1250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG281800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCCCAAGCTCGACCTCCACTGCGCTGCCACCGAGCCCAAGGAGGCCAAGCTCCAGGGAGGCCGCTTTGAGGAGGGCATCACCGACGCCATCGAGCGCTTCATAGACGCCGTCGAGCCCTTCACCGAGTCCATCTCCTTCGACAAAGCCTTCTACAAGCATGACATCATGGGCAGCAAGGCCCAAGCCTCATGGTCCCCAAACAGGTCCTTCACTTTAGTTTCTCCATTTTCACTTCCAGCTCTATTTCTCAACTTCCATAATGCCGCTCGGCTCTTCTCCGATGCGCCTCCTCCCTCCGGAGAGCCTCCGTCGATTCCACCGCCTCAAAACCCTTTGTCTCCCTCGCCGTCGTCTTTGAACCAGGCAGAGCTCGCTAAGTTCGCTGCCATTGCCGGAACCCGGTGGGATTCTGAAGGACCGTTCAAACCTTTGCATGCGATGAATCCTACAAAGCTCGCCTTCATTCGCTCAACGCTGTGTCGTTATTTCAGGAGGGATCCATTATCTGCTAGGCCATTTGAAGGGCCCAAGTTTATTGATGTTGGTTGTGGTGGTGGAATTCTGTCTGAGAATTGTATCGATGCAATTCTGATGCTGATTAAGCAGCTGCAGGTTTTTGATGGTCTGTTTGGTGACAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

215

Amino Acids

23.6

Weight (kDa)

5.85

Isoelectric Point (pI)

