Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Forward (+)

66195430 .. 66196549

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG464900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTTTGACTGTGGCTACACGTCACAGTATCCGGGAGGGCAGAGAGACAAGTTTGTGAGATTAATATTGGAAGATAAGAATATGTACAGAGTTTGTGGAAGAGCTGGTAATTTTTTTAAGGAGAAATGGCAATTCAGAAACACTAGTATTGCTAAGAGAGCAATGGTTGTTGGACTTGGTGAACTGCCAGTATTTGGGGATCTCATTCTGAGAGTTGTGAACAAGGTCTTCTTCCATGGATACTTAGTTCTCATGATTCTCAACCATGCATTCAGTGGCATTGCTGTGTCTATGGTAATGAAGTATGCTAACAATATTGTGAAGGTAGGGAACCACTATTTTTATTTGAGGTATAATGTGCTGAACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

123

Amino Acids

14.29

Weight (kDa)

9.8

Isoelectric Point (pI)

28.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	194
AclWI	GGATC	1 cut(s)	207
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	18
AhlI	ACTAGT	1 cut(s)	143
AjiI	CACGTC	1 cut(s)	21
AloI	GAACNNNNNNTCC	2 cut(s)	231, 263
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	207
AseI	ATTAAT	1 cut(s)	62
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	220
BciVI	GTATCC	2 cut(s)	39, 233
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	39
BcuI	ACTAGT	1 cut(s)	143
BfaI	CTAG	1 cut(s)	144
BfuI	GTATCC	2 cut(s)	39, 233
Bme1390I	CCNGG	1 cut(s)	33
BmgBI	CACGTC	1 cut(s)	21
BmiI	GGNNCC	1 cut(s)	332
BmrFI	CCNGG	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	220
BpuMI	CCSGG	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	188
Bse3DI	GCAATG	2 cut(s)	168, 279
BseDI	CCNNGG	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	2 cut(s)	168, 279
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	269
Bsp1407I	TGTACA	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	199
Bsp19I	CCATGG	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	332
BspPI	GGATC	1 cut(s)	207
BspQI	GCTCTTC	1 cut(s)	94
BsrDI	GCAATG	2 cut(s)	168, 279
BsrGI	TGTACA	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	1 cut(s)	199
BssT1I	CCWWGG	1 cut(s)	235
Bst4CI	ACNGT	2 cut(s)	11, 27
Bst6I	CTCTTC	1 cut(s)	94
BstAUI	TGTACA	1 cut(s)	84
BstDEI	CTNAG	3 cut(s)	153, 209, 244
BstDSI	CCRYGG	1 cut(s)	235
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuI	GTATCC	2 cut(s)	39, 233
BtgI	CCRYGG	1 cut(s)	235
BtrI	CACGTC	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	280
CciI	TCATGA	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	3 cut(s)	236, 253, 266
CviJI	RGCY	2 cut(s)	15, 104
CviKI_1	RGCY	2 cut(s)	15, 104
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	3 cut(s)	153, 209, 244
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	235
EcoT22I	ATGCAT	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	3 cut(s)	239, 256, 269
FaiI	YATR	7 cut(s)	83, 237, 254, 267, 293, 306, 354
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	3 cut(s)	235, 252, 265
FspBI	CTAG	1 cut(s)	144
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	3 cut(s)	239, 256, 269
HinfI	GANTC	1 cut(s)	256
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	2 cut(s)	182, 220
Hpy188I	TCNGA	2 cut(s)	137, 210
Hpy188III	TCNNGA	1 cut(s)	253
Hpy8I	GTNNAC	2 cut(s)	182, 220
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	2 cut(s)	11, 27
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	3 cut(s)	153, 209, 244
HpySE526I	ACGT	1 cut(s)	20
Hsp92II	CATG	3 cut(s)	239, 256, 269
Kzo9I	GATC	1 cut(s)	199
LguI	GCTCTTC	1 cut(s)	94
LpnPI	CCDG	3 cut(s)	45, 90, 201
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	4 cut(s)	83, 111, 220, 223
MflI	RGATCY	1 cut(s)	199
MluCI	AATT	2 cut(s)	109, 131
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	2 cut(s)	29, 342
Mph1103I	ATGCAT	1 cut(s)	271
MseI	TTAA	3 cut(s)	62, 117, 370
MslI	CAYNNNNRTG	1 cut(s)	284
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	158
NciI	CCSGG	1 cut(s)	33
NcoI	CCATGG	1 cut(s)	235
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	3 cut(s)	239, 256, 269
NlaIV	GGNNCC	1 cut(s)	332
NmuCI	GTSAC	1 cut(s)	21
NsiI	ATGCAT	1 cut(s)	271
PagI	TCATGA	1 cut(s)	252
PciSI	GCTCTTC	1 cut(s)	94
PctI	GAATGC	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	256
PflMI	CCANNNNNTGG	1 cut(s)	194
PfoI	TCCNGGA	1 cut(s)	31
PshBI	ATTAAT	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	284
SapI	GCTCTTC	1 cut(s)	94
SaqAI	TTAA	3 cut(s)	62, 117, 370
Sau3AI	GATC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	33
SetI	ASST	5 cut(s)	23, 106, 228, 327, 353
SmiMI	CAYNNNNRTG	1 cut(s)	284
SpeI	ACTAGT	1 cut(s)	143
Sse9I	AATT	2 cut(s)	109, 131
SspI	AATATT	2 cut(s)	66, 316
SspMI	CTAG	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	11, 27
TaiI	ACGT	1 cut(s)	23
TasI	AATT	2 cut(s)	109, 131
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	3 cut(s)	62, 117, 370
Tru9I	TTAA	3 cut(s)	62, 117, 370
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	1 cut(s)	21
Tsp45I	GTSAC	1 cut(s)	21
TspDTI	ATGAA	1 cut(s)	314
TspRI	CASTG	1 cut(s)	280
Van91I	CCANNNNNTGG	1 cut(s)	194
VspI	ATTAAT	1 cut(s)	62
XcmI	CCANNNNNNNNNTGG	1 cut(s)	272
XspI	CTAG	1 cut(s)	144
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.