62.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	604
AccBSI	CCGCTC	1 cut(s)	269
AccIII	TCCGGA	1 cut(s)	299
AciI	CCGC	3 cut(s)	64, 267, 323
AclWI	GGATC	2 cut(s)	494, 507
AcsI	RAATTY	1 cut(s)	561
AcuI	CTGAAG	1 cut(s)	435
AcyI	GRCGYC	2 cut(s)	87, 108
AfeI	AGCGCT	1 cut(s)	98
AfiI	CCNNNNNNNGG	5 cut(s)	70, 204, 299, 402, 524
AgsI	TTSAA	3 cut(s)	361, 427, 524
AjnI	CCWGG	2 cut(s)	54, 363
AluBI	AGCT	6 cut(s)	10, 52, 242, 373, 457, 610
AluI	AGCT	6 cut(s)	10, 52, 242, 373, 457, 610
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	345
AlwI	GGATC	2 cut(s)	494, 507
Aor13HI	TCCGGA	1 cut(s)	299
Aor51HI	AGCGCT	1 cut(s)	98
AoxI	GGCC	5 cut(s)	45, 61, 180, 515, 527
ApaI	GGGCCC	1 cut(s)	531
ApeKI	GCWGC	5 cut(s)	26, 174, 386, 607, 610
ApoI	RAATTY	1 cut(s)	561
AspLEI	GCGC	3 cut(s)	26, 99, 289
AspS9I	GGNCC	6 cut(s)	181, 195, 207, 419, 527, 528
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	3 cut(s)	73, 115, 647
AvaII	GGWCC	3 cut(s)	195, 207, 419
BaeGI	GKGCMC	1 cut(s)	531
BamHI	GGATCC	1 cut(s)	499
BanII	GRGCYC	4 cut(s)	39, 120, 375, 531
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	5 cut(s)	13, 186, 373, 597, 619
BccI	CCATC	3 cut(s)	98, 140, 617
BceAI	ACGGC	2 cut(s)	95, 334
BciT130I	CCWGG	2 cut(s)	56, 365
BcnI	CCSGG	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	1 cut(s)	611
BfoI	RGCGCY	1 cut(s)	100
BfuAI	ACCTGC	1 cut(s)	604
BisI	GCNGC	7 cut(s)	27, 64, 175, 267, 387, 608, 611
BlsI	GCNGC	7 cut(s)	28, 65, 176, 268, 388, 609, 612
Bme1390I	CCNGG	3 cut(s)	56, 365, 403
Bme18I	GGWCC	3 cut(s)	195, 207, 419
BmgT120I	GGNCC	6 cut(s)	181, 195, 207, 419, 527, 528
BmiI	GGNNCC	4 cut(s)	197, 400, 501, 529
BmrFI	CCNGG	3 cut(s)	56, 365, 403
BmsI	GCATC	4 cut(s)	87, 274, 574, 585
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	403
Bsa29I	ATCGAT	1 cut(s)	582
BsaHI	GRCGYC	2 cut(s)	87, 108
BsaJI	CCNNGG	2 cut(s)	39, 55
BsaWI	WCCGGW	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	5 cut(s)	70, 204, 299, 402, 524
Bse3DI	GCAATG	1 cut(s)	390
BseAI	TCCGGA	1 cut(s)	299
BseBI	CCWGG	2 cut(s)	56, 365
BseCI	ATCGAT	1 cut(s)	582
BseDI	CCNNGG	2 cut(s)	39, 55
BseLI	CCNNNNNNNGG	5 cut(s)	70, 204, 299, 402, 524
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	561
BseRI	GAGGAG	2 cut(s)	86, 282
BseSI	GKGCMC	1 cut(s)	531
BseXI	GCAGC	5 cut(s)	13, 186, 373, 597, 619
BshFI	GGCC	5 cut(s)	47, 63, 182, 517, 529
BshVI	ATCGAT	1 cut(s)	582
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	3 cut(s)	300, 396, 403
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	5 cut(s)	70, 204, 299, 402, 524
BsmAI	GTCTC	1 cut(s)	345
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	5 cut(s)	47, 63, 182, 517, 529
Bsp120I	GGGCCC	1 cut(s)	527
Bsp1286I	GDGCHC	4 cut(s)	39, 120, 375, 531
Bsp13I	TCCGGA	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	499
BspACI	CCGC	3 cut(s)	64, 267, 323
BspANI	GGCC	5 cut(s)	47, 63, 182, 517, 529
BspCNI	CTCAG	1 cut(s)	562
BspDI	ATCGAT	1 cut(s)	582
BspEI	TCCGGA	1 cut(s)	299
BspLI	GGNNCC	4 cut(s)	197, 400, 501, 529
BspMAI	CTGCAG	1 cut(s)	615
BspMI	ACCTGC	1 cut(s)	604
BspPI	GGATC	2 cut(s)	494, 507
BspQI	GCTCTTC	1 cut(s)	281
BsrBI	CCGCTC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	390
BssECI	CCNNGG	2 cut(s)	39, 55
BssMI	GATC	1 cut(s)	499
BssNI	GRCGYC	2 cut(s)	87, 108
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	56, 365
Bst4CI	ACNGT	1 cut(s)	423
Bst6I	CTCTTC	1 cut(s)	281
BstACI	GRCGYC	2 cut(s)	87, 108
BstC8I	GCNNGC	3 cut(s)	375, 438, 459
BstDEI	CTNAG	2 cut(s)	378, 570
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	3 cut(s)	26, 99, 289
BstKTI	GATC	1 cut(s)	502
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	1 cut(s)	499
BstMWI	GCNNNNNNNGC	4 cut(s)	374, 383, 392, 604
BstNI	CCWGG	2 cut(s)	56, 365
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	3 cut(s)	54, 363, 401
BstSFI	CTRYAG	1 cut(s)	611
BstSLI	GKGCMC	1 cut(s)	531
BstV1I	GCAGC	5 cut(s)	13, 186, 373, 597, 619
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
Bsu15I	ATCGAT	1 cut(s)	582
BsuRI	GGCC	5 cut(s)	47, 63, 182, 517, 529
BsuTUI	ATCGAT	1 cut(s)	582
BtgZI	GCGATG	1 cut(s)	455
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
BveI	ACCTGC	1 cut(s)	604
Cac8I	GCNNGC	3 cut(s)	375, 438, 459
CfoI	GCGC	3 cut(s)	26, 99, 289
Cfr13I	GGNCC	6 cut(s)	181, 195, 207, 419, 527, 528
ClaI	ATCGAT	1 cut(s)	582
CseI	GACGC	2 cut(s)	95, 116
CviAII	CATG	4 cut(s)	161, 169, 192, 437
DdeI	CTNAG	2 cut(s)	378, 570
DpnI	GATC	1 cut(s)	501
DpnII	GATC	1 cut(s)	499
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Ecl136II	GAGCTC	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	4 cut(s)	39, 120, 375, 531
Eco47I	GGWCC	3 cut(s)	195, 207, 419
Eco47III	AGCGCT	1 cut(s)	98
Eco53kI	GAGCTC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	435
EcoICRI	GAGCTC	1 cut(s)	373
EcoO109I	RGGNCCY	2 cut(s)	207, 527
EcoRI	GAATTC	1 cut(s)	561
EcoRII	CCWGG	2 cut(s)	54, 363
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	4 cut(s)	39, 120, 375, 531
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	4 cut(s)	164, 172, 195, 440
FaiI	YATR	6 cut(s)	104, 162, 170, 193, 261, 438
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	4 cut(s)	160, 168, 191, 436
Fnu4HI	GCNGC	7 cut(s)	27, 64, 175, 267, 387, 608, 611
FriOI	GRGCYC	4 cut(s)	39, 120, 375, 531
Fsp4HI	GCNGC	7 cut(s)	27, 64, 175, 267, 387, 608, 611
FspBI	CTAG	1 cut(s)	513
GlaI	GCGC	3 cut(s)	25, 98, 288
GluI	GCNGC	7 cut(s)	27, 64, 175, 267, 387, 608, 611
GsuI	CTGGAG	1 cut(s)	38
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	5 cut(s)	47, 63, 182, 517, 529
HapII	CCGG	3 cut(s)	300, 396, 403
HgaI	GACGC	2 cut(s)	95, 116
HhaI	GCGC	3 cut(s)	26, 99, 289
Hin1I	GRCGYC	2 cut(s)	87, 108
Hin1II	CATG	4 cut(s)	164, 172, 195, 440
Hin6I	GCGC	3 cut(s)	24, 97, 287
HinP1I	GCGC	3 cut(s)	24, 97, 287
HinfI	GANTC	4 cut(s)	128, 316, 410, 445
HpaII	CCGG	3 cut(s)	300, 396, 403
HphI	GGTGA	3 cut(s)	73, 115, 647
Hpy188I	TCNGA	4 cut(s)	283, 415, 571, 594
Hpy188III	TCNNGA	2 cut(s)	300, 493
Hpy99I	CGWCG	4 cut(s)	89, 116, 316, 355
HpyAV	CCTTC	7 cut(s)	130, 148, 160, 220, 410, 472, 518
HpyCH4III	ACNGT	1 cut(s)	423
HpyCH4V	TGCA	3 cut(s)	436, 587, 613
HpyF10VI	GCNNNNNNNGC	4 cut(s)	374, 383, 392, 604
HpyF3I	CTNAG	2 cut(s)	378, 570
Hsp92I	GRCGYC	2 cut(s)	87, 108
Hsp92II	CATG	4 cut(s)	164, 172, 195, 440
HspAI	GCGC	3 cut(s)	24, 97, 287
Kpn2I	TCCGGA	1 cut(s)	299
Kzo9I	GATC	1 cut(s)	499
LguI	GCTCTTC	1 cut(s)	281
LmnI	GCTCC	1 cut(s)	57
Lsp1109I	GCAGC	5 cut(s)	13, 186, 373, 597, 619
LweI	GCATC	4 cut(s)	87, 274, 574, 585
MaeI	CTAG	1 cut(s)	513
MaeIII	GTNAC	1 cut(s)	635
MalI	GATC	1 cut(s)	501
MbiI	CCGCTC	1 cut(s)	269
MboI	GATC	1 cut(s)	499
MboII	GAAGA	1 cut(s)	268
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	4 cut(s)	39, 120, 375, 531
MluCI	AATT	3 cut(s)	561, 574, 588
MlyI	GAGTC	1 cut(s)	137
MroI	TCCGGA	1 cut(s)	299
MseI	TTAA	1 cut(s)	603
MspA1I	CMGCKG	1 cut(s)	610
MspI	CCGG	3 cut(s)	300, 396, 403
MspR9I	CCNGG	3 cut(s)	56, 365, 403
MvaI	CCWGG	2 cut(s)	56, 365
MwoI	GCNNNNNNNGC	4 cut(s)	374, 383, 392, 604
NciI	CCSGG	1 cut(s)	403
NdeII	GATC	1 cut(s)	499
NlaIII	CATG	4 cut(s)	164, 172, 195, 440
NlaIV	GGNNCC	4 cut(s)	197, 400, 501, 529
NmeAIII	GCCGAG	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	635
NspI	RCATGY	1 cut(s)	440
PaeI	GCATGC	1 cut(s)	440
PciSI	GCTCTTC	1 cut(s)	281
PfeI	GAWTC	3 cut(s)	316, 410, 445
PflFI	GACNNNGTC	1 cut(s)	110
PkrI	GCNGC	7 cut(s)	28, 65, 176, 268, 388, 609, 612
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	207
Psp6I	CCWGG	2 cut(s)	54, 363
PspGI	CCWGG	2 cut(s)	54, 363
PspN4I	GGNNCC	4 cut(s)	197, 400, 501, 529
PspOMI	GGGCCC	1 cut(s)	527
PspPI	GGNCC	6 cut(s)	181, 195, 207, 419, 527, 528
PspPPI	RGGWCCY	1 cut(s)	207
PstI	CTGCAG	1 cut(s)	615
PsuI	RGATCY	1 cut(s)	499
PsyI	GACNNNGTC	1 cut(s)	110
PvuII	CAGCTG	1 cut(s)	610
SacI	GAGCTC	1 cut(s)	375
SapI	GCTCTTC	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	7 cut(s)	27, 64, 175, 267, 387, 608, 611
Sau3AI	GATC	1 cut(s)	499
Sau96I	GGNCC	6 cut(s)	181, 195, 207, 419, 527, 528
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	3 cut(s)	56, 365, 403
SduI	GDGCHC	4 cut(s)	39, 120, 375, 531
SfaNI	GCATC	4 cut(s)	87, 274, 574, 585
SfcI	CTRYAG	1 cut(s)	611
SinI	GGWCC	3 cut(s)	195, 207, 419
SphI	GCATGC	1 cut(s)	440
Sse9I	AATT	3 cut(s)	561, 574, 588
SsiI	CCGC	3 cut(s)	64, 267, 323
SspMI	CTAG	1 cut(s)	513
SstI	GAGCTC	1 cut(s)	375
StyD4I	CCNGG	3 cut(s)	54, 363, 401
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	423
TaqI	TCGA	6 cut(s)	12, 93, 114, 141, 314, 582
TasI	AATT	3 cut(s)	561, 574, 588
TauI	GCSGC	2 cut(s)	66, 269
TfiI	GAWTC	3 cut(s)	316, 410, 445
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	1 cut(s)	26
TseFI	GTSAC	1 cut(s)	635
TseI	GCWGC	5 cut(s)	26, 174, 386, 607, 610
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	3 cut(s)	91, 454, 458
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	1 cut(s)	26
Tth111I	GACNNNGTC	1 cut(s)	110
VpaK11BI	GGWCC	3 cut(s)	195, 207, 419
XapI	RAATTY	1 cut(s)	561
XceI	RCATGY	1 cut(s)	440
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.